Wall clock time and date at job start Tue Mar 31 2020 22:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48496 * 109.47083 * 269.99835 * 3 2 1 5 5 H 1.48497 * 109.47037 * 29.99715 * 3 2 1 6 6 H 1.48500 * 109.46926 * 149.99858 * 3 2 1 7 7 C 1.39945 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00057 * 161.95592 * 7 2 1 9 9 C 1.41392 * 119.99693 * 341.96141 * 7 2 1 10 10 C 1.40737 * 120.24013 * 155.54469 * 9 7 2 11 11 C 1.37602 * 119.73942 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25368 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.49732 * 0.02562 * 12 11 10 14 14 S 1.76207 * 119.87193 * 180.02562 * 13 12 11 15 15 O 1.42097 * 106.40254 * 23.51983 * 14 13 12 16 16 O 1.42105 * 106.39764 * 156.43472 * 14 13 12 17 17 N 1.65592 * 107.21954 * 269.97536 * 14 13 12 18 18 C 1.39076 * 119.99757 * 65.00296 * 17 14 13 19 19 C 1.39284 * 120.07452 * 179.72418 * 18 17 14 20 20 N 1.31955 * 119.90448 * 179.73354 * 19 18 17 21 21 C 1.32341 * 120.07484 * 0.56500 * 20 19 18 22 22 Cl 1.73605 * 119.92169 * 179.70976 * 21 20 19 23 23 C 1.38314 * 120.15903 * 359.68725 * 21 20 19 24 24 N 1.32231 * 120.08565 * 0.02562 * 23 21 20 25 25 C 1.37633 * 120.25182 * 359.97438 * 13 12 11 26 26 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.12901 * 359.97438 * 10 9 7 28 28 H 1.08009 * 119.87309 * 180.02562 * 11 10 9 29 29 H 1.08002 * 119.75053 * 180.02562 * 12 11 10 30 30 H 0.97002 * 120.00157 * 245.00407 * 17 14 13 31 31 H 1.07997 * 120.04790 * 0.02562 * 19 18 17 32 32 H 1.07993 * 119.96114 * 180.02562 * 23 21 20 33 33 H 1.08004 * 120.13237 * 180.27865 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0482 -1.2350 -0.2892 9 6 1.3532 -2.4061 0.3803 10 6 1.8249 -3.6500 -0.0791 11 6 1.1794 -4.8058 0.2965 12 6 0.0681 -4.7481 1.1236 13 6 -0.4058 -3.5284 1.5810 14 16 -1.8191 -3.4743 2.6320 15 8 -1.9010 -4.7463 3.2600 16 8 -1.7343 -2.2543 3.3558 17 7 -3.1510 -3.3477 1.6564 18 6 -3.4826 -4.3873 0.7941 19 6 -4.6058 -4.2849 -0.0232 20 7 -4.9144 -5.2710 -0.8439 21 6 -4.1644 -6.3607 -0.8828 22 17 -4.5783 -7.6589 -1.9587 23 6 -3.0513 -6.4676 -0.0688 24 7 -2.7330 -5.4809 0.7519 25 6 0.2240 -2.3596 1.2183 26 1 -0.4850 0.8400 -0.0004 27 1 2.6895 -3.6972 -0.7244 28 1 1.5398 -5.7616 -0.0544 29 1 -0.4321 -5.6603 1.4136 30 1 -3.6999 -2.5485 1.6862 31 1 -5.2207 -3.3977 0.0114 32 1 -2.4413 -7.3581 -0.1035 33 1 -0.1442 -1.4107 1.5795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788220369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:19 Heat of formation + Delta-G solvation = -6.195185 kcal Electronic energy + Delta-G solvation = -24424.366748 eV Core-core repulsion = 20603.151071 eV Total energy + Delta-G solvation = -3821.215677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31404 -37.67715 -37.09208 -36.73712 -35.77366 -35.40978 -34.12585 -33.84111 -30.30910 -29.92794 -29.63495 -25.52323 -25.20459 -24.02362 -21.87973 -21.20014 -19.64056 -18.66698 -18.15078 -17.48857 -17.41364 -16.49775 -16.18225 -15.50191 -15.07851 -15.00970 -14.82000 -14.58804 -13.71729 -13.51632 -13.35660 -12.97656 -12.72687 -12.18447 -11.97969 -11.79646 -11.67171 -11.54589 -11.53097 -11.47298 -11.36655 -11.21226 -11.16052 -11.11746 -10.81557 -10.64300 -9.93188 -9.49393 -9.41692 -9.33396 -8.61963 -8.16923 -7.65159 -6.98261 -4.55358 0.52772 0.75711 0.89432 1.58584 2.11655 2.66933 2.96570 2.99252 3.01839 3.08462 3.40496 3.80923 3.87591 4.05254 4.15014 4.18420 4.42595 4.76200 4.83954 5.22854 5.24533 5.38628 5.97206 6.01047 6.34513 6.41941 6.48362 6.79842 6.84411 7.01262 7.05222 7.17281 7.42473 7.45459 7.63407 7.73548 7.96453 8.29751 8.63846 8.67820 9.99484 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.003883 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.577232 B = 7208.776499 C = 7605.174322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.088 3.912 10 C -0.178 4.178 11 C -0.115 4.115 12 C -0.132 4.132 13 C -0.635 4.635 14 S 2.676 3.324 15 O -0.945 6.945 16 O -0.957 6.957 17 N -1.024 6.024 18 C 0.355 3.645 19 C 0.045 3.955 20 N -0.403 5.403 21 C 0.074 3.926 22 Cl -0.020 7.020 23 C 0.133 3.867 24 N -0.451 5.451 25 C -0.061 4.061 26 H 0.285 0.715 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.436 0.564 31 H 0.181 0.819 32 H 0.186 0.814 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 -7.000 -1.539 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.084 3.916 10 C -0.198 4.198 11 C -0.134 4.134 12 C -0.153 4.153 13 C -0.729 4.729 14 S 2.774 3.226 15 O -0.935 6.935 16 O -0.947 6.947 17 N -0.768 5.768 18 C 0.117 3.883 19 C -0.123 4.123 20 N -0.119 5.119 21 C -0.094 4.094 22 Cl 0.008 6.992 23 C -0.029 4.029 24 N -0.172 5.172 25 C -0.082 4.082 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.273 0.727 31 H 0.198 0.802 32 H 0.202 0.798 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.852 -7.050 -0.621 11.333 hybrid contribution 0.435 1.171 -0.943 1.565 sum -8.417 -5.879 -1.564 10.385 Atomic orbital electron populations 1.69717 1.07751 1.29883 1.34884 1.25935 0.94808 1.01652 0.91909 0.86251 0.80716 0.80212 0.79306 1.19389 1.19786 1.18286 1.19576 0.98388 0.91024 1.40017 0.89974 1.17644 0.91586 0.92518 0.89808 1.21280 1.02197 0.92961 1.03399 1.20671 0.96636 0.96894 0.99193 1.20209 0.98649 0.94820 1.01637 1.29539 1.20159 1.00793 1.22440 1.02312 0.73368 0.73311 0.73577 1.93545 1.85720 1.41872 1.72400 1.93594 1.85984 1.46291 1.68846 1.53894 1.45902 1.23866 1.53157 1.19008 0.91670 0.87826 0.89752 1.23223 0.96452 0.98838 0.93807 1.67644 1.28021 0.99131 1.17061 1.22480 0.96084 0.92694 0.98095 1.98403 1.93722 1.43962 1.63101 1.23324 0.93261 0.97277 0.89025 1.68216 1.28390 0.99891 1.20678 1.21234 0.96882 0.95157 0.94968 0.90386 0.88289 0.88419 0.86245 0.72702 0.80170 0.79751 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.45 10.97 55.55 0.61 -18.84 16 2 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 17.93 29.60 -169.99 -5.03 12.90 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.62 9.05 -37.74 -0.34 -11.96 16 8 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 9 C 0.09 2.23 5.57 -106.83 -0.60 1.64 16 10 C -0.18 -4.10 9.80 -38.87 -0.38 -4.48 16 11 C -0.11 -2.41 10.02 -39.66 -0.40 -2.81 16 12 C -0.13 -2.79 8.42 -39.29 -0.33 -3.12 16 13 C -0.64 -14.08 5.77 -39.66 -0.23 -14.30 16 14 S 2.68 51.38 5.39 -107.50 -0.58 50.80 16 15 O -0.95 -19.33 16.16 -57.17 -0.92 -20.26 16 16 O -0.96 -20.30 17.26 -57.17 -0.99 -21.29 16 17 N -1.02 -15.13 5.85 31.22 0.18 -14.94 16 18 C 0.35 5.23 7.33 -154.68 -1.13 4.10 16 19 C 0.05 0.56 11.08 -17.11 -0.19 0.37 16 20 N -0.40 -5.34 10.47 -10.01 -0.10 -5.45 16 21 C 0.07 0.93 7.28 -17.30 -0.13 0.81 16 22 Cl -0.02 -0.21 29.12 -51.86 -1.51 -1.72 16 23 C 0.13 1.72 11.00 -17.35 -0.19 1.53 16 24 N -0.45 -7.13 6.47 -12.20 -0.08 -7.21 16 25 C -0.06 -1.51 8.16 -38.88 -0.32 -1.83 16 26 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 27 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.12 2.33 6.54 -52.49 -0.34 1.99 16 30 H 0.44 4.77 8.83 -34.47 -0.30 4.47 16 31 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.14 3.49 5.72 -52.48 -0.30 3.19 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -31.13 320.77 -10.10 -41.23 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -2.19 Total: 8.30 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -4.32 Total: -28.37 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.61 Total: -46.44 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -1.91 Total: -41.54 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: 51.38 SS G_CDS: -0.58 Total: 50.80 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.51 Total: -1.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.13 -10.10 -41.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788220369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.030 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds