Wall clock time and date at job start Tue Mar 31 2020 22:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99484 * 2 1 4 4 C 1.46890 * 111.00196 * 123.95344 * 2 1 3 5 5 H 1.09003 * 109.47601 * 300.00128 * 4 2 1 6 6 C 1.52997 * 109.47247 * 60.00115 * 4 2 1 7 7 C 1.53003 * 109.47205 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.46937 * 299.99910 * 7 6 4 9 9 C 1.53001 * 109.47296 * 60.00516 * 8 7 6 10 10 H 1.08994 * 109.47037 * 59.99168 * 9 8 7 11 11 N 1.46499 * 109.47087 * 179.97438 * 9 8 7 12 12 C 1.34775 * 119.99905 * 274.99636 * 11 9 8 13 13 O 1.21585 * 119.99975 * 359.97438 * 12 11 9 14 14 N 1.34775 * 119.99798 * 180.02562 * 12 11 9 15 15 C 1.46501 * 120.00117 * 180.02562 * 14 12 11 16 16 C 1.53041 * 109.45535 * 275.02390 * 15 14 12 17 17 C 1.53194 * 109.31188 * 178.60015 * 16 15 14 18 18 N 1.46925 * 108.76721 * 54.65286 * 17 16 15 19 19 C 1.36934 * 120.63027 * 126.36461 * 18 17 16 20 20 H 1.08006 * 119.99755 * 207.70531 * 19 18 17 21 21 C 1.38810 * 119.99941 * 27.69808 * 19 18 17 22 22 N 1.31611 * 120.00302 * 17.35298 * 21 19 18 23 23 Si 1.86806 * 119.99757 * 197.35318 * 21 19 18 24 24 H 1.48492 * 109.47309 * 60.00071 * 23 21 19 25 25 H 1.48498 * 109.47015 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47059 * 300.00214 * 23 21 19 27 27 C 1.46929 * 118.73828 * 306.38619 * 18 17 16 28 28 C 1.53035 * 109.46214 * 154.97121 * 15 14 12 29 29 C 1.53003 * 109.46706 * 299.99625 * 9 8 7 30 30 H 1.09001 * 109.47179 * 296.04143 * 1 2 3 31 31 H 1.08997 * 109.47215 * 56.04259 * 1 2 3 32 32 H 1.09002 * 109.46640 * 176.04761 * 1 2 3 33 33 H 1.09004 * 109.47137 * 183.95654 * 3 2 1 34 34 H 1.09002 * 109.47477 * 303.95272 * 3 2 1 35 35 H 1.09000 * 109.47330 * 63.95715 * 3 2 1 36 36 H 1.09003 * 109.47345 * 299.99881 * 6 4 2 37 37 H 1.09003 * 109.47323 * 59.99636 * 6 4 2 38 38 H 1.08994 * 109.47000 * 60.00500 * 7 6 4 39 39 H 1.09004 * 109.46884 * 180.02562 * 7 6 4 40 40 H 1.09008 * 109.46956 * 179.97438 * 8 7 6 41 41 H 1.08994 * 109.47588 * 299.99600 * 8 7 6 42 42 H 0.97002 * 119.99786 * 94.99590 * 11 9 8 43 43 H 0.97002 * 119.99893 * 359.97438 * 14 12 11 44 44 H 1.08998 * 109.46037 * 34.98920 * 15 14 12 45 45 H 1.08998 * 109.50085 * 298.56332 * 16 15 14 46 46 H 1.08998 * 109.49722 * 58.66298 * 16 15 14 47 47 H 1.09006 * 109.59838 * 294.86569 * 17 16 15 48 48 H 1.09002 * 109.58990 * 174.43889 * 17 16 15 49 49 H 0.96997 * 120.00379 * 179.97438 * 22 21 19 50 50 H 1.08993 * 109.58356 * 293.81858 * 27 18 17 51 51 H 1.08994 * 109.58579 * 173.39150 * 27 18 17 52 52 H 1.09002 * 109.49812 * 301.33160 * 28 15 14 53 53 H 1.08995 * 109.50353 * 61.39823 * 28 15 14 54 54 H 1.09003 * 109.47106 * 300.00352 * 29 9 8 55 55 H 1.08992 * 109.47025 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 1 1.6461 -0.3200 2.0688 6 6 1.5050 -2.2124 1.0491 7 6 2.0539 -3.0104 2.2336 8 6 3.5833 -2.9874 2.1991 9 6 4.0739 -1.5409 2.2875 10 1 3.7247 -1.0952 3.2189 11 7 5.5384 -1.5191 2.2550 12 6 6.2403 -1.6905 3.3927 13 8 5.6580 -1.8628 4.4461 14 7 7.5875 -1.6699 3.3629 15 6 8.3506 -1.8568 4.5995 16 6 8.4915 -0.5136 5.3194 17 6 9.2595 -0.7189 6.6289 18 7 10.5371 -1.3795 6.3291 19 6 11.7198 -0.8379 6.7567 20 1 12.6298 -1.0246 6.2057 21 6 11.7492 -0.0487 7.8983 22 7 10.7495 -0.0906 8.7532 23 14 13.2079 1.0728 8.2211 24 1 13.3391 2.0470 7.1082 25 1 12.9978 1.8033 9.4968 26 1 14.4466 0.2591 8.3154 27 6 10.5217 -2.6321 5.5612 28 6 9.7392 -2.4053 4.2637 29 6 3.5250 -0.7430 1.1030 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3633 -1.0253 -0.0708 33 1 3.0827 1.3434 -0.0709 34 1 1.5897 1.9164 -0.8524 35 1 1.7043 1.8724 0.9233 36 1 0.4154 -2.2288 1.0733 37 1 1.8544 -2.6584 0.1179 38 1 1.7047 -2.5646 3.1650 39 1 1.7048 -4.0410 2.1704 40 1 3.9744 -3.5556 3.0432 41 1 3.9325 -3.4333 1.2678 42 1 6.0028 -1.3812 1.4147 43 1 8.0520 -1.5320 2.5225 44 1 7.8279 -2.5620 5.2456 45 1 9.0360 0.1846 4.6837 46 1 7.5018 -0.1122 5.5374 47 1 8.6736 -1.3449 7.3021 48 1 9.4486 0.2472 7.0970 49 1 10.7702 0.4605 9.5511 50 1 10.0388 -3.4139 6.1472 51 1 11.5435 -2.9282 5.3245 52 1 9.6378 -3.3504 3.7302 53 1 10.2717 -1.6895 3.6376 54 1 3.8741 -1.1888 0.1716 55 1 3.8748 0.2874 1.1658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749567870.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:33 Heat of formation + Delta-G solvation = -38.087791 kcal Electronic energy + Delta-G solvation = -30408.432847 eV Core-core repulsion = 26479.256302 eV Total energy + Delta-G solvation = -3929.176545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41906 -40.21057 -39.02872 -37.11719 -35.91419 -34.85730 -33.79282 -31.83974 -31.44726 -30.92455 -29.93818 -28.24848 -26.81453 -25.12269 -24.04487 -23.87261 -22.99783 -22.22464 -21.53056 -21.10181 -20.72811 -19.25941 -18.65511 -17.76194 -16.97658 -16.67306 -16.29324 -16.06664 -15.86071 -15.72308 -15.43172 -15.35016 -15.21683 -15.08986 -14.91846 -14.74359 -14.35172 -14.26561 -14.01860 -13.69745 -13.34938 -13.18104 -13.00432 -12.96085 -12.64665 -12.60401 -12.55576 -12.39952 -12.32781 -12.17436 -12.10796 -12.07460 -11.85408 -11.58041 -11.55190 -11.48041 -11.36877 -11.28275 -11.05312 -10.56981 -10.23823 -9.71289 -9.31614 -8.71513 -7.86712 -5.32697 1.47660 1.50457 1.57312 1.70230 2.21131 2.52198 2.91506 3.25465 3.32556 3.67524 3.72570 3.85639 3.88900 3.94864 4.10907 4.13743 4.25910 4.29586 4.35851 4.41616 4.44463 4.46530 4.48732 4.52225 4.61715 4.67920 4.71398 4.73948 4.81212 4.87056 4.91201 5.00072 5.03578 5.04888 5.09595 5.10914 5.12660 5.14266 5.16631 5.25304 5.31432 5.32772 5.43359 5.47122 5.60933 5.63620 5.64793 5.69900 6.07423 6.10274 6.11001 6.38805 7.13471 7.19044 7.66827 7.84896 8.37826 9.20288 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.001997 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.596373 B =14020.786203 C =14542.303132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.017 3.983 4 C 0.089 3.911 5 H 0.029 0.971 6 C -0.105 4.105 7 C -0.112 4.112 8 C -0.125 4.125 9 C 0.168 3.832 10 H 0.054 0.946 11 N -0.727 5.727 12 C 0.699 3.301 13 O -0.638 6.638 14 N -0.726 5.726 15 C 0.182 3.818 16 C -0.129 4.129 17 C 0.183 3.817 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.075 0.925 21 C -0.057 4.057 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.272 1.272 27 C 0.141 3.859 28 C -0.120 4.120 29 C -0.108 4.108 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.411 0.589 43 H 0.411 0.589 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.041 0.959 47 H -0.013 1.013 48 H 0.055 0.945 49 H 0.249 0.751 50 H 0.011 0.989 51 H 0.069 0.931 52 H 0.091 0.909 53 H 0.076 0.924 54 H 0.091 0.909 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.761 -2.447 -24.401 30.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.270 5.270 3 C -0.131 4.131 4 C -0.020 4.020 5 H 0.047 0.953 6 C -0.143 4.143 7 C -0.151 4.151 8 C -0.163 4.163 9 C 0.063 3.937 10 H 0.072 0.928 11 N -0.383 5.383 12 C 0.398 3.602 13 O -0.519 6.519 14 N -0.381 5.381 15 C 0.076 3.924 16 C -0.170 4.170 17 C 0.056 3.944 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.092 0.908 21 C -0.252 4.252 22 N -0.585 5.585 23 Si 0.798 3.202 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.198 1.198 27 C 0.015 3.985 28 C -0.159 4.159 29 C -0.146 4.146 30 H 0.039 0.961 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.248 0.752 43 H 0.247 0.753 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.006 0.994 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.029 0.971 51 H 0.087 0.913 52 H 0.109 0.891 53 H 0.094 0.906 54 H 0.110 0.890 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.128 -2.750 -23.751 30.620 hybrid contribution 0.694 1.265 1.256 1.913 sum -18.434 -1.485 -22.495 29.121 Atomic orbital electron populations 1.22499 0.86635 1.03091 1.00667 1.62064 1.08599 1.13968 1.42407 1.22507 1.01504 0.88495 1.00612 1.21550 0.94058 0.95029 0.91340 0.95329 1.21594 1.00803 0.93037 0.98858 1.21451 0.94077 1.01170 0.98397 1.21895 0.96513 0.95960 1.01969 1.20704 0.77938 0.96224 0.98874 0.92769 1.44996 1.06726 1.77946 1.08651 1.16196 0.82130 0.77600 0.84226 1.90907 1.70330 1.58935 1.31743 1.45101 1.03889 1.77506 1.11554 1.20474 0.91632 0.95703 0.84571 1.22311 0.98517 0.97784 0.98357 1.20468 0.85021 0.96810 0.92105 1.44348 1.02518 1.23199 1.63185 1.19543 0.88343 1.26500 1.04726 0.90763 1.25889 1.00478 1.03613 0.95176 1.70207 1.34758 1.42127 1.11431 0.85297 0.79346 0.79001 0.76539 1.20223 1.22454 1.19793 1.21055 0.98892 0.87380 0.91182 1.22129 0.93367 1.01847 0.98602 1.21783 0.94684 1.00331 0.97834 0.96085 0.90490 0.90234 0.90633 0.90392 0.96283 0.90818 0.90269 0.92958 0.90243 0.94097 0.90215 0.75214 0.75300 0.92870 0.92102 0.94042 0.99447 0.92692 0.94206 0.97102 0.91259 0.89071 0.90562 0.89014 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.21 127.69 1.18 1.38 16 2 N -0.55 -7.07 4.89 -923.27 -4.51 -11.59 16 3 C 0.02 0.20 9.11 127.69 1.16 1.36 16 4 C 0.09 1.26 1.95 44.92 0.09 1.34 16 5 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 6 C -0.11 -1.28 4.97 30.59 0.15 -1.13 16 7 C -0.11 -1.68 5.92 30.59 0.18 -1.50 16 8 C -0.12 -2.29 5.49 30.59 0.17 -2.12 16 9 C 0.17 3.31 2.45 44.99 0.11 3.42 16 10 H 0.05 1.44 7.57 -2.39 -0.02 1.43 16 11 N -0.73 -14.68 5.08 -457.82 -2.33 -17.00 16 12 C 0.70 20.87 8.49 179.06 1.52 22.39 16 13 O -0.64 -26.00 15.67 -3.98 -0.06 -26.07 16 14 N -0.73 -19.40 5.08 -457.70 -2.33 -21.72 16 15 C 0.18 6.33 2.42 45.02 0.11 6.44 16 16 C -0.13 -5.36 5.65 30.67 0.17 -5.19 16 17 C 0.18 9.45 5.31 86.36 0.46 9.91 16 18 N -0.61 -31.05 2.99 -699.08 -2.09 -33.15 16 19 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16 20 H 0.07 3.88 7.89 -2.91 -0.02 3.86 16 21 C -0.06 -3.22 4.91 84.86 0.42 -2.80 16 22 N -0.94 -57.50 11.19 21.65 0.24 -57.26 16 23 Si 0.97 45.29 29.59 68.60 2.03 47.32 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.14 5.72 6.52 86.36 0.56 6.28 16 28 C -0.12 -3.72 5.55 30.67 0.17 -3.54 16 29 C -0.11 -1.51 4.31 30.60 0.13 -1.38 16 30 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.08 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.08 0.72 6.30 -2.39 -0.02 0.70 16 33 H 0.08 0.86 6.23 -2.38 -0.01 0.84 16 34 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 35 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.07 0.78 6.40 -2.39 -0.02 0.77 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.41 5.31 8.62 -92.71 -0.80 4.52 16 43 H 0.41 7.69 8.62 -92.71 -0.80 6.89 16 44 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 45 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 47 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 48 H 0.05 3.19 6.04 -2.39 -0.01 3.18 16 49 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 50 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 52 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 53 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 54 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 55 H 0.07 1.01 6.34 -2.39 -0.02 1.00 16 Total: -1.00 -73.73 413.85 -2.39 -76.12 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.73 Total: 22.05 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 7.39 Total: 21.30 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -11.01 Total: -140.72 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.06 Total: -26.07 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -73.73 -2.39 -76.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749567870.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.031 kcal (2) G-P(sol) polarization free energy of solvation -73.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds