Wall clock time and date at job start Tue Mar 31 2020 22:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48505 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46987 * 299.99247 * 3 2 1 6 6 H 1.48495 * 109.47539 * 59.99357 * 3 2 1 7 7 C 1.39948 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00597 * 197.88554 * 7 2 1 9 9 C 1.41400 * 119.99542 * 17.88124 * 7 2 1 10 10 C 1.40728 * 120.24575 * 24.36921 * 9 7 2 11 11 C 1.37599 * 119.74476 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24998 * 359.72341 * 11 10 9 13 13 C 1.38620 * 120.49932 * 0.55179 * 12 11 10 14 14 S 1.76192 * 119.87527 * 179.72256 * 13 12 11 15 15 O 1.42102 * 106.40027 * 156.19154 * 14 13 12 16 16 O 1.42094 * 106.40523 * 23.26494 * 14 13 12 17 17 N 1.65611 * 107.21746 * 269.72699 * 14 13 12 18 18 C 1.38995 * 119.99804 * 65.00260 * 17 14 13 19 19 C 1.39299 * 120.08399 * 180.02562 * 18 17 14 20 20 N 1.31944 * 119.92362 * 179.97438 * 19 18 17 21 21 C 1.32231 * 120.10249 * 0.02562 * 20 19 18 22 22 C 1.38339 * 120.17588 * 0.02562 * 21 20 19 23 23 Cl 1.73601 * 119.96583 * 179.97438 * 22 21 20 24 24 N 1.32336 * 120.06831 * 359.68600 * 22 21 20 25 25 C 1.37640 * 120.24365 * 359.44979 * 13 12 11 26 26 H 0.96996 * 120.00052 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.12599 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87159 * 180.02562 * 11 10 9 29 29 H 1.07997 * 119.75391 * 180.30004 * 12 11 10 30 30 H 0.97001 * 119.99676 * 244.99785 * 17 14 13 31 31 H 1.07994 * 120.04044 * 359.97438 * 19 18 17 32 32 H 1.08007 * 119.91313 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.12342 * 180.24950 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2345 0.2878 9 6 1.3522 -2.4071 -0.3749 10 6 0.2210 -2.3624 -1.2108 11 6 -0.4096 -3.5317 -1.5694 12 6 0.0690 -4.7511 -1.1150 13 6 1.1791 -4.8067 -0.2866 14 16 1.7689 -6.3647 0.2871 15 8 3.1423 -6.1821 0.6031 16 8 1.3075 -7.3354 -0.6423 17 7 0.9983 -6.6839 1.7179 18 6 -0.3775 -6.8807 1.7374 19 6 -1.0275 -7.1488 2.9399 20 7 -2.3337 -7.3345 2.9548 21 6 -3.0261 -7.2671 1.8303 22 6 -2.3846 -7.0022 0.6336 23 17 -3.2989 -6.9155 -0.8396 24 7 -1.0756 -6.8091 0.6115 25 6 1.8256 -3.6497 0.0848 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1513 -1.4139 -1.5689 28 1 -1.2776 -3.4998 -2.2111 29 1 -0.4292 -5.6642 -1.4053 30 1 1.5072 -6.7336 2.5422 31 1 -0.4630 -7.2045 3.8589 32 1 -4.0951 -7.4201 1.8460 33 1 2.6927 -3.6956 0.7270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788220031.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:16 Heat of formation + Delta-G solvation = -26.709585 kcal Electronic energy + Delta-G solvation = -24421.229367 eV Core-core repulsion = 20599.124119 eV Total energy + Delta-G solvation = -3822.105248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.33850 -39.46029 -38.42590 -37.95838 -37.14261 -37.01832 -35.67202 -34.95580 -31.91114 -31.62096 -31.11850 -27.33955 -26.06623 -25.22463 -23.69561 -22.81198 -21.07538 -19.97893 -19.87645 -18.90717 -17.98763 -17.79752 -17.75066 -16.96443 -16.79102 -16.55368 -16.39621 -16.15839 -15.27451 -15.08683 -14.33820 -14.20704 -13.81876 -13.70490 -13.61387 -13.34805 -13.27580 -13.19536 -13.15780 -13.05714 -12.88792 -12.80714 -12.57089 -12.46992 -12.19399 -11.70907 -11.52720 -11.27562 -11.15177 -10.46145 -9.89383 -9.73832 -9.54742 -8.73449 -6.44654 -0.79643 -0.46200 -0.12977 0.36671 0.52720 0.84846 1.37062 1.43992 1.51964 1.67277 2.17149 2.35066 2.52304 2.61336 2.91065 3.09960 3.22204 3.38022 3.52949 3.83421 4.13683 4.29186 4.36595 4.54020 4.83718 4.88956 5.04999 5.08454 5.19886 5.37604 5.41508 5.58694 5.90702 5.93222 6.04884 6.08992 6.44586 6.51702 6.79925 6.84174 8.24817 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.004216 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.315967 B = 6639.974982 C = 7425.758583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.060 3.940 10 C -0.133 4.133 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.638 4.638 14 S 2.712 3.288 15 O -0.975 6.975 16 O -0.959 6.959 17 N -1.013 6.013 18 C 0.343 3.657 19 C 0.048 3.952 20 N -0.400 5.400 21 C 0.045 3.955 22 C 0.156 3.844 23 Cl -0.005 7.005 24 N -0.502 5.502 25 C -0.146 4.146 26 H 0.291 0.709 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.455 0.545 31 H 0.223 0.777 32 H 0.214 0.786 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 -10.775 6.235 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.057 3.943 10 C -0.152 4.152 11 C -0.149 4.149 12 C -0.136 4.136 13 C -0.728 4.728 14 S 2.806 3.194 15 O -0.965 6.965 16 O -0.949 6.949 17 N -0.764 5.764 18 C 0.105 3.895 19 C -0.119 4.119 20 N -0.113 5.113 21 C -0.115 4.115 22 C -0.011 4.011 23 Cl 0.023 6.977 24 N -0.226 5.226 25 C -0.167 4.167 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.297 0.703 31 H 0.239 0.761 32 H 0.231 0.769 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.867 -11.168 5.573 13.792 hybrid contribution 0.190 1.625 -0.181 1.646 sum -5.677 -9.543 5.392 12.344 Atomic orbital electron populations 1.69822 1.08946 1.30843 1.35437 1.26723 0.95488 1.04457 0.91016 0.85155 0.79446 0.76096 0.79055 1.18236 1.18853 1.18878 1.19854 0.98565 0.92175 1.42147 0.90235 1.18004 0.92645 0.92983 0.90653 1.21661 0.98075 0.97512 0.97990 1.21104 0.99971 0.92796 1.01007 1.20490 0.95666 0.97832 0.99585 1.29914 1.09868 1.18244 1.14807 1.01258 0.71908 0.73785 0.72488 1.93557 1.31614 1.87365 1.83989 1.93533 1.81634 1.58922 1.60825 1.53296 1.12041 1.81223 1.29867 1.19038 0.85089 0.94271 0.91067 1.24027 0.91334 0.98792 0.97730 1.68613 1.06742 1.08348 1.27615 1.23893 1.03393 0.98918 0.85338 1.22771 0.88702 0.98693 0.90930 1.98436 1.69105 1.95998 1.34140 1.67036 1.09028 1.16688 1.29816 1.20875 1.01108 0.91940 1.02773 0.89834 0.86993 0.86248 0.85112 0.70253 0.76105 0.76923 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.45 10.95 21.83 0.24 -41.21 16 2 C 0.04 1.87 5.14 85.26 0.44 2.31 16 3 Si 0.98 37.04 29.59 68.60 2.03 39.07 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.50 -26.22 9.05 23.46 0.21 -26.01 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.06 3.20 5.58 -21.29 -0.12 3.08 16 10 C -0.13 -6.81 8.70 22.73 0.20 -6.61 16 11 C -0.13 -5.93 10.02 22.22 0.22 -5.71 16 12 C -0.11 -5.05 8.42 22.46 0.19 -4.86 16 13 C -0.64 -27.90 5.77 22.22 0.13 -27.77 16 14 S 2.71 97.84 5.39 -56.49 -0.30 97.54 16 15 O -0.98 -38.06 17.27 -128.00 -2.21 -40.27 16 16 O -0.96 -38.22 16.15 -128.00 -2.07 -40.29 16 17 N -1.01 -26.01 5.85 -55.18 -0.32 -26.33 16 18 C 0.34 9.07 7.33 133.02 0.98 10.04 16 19 C 0.05 0.94 11.08 84.93 0.94 1.88 16 20 N -0.40 -8.20 10.49 -194.57 -2.04 -10.24 16 21 C 0.04 0.90 10.99 84.66 0.93 1.83 16 22 C 0.16 4.09 7.28 84.64 0.62 4.71 16 23 Cl -0.01 -0.13 29.13 -2.72 -0.08 -0.21 16 24 N -0.50 -15.71 6.48 -183.54 -1.19 -16.90 16 25 C -0.15 -7.07 9.26 22.73 0.21 -6.86 16 26 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 27 H 0.11 5.92 6.15 -2.91 -0.02 5.90 16 28 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.13 5.42 6.56 -2.91 -0.02 5.40 16 30 H 0.46 7.43 8.83 -96.74 -0.85 6.58 16 31 H 0.22 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.11 5.27 7.60 -2.91 -0.02 5.25 16 Total: -1.00 -69.64 320.77 -0.66 -70.29 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.34 Total: 22.49 kcal Atomic # 6 Polarization: -58.90 SS G_CDS: 4.94 Total: -53.96 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -3.31 Total: -94.67 kcal Atomic # 8 Polarization: -76.28 SS G_CDS: -4.28 Total: -80.56 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 16 Polarization: 97.84 SS G_CDS: -0.30 Total: 97.54 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.08 Total: -0.21 kcal Total: -69.64 -0.66 -70.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788220031.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.584 kcal (2) G-P(sol) polarization free energy of solvation -69.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds