Wall clock time and date at job start Tue Mar 31 2020 22:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48496 * 109.47083 * 269.99835 * 3 2 1 5 5 H 1.48497 * 109.47037 * 29.99715 * 3 2 1 6 6 H 1.48500 * 109.46926 * 149.99858 * 3 2 1 7 7 C 1.39945 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00057 * 161.95592 * 7 2 1 9 9 C 1.41392 * 119.99693 * 341.96141 * 7 2 1 10 10 C 1.40737 * 120.24013 * 155.54469 * 9 7 2 11 11 C 1.37602 * 119.73942 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25368 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.49732 * 0.02562 * 12 11 10 14 14 S 1.76207 * 119.87193 * 180.02562 * 13 12 11 15 15 O 1.42097 * 106.40254 * 23.51983 * 14 13 12 16 16 O 1.42105 * 106.39764 * 156.43472 * 14 13 12 17 17 N 1.65592 * 107.21954 * 269.97536 * 14 13 12 18 18 C 1.39076 * 119.99757 * 65.00296 * 17 14 13 19 19 C 1.39284 * 120.07452 * 179.72418 * 18 17 14 20 20 N 1.31955 * 119.90448 * 179.73354 * 19 18 17 21 21 C 1.32341 * 120.07484 * 0.56500 * 20 19 18 22 22 Cl 1.73605 * 119.92169 * 179.70976 * 21 20 19 23 23 C 1.38314 * 120.15903 * 359.68725 * 21 20 19 24 24 N 1.32231 * 120.08565 * 0.02562 * 23 21 20 25 25 C 1.37633 * 120.25182 * 359.97438 * 13 12 11 26 26 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.12901 * 359.97438 * 10 9 7 28 28 H 1.08009 * 119.87309 * 180.02562 * 11 10 9 29 29 H 1.08002 * 119.75053 * 180.02562 * 12 11 10 30 30 H 0.97002 * 120.00157 * 245.00407 * 17 14 13 31 31 H 1.07997 * 120.04790 * 0.02562 * 19 18 17 32 32 H 1.07993 * 119.96114 * 180.02562 * 23 21 20 33 33 H 1.08004 * 120.13237 * 180.27865 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0482 -1.2350 -0.2892 9 6 1.3532 -2.4061 0.3803 10 6 1.8249 -3.6500 -0.0791 11 6 1.1794 -4.8058 0.2965 12 6 0.0681 -4.7481 1.1236 13 6 -0.4058 -3.5284 1.5810 14 16 -1.8191 -3.4743 2.6320 15 8 -1.9010 -4.7463 3.2600 16 8 -1.7343 -2.2543 3.3558 17 7 -3.1510 -3.3477 1.6564 18 6 -3.4826 -4.3873 0.7941 19 6 -4.6058 -4.2849 -0.0232 20 7 -4.9144 -5.2710 -0.8439 21 6 -4.1644 -6.3607 -0.8828 22 17 -4.5783 -7.6589 -1.9587 23 6 -3.0513 -6.4676 -0.0688 24 7 -2.7330 -5.4809 0.7519 25 6 0.2240 -2.3596 1.2183 26 1 -0.4850 0.8400 -0.0004 27 1 2.6895 -3.6972 -0.7244 28 1 1.5398 -5.7616 -0.0544 29 1 -0.4321 -5.6603 1.4136 30 1 -3.6999 -2.5485 1.6862 31 1 -5.2207 -3.3977 0.0114 32 1 -2.4413 -7.3581 -0.1035 33 1 -0.1442 -1.4107 1.5795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788220369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:18 Heat of formation + Delta-G solvation = -27.036819 kcal Electronic energy + Delta-G solvation = -24425.270509 eV Core-core repulsion = 20603.151071 eV Total energy + Delta-G solvation = -3822.119438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.34860 -39.42338 -38.41906 -37.97133 -37.04579 -36.86096 -35.63043 -35.17017 -32.06862 -31.38966 -30.98605 -27.31366 -26.24752 -25.10117 -23.58454 -22.95772 -20.98481 -19.84541 -19.76848 -18.95596 -18.37226 -17.87945 -17.77629 -16.87669 -16.55189 -16.45827 -16.36357 -15.75430 -15.25874 -15.01422 -14.66310 -14.39507 -14.08482 -13.71679 -13.59296 -13.31395 -13.21258 -13.10779 -12.97051 -12.86586 -12.78952 -12.56661 -12.44626 -12.39699 -12.25862 -12.17526 -11.64502 -11.18933 -11.12792 -10.42647 -9.91387 -9.67219 -9.44208 -8.74179 -6.41534 -0.76964 -0.45005 -0.14346 0.37988 0.62664 0.94244 1.37521 1.45820 1.52279 1.67365 2.17624 2.33710 2.52699 2.61245 2.86628 3.07354 3.25310 3.40525 3.54112 3.78198 4.10794 4.37182 4.41232 4.64041 4.73116 4.98830 5.03079 5.09396 5.24126 5.40313 5.44113 5.65651 5.87375 5.94373 6.00889 6.20678 6.42673 6.47211 6.82616 6.86707 8.26011 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.003883 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.577232 B = 7208.776499 C = 7605.174322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.081 0.919 9 C 0.056 3.944 10 C -0.189 4.189 11 C -0.115 4.115 12 C -0.126 4.126 13 C -0.646 4.646 14 S 2.708 3.292 15 O -0.957 6.957 16 O -0.981 6.981 17 N -1.013 6.013 18 C 0.330 3.670 19 C 0.059 3.941 20 N -0.415 5.415 21 C 0.075 3.925 22 Cl -0.002 7.002 23 C 0.126 3.874 24 N -0.482 5.482 25 C -0.090 4.090 26 H 0.292 0.708 27 H 0.110 0.890 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.452 0.548 31 H 0.218 0.782 32 H 0.212 0.788 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 -7.763 -2.223 12.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.053 3.947 10 C -0.209 4.209 11 C -0.134 4.134 12 C -0.147 4.147 13 C -0.737 4.737 14 S 2.803 3.197 15 O -0.947 6.947 16 O -0.972 6.972 17 N -0.763 5.763 18 C 0.094 3.906 19 C -0.109 4.109 20 N -0.132 5.132 21 C -0.092 4.092 22 Cl 0.027 6.973 23 C -0.035 4.035 24 N -0.203 5.203 25 C -0.112 4.112 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.293 0.707 31 H 0.234 0.766 32 H 0.229 0.771 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.690 -7.829 -1.331 12.528 hybrid contribution 0.572 1.181 -0.794 1.534 sum -9.118 -6.648 -2.125 11.483 Atomic orbital electron populations 1.69759 1.08928 1.31032 1.35285 1.26728 0.95569 1.04526 0.91134 0.85251 0.79200 0.76034 0.79627 1.18401 1.19038 1.18376 1.19829 0.98685 0.92242 1.41996 0.90077 1.18026 0.92439 0.93658 0.90569 1.21542 1.02757 0.93022 1.03614 1.21083 0.96032 0.97850 0.98387 1.20561 0.98331 0.95148 1.00665 1.29982 1.21371 1.00324 1.22073 1.01292 0.73024 0.72391 0.72943 1.93522 1.86002 1.42355 1.72823 1.93556 1.86524 1.47310 1.69786 1.53333 1.44745 1.25058 1.53172 1.19238 0.92927 0.87754 0.90727 1.23724 0.95557 0.99522 0.92053 1.67773 1.28338 0.99586 1.17461 1.22701 0.95744 0.92885 0.97839 1.98412 1.93546 1.43000 1.62376 1.23744 0.93725 0.97517 0.88491 1.68111 1.29552 1.00837 1.21827 1.21086 0.98031 0.95405 0.96641 0.89701 0.87186 0.84714 0.84360 0.70726 0.76593 0.77136 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.20 10.97 21.83 0.24 -40.96 16 2 C 0.04 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 37.12 29.60 68.60 2.03 39.15 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.50 -25.92 9.05 23.46 0.21 -25.71 16 8 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 9 C 0.06 2.93 5.57 -21.29 -0.12 2.81 16 10 C -0.19 -8.74 9.80 22.73 0.22 -8.52 16 11 C -0.11 -4.66 10.02 22.22 0.22 -4.44 16 12 C -0.13 -5.21 8.42 22.46 0.19 -5.02 16 13 C -0.65 -28.74 5.77 22.22 0.13 -28.62 16 14 S 2.71 103.34 5.39 -56.49 -0.30 103.04 16 15 O -0.96 -38.35 16.16 -128.00 -2.07 -40.42 16 16 O -0.98 -42.13 17.26 -128.00 -2.21 -44.34 16 17 N -1.01 -28.95 5.85 -55.15 -0.32 -29.27 16 18 C 0.33 9.22 7.33 133.00 0.98 10.19 16 19 C 0.06 1.32 11.08 84.93 0.94 2.26 16 20 N -0.42 -10.07 10.47 -185.58 -1.94 -12.02 16 21 C 0.08 1.74 7.28 84.63 0.62 2.36 16 22 Cl 0.00 -0.03 29.12 -2.72 -0.08 -0.11 16 23 C 0.13 3.01 11.00 84.65 0.93 3.94 16 24 N -0.48 -14.44 6.47 -192.52 -1.25 -15.68 16 25 C -0.09 -4.61 8.16 22.73 0.19 -4.42 16 26 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 27 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 28 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.14 5.15 6.54 -2.91 -0.02 5.13 16 30 H 0.45 9.39 8.83 -96.75 -0.85 8.54 16 31 H 0.22 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.21 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.12 6.31 5.72 -2.91 -0.02 6.29 16 Total: -1.00 -67.81 320.77 -0.62 -68.42 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.34 Total: 25.17 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 4.94 Total: -52.99 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -3.27 Total: -97.93 kcal Atomic # 8 Polarization: -80.48 SS G_CDS: -4.28 Total: -84.76 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 103.34 SS G_CDS: -0.30 Total: 103.04 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -67.81 -0.62 -68.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788220369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.387 kcal (2) G-P(sol) polarization free energy of solvation -67.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds