Wall clock time and date at job start Tue Mar 31 2020 22:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 O 1.45206 * 109.47226 * 119.99431 * 2 1 3 13 13 C 1.34737 * 117.00373 * 270.00295 * 12 2 1 14 14 O 1.21478 * 119.99997 * 359.97438 * 13 12 2 15 15 C 1.47677 * 120.00146 * 179.97438 * 13 12 2 16 16 N 1.32340 * 120.59258 * 359.97438 * 15 13 12 17 17 C 1.32671 * 121.20523 * 179.97438 * 16 15 13 18 18 C 1.35507 * 122.12698 * 359.97438 * 17 16 15 19 19 N 1.36247 * 120.52068 * 0.02562 * 18 17 16 20 20 C 1.36167 * 133.93876 * 180.02562 * 19 18 17 21 21 Br 1.89098 * 126.43333 * 359.97438 * 20 19 18 22 22 C 1.35425 * 107.12837 * 179.37259 * 20 19 18 23 23 N 1.33604 * 108.61076 * 0.51772 * 22 20 19 24 24 C 1.31818 * 109.15269 * 359.53847 * 23 22 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.07998 * 118.93928 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.73436 * 179.97438 * 18 17 16 31 31 H 1.07996 * 125.69259 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 8 2.0140 -0.6844 1.1857 13 6 2.2179 0.0670 2.2853 14 8 1.9978 1.2612 2.2544 15 6 2.7090 -0.5613 3.5283 16 7 2.9521 -1.8613 3.5753 17 6 3.3940 -2.4383 4.6853 18 6 3.6195 -1.7359 5.8220 19 7 3.3952 -0.3926 5.8613 20 6 3.5246 0.5591 6.8265 21 35 4.1179 0.2855 8.6010 22 6 3.1615 1.7405 6.2729 23 7 2.8058 1.5251 5.0033 24 6 2.9408 0.2431 4.7279 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 3.5808 -3.5020 4.6827 30 1 3.9790 -2.2451 6.7039 31 1 3.1526 2.6960 6.7764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770128909.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:29 Heat of formation + Delta-G solvation = 11.850900 kcal Electronic energy + Delta-G solvation = -20525.742937 eV Core-core repulsion = 17048.129240 eV Total energy + Delta-G solvation = -3477.613697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.40064 -41.30410 -39.73420 -37.67647 -35.81055 -35.30396 -33.20481 -32.17328 -31.43525 -30.01568 -27.49061 -27.16323 -24.60350 -24.29402 -23.08406 -21.76930 -19.91016 -19.60775 -18.63156 -17.85844 -17.77314 -17.41882 -16.78393 -16.66386 -16.48714 -15.66853 -15.09782 -15.04775 -14.53063 -14.51222 -14.12668 -13.86036 -13.25609 -13.03891 -12.95918 -12.80241 -12.38526 -12.26999 -12.16562 -12.11171 -11.86529 -11.60867 -11.50666 -11.19667 -11.01034 -10.59024 -10.27135 -9.46727 -8.27225 -6.44397 -1.36070 -0.30421 -0.26500 1.00839 1.17680 1.41648 1.43017 1.48147 1.54252 1.63159 2.26562 2.37732 2.52887 2.86292 2.99588 3.03614 3.48798 3.77202 3.95628 4.00665 4.40677 4.49641 4.68367 4.78533 4.81646 5.04423 5.08648 5.26594 5.46517 5.59249 5.82983 6.01084 6.14626 6.35332 6.58270 6.83161 7.26078 8.80693 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.002616 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.845534 B =10699.550935 C =11153.846276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.011 0.989 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.986 3.014 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.268 1.268 12 O -0.337 6.337 13 C 0.507 3.493 14 O -0.508 6.508 15 C 0.150 3.850 16 N -0.394 5.394 17 C 0.031 3.969 18 C 0.069 3.931 19 N -0.340 5.340 20 C -0.072 4.072 21 Br 0.078 6.922 22 C 0.081 3.919 23 N -0.482 5.482 24 C 0.202 3.798 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.022 0.978 28 H 0.272 0.728 29 H 0.243 0.757 30 H 0.234 0.766 31 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 -6.792 27.492 29.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.029 0.971 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.808 3.192 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.193 1.193 12 O -0.252 6.252 13 C 0.349 3.651 14 O -0.396 6.396 15 C -0.010 4.010 16 N -0.110 5.110 17 C -0.112 4.112 18 C -0.057 4.057 19 N -0.015 5.015 20 C -0.264 4.264 21 Br 0.160 6.840 22 C -0.075 4.075 23 N -0.202 5.202 24 C -0.046 4.046 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.259 0.741 30 H 0.250 0.750 31 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 8.016 -6.444 26.786 28.693 hybrid contribution 0.245 0.186 -0.099 0.323 sum 8.260 -6.258 26.688 28.629 Atomic orbital electron populations 1.22000 0.96467 1.00573 1.00955 1.20516 0.92256 0.92287 0.78580 0.97106 1.21241 1.33657 1.14055 0.89677 0.91292 1.25851 0.94655 0.95672 1.02104 1.70010 1.36441 1.23617 1.25382 0.85195 0.78766 0.78651 0.76556 1.18689 1.20120 1.19329 1.86634 1.75643 1.42439 1.20464 1.20534 0.75524 0.84795 0.84264 1.90859 1.47970 1.16395 1.84327 1.20482 1.02903 0.88799 0.88827 1.68201 1.05694 1.07719 1.29374 1.23236 0.99059 1.03842 0.85026 1.23930 0.97698 0.79788 1.04237 1.42942 1.39989 1.08495 1.10082 1.23244 1.20525 0.90226 0.92391 1.96844 1.87667 1.97056 1.02399 1.23515 0.96220 0.98801 0.88916 1.70789 1.21344 1.11882 1.16198 1.22120 1.04365 0.89627 0.88477 0.93364 0.89641 0.95880 0.91882 0.74139 0.74990 0.75629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.67 9.33 71.98 0.67 -7.00 16 2 C 0.22 12.51 2.56 29.85 0.08 12.59 16 3 H 0.01 0.71 7.16 -2.39 -0.02 0.70 16 4 C -0.55 -32.19 8.90 25.60 0.23 -31.96 16 5 H 0.07 3.95 7.81 -2.91 -0.02 3.93 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -53.70 11.32 21.45 0.24 -53.45 16 8 Si 0.99 43.60 29.54 68.60 2.03 45.63 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 12 O -0.34 -17.70 9.71 -56.47 -0.55 -18.24 16 13 C 0.51 24.58 7.93 70.32 0.56 25.13 16 14 O -0.51 -27.34 15.49 19.91 0.31 -27.04 16 15 C 0.15 5.72 6.96 43.66 0.30 6.02 16 16 N -0.39 -12.19 10.22 -181.43 -1.85 -14.05 16 17 C 0.03 0.53 11.01 83.93 0.92 1.45 16 18 C 0.07 0.99 10.98 83.38 0.92 1.90 16 19 N -0.34 -7.76 2.95 -341.62 -1.01 -8.77 16 20 C -0.07 -1.43 7.50 83.37 0.63 -0.81 16 21 Br 0.08 0.90 34.09 -20.37 -0.69 0.21 16 22 C 0.08 1.93 11.81 83.77 0.99 2.92 16 23 N -0.48 -16.98 10.74 -189.45 -2.03 -19.01 16 24 C 0.20 6.79 7.67 135.57 1.04 7.83 16 25 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.09 4.87 6.07 -2.39 -0.01 4.85 16 27 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.24 1.54 8.06 -2.91 -0.02 1.51 16 30 H 0.23 0.74 8.06 -2.91 -0.02 0.71 16 31 H 0.23 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -78.98 305.13 4.40 -74.58 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: 1.19 Total: 0.67 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 6.78 Total: 19.49 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -4.65 Total: -95.28 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.24 Total: -45.28 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 35 Polarization: 0.90 SS G_CDS: -0.69 Total: 0.21 kcal Total: -78.98 4.40 -74.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770128909.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.428 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds