Wall clock time and date at job start Tue Mar 31 2020 22:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 O 1.45206 * 109.47226 * 119.99431 * 2 1 3 13 13 C 1.34737 * 117.00373 * 270.00295 * 12 2 1 14 14 O 1.21478 * 119.99997 * 359.97438 * 13 12 2 15 15 C 1.47677 * 120.00146 * 179.97438 * 13 12 2 16 16 N 1.32340 * 120.59258 * 359.97438 * 15 13 12 17 17 C 1.32671 * 121.20523 * 179.97438 * 16 15 13 18 18 C 1.35507 * 122.12698 * 359.97438 * 17 16 15 19 19 N 1.36247 * 120.52068 * 0.02562 * 18 17 16 20 20 C 1.36167 * 133.93876 * 180.02562 * 19 18 17 21 21 Br 1.89098 * 126.43333 * 359.97438 * 20 19 18 22 22 C 1.35425 * 107.12837 * 179.37259 * 20 19 18 23 23 N 1.33604 * 108.61076 * 0.51772 * 22 20 19 24 24 C 1.31818 * 109.15269 * 359.53847 * 23 22 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.07998 * 118.93928 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.73436 * 179.97438 * 18 17 16 31 31 H 1.07996 * 125.69259 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 8 2.0140 -0.6844 1.1857 13 6 2.2179 0.0670 2.2853 14 8 1.9978 1.2612 2.2544 15 6 2.7090 -0.5613 3.5283 16 7 2.9521 -1.8613 3.5753 17 6 3.3940 -2.4383 4.6853 18 6 3.6195 -1.7359 5.8220 19 7 3.3952 -0.3926 5.8613 20 6 3.5246 0.5591 6.8265 21 35 4.1179 0.2855 8.6010 22 6 3.1615 1.7405 6.2729 23 7 2.8058 1.5251 5.0033 24 6 2.9408 0.2431 4.7279 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 3.5808 -3.5020 4.6827 30 1 3.9790 -2.2451 6.7039 31 1 3.1526 2.6960 6.7764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770128909.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:30 Heat of formation + Delta-G solvation = 33.160391 kcal Electronic energy + Delta-G solvation = -20524.818888 eV Core-core repulsion = 17048.129240 eV Total energy + Delta-G solvation = -3476.689648 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.39027 -39.59103 -38.60441 -35.80005 -34.69206 -33.23122 -32.35550 -30.94754 -29.52637 -29.05598 -25.97659 -25.27269 -23.56356 -22.93646 -21.64508 -20.07675 -18.83482 -18.13358 -16.78244 -16.72099 -16.26124 -15.89518 -15.61723 -15.04125 -14.86075 -14.45418 -14.17925 -13.76167 -13.29275 -12.92894 -12.26542 -12.01325 -11.80655 -11.47838 -11.32423 -11.20419 -11.03499 -10.82278 -10.50515 -10.39163 -10.37201 -10.25232 -9.85311 -9.54483 -9.28960 -8.90281 -8.54433 -8.46166 -6.15562 -4.22314 -0.24492 0.61943 0.68766 1.98186 2.32919 2.62670 2.94292 3.29744 3.32980 3.36688 3.57243 3.61223 3.87379 3.98513 4.32992 4.49338 4.68808 4.83196 5.15243 5.17749 5.38908 5.79375 5.94418 6.18851 6.62672 6.89896 6.92077 7.08299 7.15457 7.37396 7.58962 7.72695 7.90680 8.14013 8.54634 8.87469 9.42463 10.91951 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.002616 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.845534 B =10699.550935 C =11153.846276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.050 0.950 4 C -0.520 4.520 5 H 0.071 0.929 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.328 6.328 13 C 0.509 3.491 14 O -0.470 6.470 15 C 0.206 3.794 16 N -0.389 5.389 17 C 0.043 3.957 18 C 0.028 3.972 19 N -0.341 5.341 20 C -0.077 4.077 21 Br 0.033 6.967 22 C 0.086 3.914 23 N -0.426 5.426 24 C 0.218 3.782 25 H 0.038 0.962 26 H 0.101 0.899 27 H 0.017 0.983 28 H 0.267 0.733 29 H 0.192 0.808 30 H 0.178 0.822 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.828 -4.337 24.985 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.558 4.558 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.200 1.200 12 O -0.242 6.242 13 C 0.348 3.652 14 O -0.355 6.355 15 C 0.042 3.958 16 N -0.104 5.104 17 C -0.099 4.099 18 C -0.098 4.098 19 N -0.016 5.016 20 C -0.270 4.270 21 Br 0.116 6.884 22 C -0.070 4.070 23 N -0.145 5.145 24 C -0.030 4.030 25 H 0.058 0.942 26 H 0.120 0.880 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.209 0.791 30 H 0.196 0.804 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.525 -4.020 24.260 25.442 hybrid contribution 0.601 -0.512 0.330 0.855 sum 7.126 -4.531 24.590 26.000 Atomic orbital electron populations 1.22184 0.97262 1.00328 1.01585 1.20805 0.91598 0.94091 0.77258 0.93197 1.20977 1.32618 1.13593 0.88640 0.91120 1.24878 0.94928 0.95107 0.99011 1.69885 1.35964 1.22524 1.24324 0.86309 0.79217 0.79531 0.80923 1.19908 1.21067 1.19971 1.86667 1.75044 1.42369 1.20166 1.19809 0.76709 0.84993 0.83682 1.90912 1.46107 1.14879 1.83587 1.21473 0.97098 0.87448 0.89821 1.68367 1.06901 1.08710 1.26422 1.22376 0.99321 1.01836 0.86317 1.22927 1.02563 0.81290 1.02976 1.42681 1.40702 1.07237 1.10950 1.22863 1.22076 0.90988 0.91085 1.96779 1.88241 1.97254 1.06158 1.22923 0.97106 0.96868 0.90145 1.70876 1.19244 1.10800 1.13576 1.22513 1.03174 0.89405 0.87870 0.94236 0.88033 0.96365 0.92307 0.79100 0.80440 0.78437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.33 37.16 0.35 -3.64 16 2 C 0.21 5.83 2.56 -27.89 -0.07 5.76 16 3 H 0.05 1.48 7.16 -51.93 -0.37 1.11 16 4 C -0.52 -14.71 8.90 -34.44 -0.31 -15.01 16 5 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.91 21.17 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 O -0.33 -8.08 9.71 -40.59 -0.39 -8.48 16 13 C 0.51 11.45 7.93 34.59 0.27 11.72 16 14 O -0.47 -11.58 15.49 -19.25 -0.30 -11.87 16 15 C 0.21 3.74 6.96 -80.56 -0.56 3.18 16 16 N -0.39 -6.10 10.22 -8.70 -0.09 -6.19 16 17 C 0.04 0.44 11.01 -18.16 -0.20 0.24 16 18 C 0.03 0.26 10.98 -16.57 -0.18 0.08 16 19 N -0.34 -4.28 2.95 -59.33 -0.18 -4.46 16 20 C -0.08 -0.87 7.50 -16.63 -0.12 -0.99 16 21 Br 0.03 0.26 34.09 -68.01 -2.32 -2.06 16 22 C 0.09 1.07 11.81 -17.78 -0.21 0.86 16 23 N -0.43 -7.24 10.74 -11.23 -0.12 -7.36 16 24 C 0.22 3.61 7.67 -153.91 -1.18 2.43 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.10 2.75 6.07 -51.93 -0.32 2.44 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -33.09 305.13 -7.85 -40.93 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: -2.35 Total: -2.85 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -2.31 Total: 6.27 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.24 Total: -42.69 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.69 Total: -20.35 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 35 Polarization: 0.26 SS G_CDS: -2.32 Total: -2.06 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.09 -7.85 -40.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770128909.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.095 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds