Wall clock time and date at job start Tue Mar 31 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46903 * 110.99806 * 2 1 4 4 C 1.46902 * 110.99722 * 123.95236 * 2 1 3 5 5 H 1.08997 * 109.47012 * 300.00016 * 4 2 1 6 6 C 1.52993 * 109.47186 * 59.99863 * 4 2 1 7 7 C 1.53000 * 109.47124 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47314 * 299.99952 * 7 6 4 9 9 C 1.53006 * 109.46819 * 60.00104 * 8 7 6 10 10 H 1.08997 * 109.47218 * 59.99750 * 9 8 7 11 11 N 1.46493 * 109.47067 * 179.97438 * 9 8 7 12 12 C 1.34780 * 120.00199 * 274.99861 * 11 9 8 13 13 O 1.21583 * 119.99413 * 354.85514 * 12 11 9 14 14 N 1.34772 * 119.99763 * 174.85445 * 12 11 9 15 15 C 1.47084 * 120.87671 * 184.71447 * 14 12 11 16 16 C 1.53697 * 108.27747 * 128.75653 * 15 14 12 17 17 N 1.46897 * 109.25726 * 54.07917 * 16 15 14 18 18 C 1.46902 * 111.00140 * 172.60908 * 17 16 15 19 19 C 1.50704 * 109.47073 * 59.43070 * 18 17 16 20 20 H 1.08005 * 119.99842 * 355.06091 * 19 18 17 21 21 C 1.37871 * 119.99734 * 175.05134 * 19 18 17 22 22 N 1.31509 * 120.00382 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99645 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47141 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46891 * 120.00260 * 23 21 19 26 26 H 1.48499 * 109.47179 * 239.99879 * 23 21 19 27 27 C 1.46895 * 111.27178 * 296.75734 * 17 16 15 28 28 C 1.47074 * 120.88719 * 4.99144 * 14 12 11 29 29 C 1.53003 * 109.46772 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.46817 * 296.05340 * 1 2 3 31 31 H 1.08997 * 109.46749 * 56.04495 * 1 2 3 32 32 H 1.08996 * 109.47015 * 176.04742 * 1 2 3 33 33 H 1.09005 * 109.46834 * 183.95402 * 3 2 1 34 34 H 1.08994 * 109.47059 * 303.94786 * 3 2 1 35 35 H 1.08996 * 109.47471 * 63.95170 * 3 2 1 36 36 H 1.08999 * 109.47584 * 299.99978 * 6 4 2 37 37 H 1.09006 * 109.47116 * 59.99994 * 6 4 2 38 38 H 1.08997 * 109.46859 * 60.00285 * 7 6 4 39 39 H 1.09006 * 109.47114 * 179.97438 * 7 6 4 40 40 H 1.08997 * 109.47427 * 300.00541 * 8 7 6 41 41 H 1.08995 * 109.46936 * 179.97438 * 8 7 6 42 42 H 0.97003 * 120.00076 * 95.00117 * 11 9 8 43 43 H 1.09000 * 109.63131 * 248.52162 * 15 14 12 44 44 H 1.08999 * 109.62850 * 9.10280 * 15 14 12 45 45 H 1.09001 * 109.64355 * 294.07525 * 16 15 14 46 46 H 1.08997 * 109.44416 * 173.96016 * 16 15 14 47 47 H 1.08994 * 109.47426 * 179.44007 * 18 17 16 48 48 H 1.09004 * 109.46557 * 299.43908 * 18 17 16 49 49 H 0.96999 * 120.00379 * 179.97438 * 22 21 19 50 50 H 1.08994 * 109.49460 * 303.14671 * 27 17 16 51 51 H 1.08997 * 109.51606 * 183.07418 * 27 17 16 52 52 H 1.08997 * 109.62614 * 350.89604 * 28 14 12 53 53 H 1.09002 * 109.62734 * 111.28181 * 28 14 12 54 54 H 1.08997 * 109.47433 * 299.99841 * 29 4 2 55 55 H 1.09003 * 109.46831 * 60.00028 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.6459 -0.3200 2.0688 6 6 1.5048 -2.2124 1.0493 7 6 2.0536 -3.0103 2.2338 8 6 3.5831 -2.9876 2.1994 9 6 4.0737 -1.5410 2.2878 10 1 3.7245 -1.0952 3.2191 11 7 5.5381 -1.5192 2.2554 12 6 6.2400 -1.6906 3.3932 13 8 5.6601 -1.7696 4.4590 14 7 7.5844 -1.7743 3.3495 15 6 8.3625 -2.0637 4.5636 16 6 9.3139 -3.2319 4.2593 17 7 10.1149 -2.9076 3.0715 18 6 11.1577 -3.9178 2.8477 19 6 10.5163 -5.2683 2.6582 20 1 9.4489 -5.3809 2.7786 21 6 11.2921 -6.3600 2.3307 22 7 12.5918 -6.2230 2.1843 23 14 10.4970 -8.0339 2.0950 24 1 9.0325 -7.9215 2.3139 25 1 10.7551 -8.5144 0.7138 26 1 11.0712 -8.9963 3.0693 27 6 9.2665 -2.7546 1.8821 28 6 8.3127 -1.5728 2.0878 29 6 3.5249 -0.7437 1.1034 30 1 -0.3633 0.4514 0.9232 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0829 1.3432 -0.0709 34 1 1.5899 1.9163 -0.8524 35 1 1.7044 1.8724 0.9232 36 1 0.4152 -2.2287 1.0734 37 1 1.8544 -2.6584 0.1181 38 1 1.7044 -2.5645 3.1651 39 1 1.7037 -4.0408 2.1711 40 1 3.9323 -3.4333 1.2680 41 1 3.9739 -3.5556 3.0435 42 1 6.0027 -1.3814 1.4151 43 1 8.9385 -1.1831 4.8480 44 1 7.6878 -2.3407 5.3736 45 1 8.7353 -4.1365 4.0721 46 1 9.9749 -3.3927 5.1110 47 1 11.7294 -3.6587 1.9567 48 1 11.8235 -3.9497 3.7102 49 1 13.1377 -6.9911 1.9543 50 1 8.6886 -3.6657 1.7279 51 1 9.8927 -2.5689 1.0095 52 1 7.6051 -1.5251 1.2601 53 1 8.8812 -0.6441 2.1374 54 1 3.8741 -1.1899 0.1723 55 1 3.8748 0.2868 1.1661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868429705.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:21 Heat of formation + Delta-G solvation = -37.802402 kcal Electronic energy + Delta-G solvation = -30957.631710 eV Core-core repulsion = 27028.467540 eV Total energy + Delta-G solvation = -3929.164170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62266 -40.29076 -39.06131 -37.10830 -36.01047 -34.90752 -34.21149 -32.09598 -31.20225 -30.39614 -29.51983 -28.22687 -27.04741 -25.13411 -24.61435 -24.25988 -23.16584 -22.40423 -21.58881 -21.10548 -20.26826 -19.20796 -18.35034 -17.70223 -16.98258 -16.70989 -16.49376 -16.03333 -15.98396 -15.76652 -15.65366 -15.51959 -15.38912 -15.13589 -14.99747 -14.83783 -14.36240 -14.31311 -13.76705 -13.68274 -13.57149 -13.31801 -13.02862 -12.97309 -12.88949 -12.61496 -12.54311 -12.47951 -12.40924 -12.32083 -12.26805 -12.15227 -11.93842 -11.80934 -11.64960 -11.55515 -11.49108 -11.27075 -11.08642 -10.62838 -10.19511 -9.57868 -9.28845 -9.03317 -8.18199 -6.37098 1.32332 1.35031 1.45455 1.59775 2.12440 2.34383 2.80667 2.98548 3.06877 3.31275 3.71167 3.82512 3.88999 4.01276 4.10932 4.11975 4.19493 4.24123 4.30406 4.36872 4.39692 4.43698 4.45569 4.52892 4.53938 4.59600 4.62291 4.72715 4.74565 4.77392 4.88270 4.90330 5.00184 5.04444 5.05819 5.07015 5.10851 5.15368 5.19100 5.21506 5.24054 5.28118 5.32337 5.41783 5.48086 5.59406 5.72017 5.92184 6.03131 6.11320 6.12081 6.21675 6.45902 6.83158 6.95205 7.34445 7.53663 8.84110 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.002493 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.581212 B =11229.374667 C =11968.682144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.550 5.550 3 C 0.018 3.982 4 C 0.092 3.908 5 H 0.036 0.964 6 C -0.107 4.107 7 C -0.109 4.109 8 C -0.128 4.128 9 C 0.170 3.830 10 H 0.066 0.934 11 N -0.732 5.732 12 C 0.705 3.295 13 O -0.634 6.634 14 N -0.628 5.628 15 C 0.145 3.855 16 C 0.056 3.944 17 N -0.534 5.534 18 C 0.200 3.800 19 C -0.555 4.555 20 H 0.049 0.951 21 C 0.015 3.985 22 N -0.922 5.922 23 Si 0.952 3.048 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.278 1.278 27 C 0.050 3.950 28 C 0.126 3.874 29 C -0.109 4.109 30 H 0.024 0.976 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.407 0.593 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.014 0.986 46 H 0.075 0.925 47 H 0.016 0.984 48 H 0.006 0.994 49 H 0.266 0.734 50 H 0.017 0.983 51 H 0.082 0.918 52 H 0.103 0.897 53 H 0.090 0.910 54 H 0.084 0.916 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.182 14.513 -6.062 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.274 5.274 3 C -0.130 4.130 4 C -0.017 4.017 5 H 0.054 0.946 6 C -0.145 4.145 7 C -0.148 4.148 8 C -0.167 4.167 9 C 0.064 3.936 10 H 0.084 0.916 11 N -0.389 5.389 12 C 0.407 3.593 13 O -0.516 6.516 14 N -0.365 5.365 15 C 0.021 3.979 16 C -0.074 4.074 17 N -0.258 5.258 18 C 0.073 3.927 19 C -0.594 4.594 20 H 0.067 0.933 21 C -0.184 4.184 22 N -0.562 5.562 23 Si 0.778 3.222 24 H -0.199 1.199 25 H -0.200 1.200 26 H -0.204 1.204 27 C -0.079 4.079 28 C 0.003 3.997 29 C -0.148 4.148 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.245 0.755 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.032 0.968 46 H 0.093 0.907 47 H 0.034 0.966 48 H 0.024 0.976 49 H 0.075 0.925 50 H 0.035 0.965 51 H 0.101 0.899 52 H 0.121 0.879 53 H 0.108 0.892 54 H 0.103 0.897 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.050 14.602 -5.705 27.876 hybrid contribution -0.124 -1.675 0.363 1.719 sum -23.173 12.926 -5.342 27.067 Atomic orbital electron populations 1.22487 0.86576 1.02975 1.00780 1.62036 1.08659 1.14169 1.42568 1.22501 1.01466 0.88324 1.00745 1.21514 0.93796 0.94758 0.91595 0.94592 1.21604 1.00896 0.93352 0.98628 1.21427 0.93579 1.01077 0.98728 1.21928 0.96933 0.96393 1.01490 1.20720 0.77649 0.95792 0.99418 0.91574 1.45236 1.06985 1.77930 1.08711 1.15976 0.81420 0.77472 0.84430 1.90845 1.69812 1.60636 1.30281 1.47402 1.03846 1.74121 1.11098 1.21609 0.92326 0.97587 0.86349 1.22313 0.95143 0.95584 0.94338 1.62416 1.13432 1.46465 1.03501 1.19447 0.90087 0.87644 0.95511 1.21956 0.93870 0.95679 1.47851 0.93277 1.25728 0.95244 1.02610 0.94855 1.70043 1.05557 1.31885 1.48684 0.85600 0.78485 0.80074 0.78057 1.19880 1.20029 1.20401 1.22287 0.95069 0.96649 0.93917 1.21879 0.94343 0.98421 0.85045 1.21786 0.94904 1.00491 0.97576 0.95746 0.90559 0.90494 0.90687 0.90500 0.95868 0.90565 0.90879 0.92184 0.90681 0.91237 0.94416 0.75469 0.89868 0.90049 0.96808 0.90703 0.96631 0.97581 0.92534 0.96495 0.89948 0.87897 0.89151 0.89736 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.21 127.69 1.18 1.39 16 2 N -0.55 -7.35 4.89 -923.28 -4.51 -11.86 16 3 C 0.02 0.20 9.11 127.69 1.16 1.37 16 4 C 0.09 1.33 1.95 44.91 0.09 1.42 16 5 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 6 C -0.11 -1.46 4.97 30.59 0.15 -1.31 16 7 C -0.11 -1.81 5.92 30.60 0.18 -1.63 16 8 C -0.13 -2.75 5.49 30.60 0.17 -2.58 16 9 C 0.17 3.54 2.50 44.98 0.11 3.65 16 10 H 0.07 1.68 7.51 -2.39 -0.02 1.67 16 11 N -0.73 -16.91 4.99 -457.90 -2.29 -19.19 16 12 C 0.71 22.13 8.27 179.05 1.48 23.62 16 13 O -0.63 -24.60 15.45 -3.98 -0.06 -24.66 16 14 N -0.63 -19.09 3.00 -835.05 -2.51 -21.60 16 15 C 0.14 4.73 6.61 86.50 0.57 5.30 16 16 C 0.06 2.17 5.17 86.54 0.45 2.62 16 17 N -0.53 -21.90 4.83 -898.89 -4.34 -26.24 16 18 C 0.20 10.18 5.11 85.56 0.44 10.62 16 19 C -0.55 -30.36 7.76 25.60 0.20 -30.16 16 20 H 0.05 2.73 5.88 -2.91 -0.02 2.71 16 21 C 0.02 0.86 5.46 84.65 0.46 1.32 16 22 N -0.92 -53.95 13.29 21.44 0.28 -53.66 16 23 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.05 1.76 5.25 86.39 0.45 2.21 16 28 C 0.13 3.22 6.59 86.35 0.57 3.79 16 29 C -0.11 -1.64 4.31 30.58 0.13 -1.51 16 30 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.08 0.75 6.30 -2.39 -0.02 0.73 16 33 H 0.07 0.83 6.24 -2.38 -0.01 0.82 16 34 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 35 H 0.02 0.27 8.14 -2.39 -0.02 0.26 16 36 H 0.08 0.88 6.40 -2.39 -0.02 0.87 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.41 7.30 6.10 -92.71 -0.57 6.73 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.08 2.77 7.09 -2.39 -0.02 2.76 16 45 H 0.01 0.61 6.61 -2.39 -0.02 0.60 16 46 H 0.07 2.92 8.11 -2.39 -0.02 2.90 16 47 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16 48 H 0.01 0.33 8.14 -2.38 -0.02 0.32 16 49 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 50 H 0.02 0.68 7.11 -2.39 -0.02 0.66 16 51 H 0.08 2.80 8.06 -2.39 -0.02 2.78 16 52 H 0.10 1.92 5.63 -2.39 -0.01 1.91 16 53 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 54 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 55 H 0.08 1.09 6.35 -2.39 -0.02 1.07 16 Total: -1.00 -68.19 408.69 -3.31 -71.50 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.30 Total: 19.60 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 7.79 Total: 20.10 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -13.36 Total: -132.55 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.06 Total: -24.66 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.19 -3.31 -71.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868429705.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.694 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds