Wall clock time and date at job start Tue Mar 31 2020 22:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 111.00364 * 2 1 4 4 C 1.46905 * 110.99771 * 123.95384 * 2 1 3 5 5 H 1.09001 * 109.46782 * 54.99906 * 4 2 1 6 6 C 1.53001 * 109.46857 * 294.99644 * 4 2 1 7 7 C 1.52999 * 109.46737 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47025 * 60.00530 * 7 6 4 9 9 C 1.53004 * 109.47211 * 299.99587 * 8 7 6 10 10 H 1.08996 * 109.47407 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.46989 * 300.00403 * 9 8 7 12 12 C 1.34780 * 119.99483 * 274.99723 * 11 9 8 13 13 O 1.21585 * 120.00199 * 354.86621 * 12 11 9 14 14 N 1.34774 * 120.00122 * 174.87183 * 12 11 9 15 15 C 1.47086 * 120.87897 * 354.83764 * 14 12 11 16 16 C 1.53235 * 108.52077 * 128.79222 * 15 14 12 17 17 N 1.46899 * 109.36157 * 53.82056 * 16 15 14 18 18 C 1.46898 * 111.00127 * 172.76024 * 17 16 15 19 19 C 1.50705 * 109.47400 * 64.60227 * 18 17 16 20 20 H 1.07998 * 119.99972 * 2.78454 * 19 18 17 21 21 C 1.37875 * 119.99939 * 182.77956 * 19 18 17 22 22 N 1.31512 * 120.00309 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99807 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47384 * 90.00156 * 23 21 19 25 25 H 1.48507 * 109.47059 * 209.99997 * 23 21 19 26 26 H 1.48494 * 109.47133 * 329.99962 * 23 21 19 27 27 C 1.46901 * 111.26984 * 296.93181 * 17 16 15 28 28 C 1.47072 * 120.88685 * 174.81315 * 14 12 11 29 29 C 1.53001 * 109.47018 * 174.99647 * 4 2 1 30 30 H 1.08995 * 109.47200 * 296.05070 * 1 2 3 31 31 H 1.09000 * 109.46502 * 56.04582 * 1 2 3 32 32 H 1.08998 * 109.47363 * 176.04608 * 1 2 3 33 33 H 1.08995 * 109.47257 * 183.95439 * 3 2 1 34 34 H 1.09002 * 109.46642 * 303.95741 * 3 2 1 35 35 H 1.09002 * 109.47117 * 63.94905 * 3 2 1 36 36 H 1.08988 * 109.47507 * 300.00095 * 6 4 2 37 37 H 1.09004 * 109.46613 * 60.00677 * 6 4 2 38 38 H 1.09002 * 109.47332 * 179.97438 * 7 6 4 39 39 H 1.09000 * 109.47815 * 300.00316 * 7 6 4 40 40 H 1.08997 * 109.47374 * 179.97438 * 8 7 6 41 41 H 1.08996 * 109.47413 * 59.99517 * 8 7 6 42 42 H 0.96994 * 120.00141 * 94.99728 * 11 9 8 43 43 H 1.09002 * 109.62769 * 9.08395 * 15 14 12 44 44 H 1.08991 * 109.78969 * 248.59845 * 15 14 12 45 45 H 1.08998 * 109.49354 * 173.78779 * 16 15 14 46 46 H 1.09000 * 109.49789 * 293.84378 * 16 15 14 47 47 H 1.09003 * 109.47451 * 184.60538 * 18 17 16 48 48 H 1.09002 * 109.46898 * 304.60239 * 18 17 16 49 49 H 0.96997 * 120.00623 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.47224 * 303.10580 * 27 17 16 51 51 H 1.08998 * 109.51466 * 183.05192 * 27 17 16 52 52 H 1.09005 * 109.62825 * 350.92258 * 28 14 12 53 53 H 1.09000 * 109.63026 * 111.30020 * 28 14 12 54 54 H 1.09005 * 109.46718 * 60.00243 * 29 4 2 55 55 H 1.08995 * 109.47378 * 300.00488 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5753 -1.7717 1.1240 6 6 1.6091 -0.0694 2.4439 7 6 2.1568 -0.8676 3.6288 8 6 3.6811 -0.9507 3.5267 9 6 4.0676 -1.6473 2.2203 10 1 5.1535 -1.7061 2.1473 11 7 3.5024 -2.9987 2.2018 12 6 4.1657 -4.0145 2.7889 13 8 5.2747 -3.8296 3.2517 14 7 3.5997 -5.2354 2.8629 15 6 2.2171 -5.4552 2.4118 16 6 2.2032 -6.6454 1.4469 17 7 2.8373 -7.8028 2.0920 18 6 2.6918 -9.0101 1.2679 19 6 3.4410 -8.8279 -0.0269 20 1 4.0092 -7.9258 -0.1997 21 6 3.4012 -9.8128 -0.9909 22 7 2.7099 -10.9116 -0.7803 23 14 4.3305 -9.5872 -2.5955 24 1 5.7054 -10.1298 -2.4519 25 1 3.6238 -10.3110 -3.6828 26 1 4.4011 -8.1416 -2.9276 27 6 4.2505 -7.5374 2.3927 28 6 4.3483 -6.3835 3.3963 29 6 3.5198 -0.8487 1.0352 30 1 -0.3633 0.4513 0.9232 31 1 -0.3632 0.5740 -0.8525 32 1 -0.3634 -1.0252 -0.0709 33 1 3.0828 1.3432 -0.0709 34 1 1.5899 1.9163 -0.8524 35 1 1.7045 1.8724 0.9233 36 1 2.0291 0.9362 2.4575 37 1 0.5231 -0.0107 2.5169 38 1 1.8820 -0.3711 4.5595 39 1 1.7364 -1.8731 3.6151 40 1 4.0714 -1.5189 4.3710 41 1 4.1016 0.0548 3.5404 42 1 2.6509 -3.1624 1.7671 43 1 1.8531 -4.5644 1.8998 44 1 1.5792 -5.6711 3.2688 45 1 1.1735 -6.8921 1.1884 46 1 2.7533 -6.3867 0.5421 47 1 3.0974 -9.8677 1.8048 48 1 1.6362 -9.1803 1.0561 49 1 2.6816 -11.6044 -1.4586 50 1 4.7725 -7.2663 1.4750 51 1 4.7060 -8.4307 2.8199 52 1 5.3934 -6.1066 3.5353 53 1 3.9202 -6.6880 4.3514 54 1 3.9399 0.1571 1.0488 55 1 3.7950 -1.3448 0.1045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868429707.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:27 Heat of formation + Delta-G solvation = -33.017119 kcal Electronic energy + Delta-G solvation = -31601.592950 eV Core-core repulsion = 27672.636286 eV Total energy + Delta-G solvation = -3928.956664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.76639 -40.43497 -39.04990 -37.08246 -35.99690 -34.52052 -34.00119 -32.09205 -31.22321 -30.32767 -29.49597 -28.42671 -27.08845 -25.27121 -24.60218 -24.26464 -23.49496 -22.49574 -21.74308 -20.75925 -19.78327 -19.28592 -18.33962 -17.25651 -17.06725 -16.87484 -16.65357 -16.14378 -15.99902 -15.69307 -15.55900 -15.50517 -15.34587 -15.28257 -14.95522 -14.86946 -14.36905 -13.94667 -13.76578 -13.58426 -13.52487 -13.26760 -13.04816 -12.97964 -12.91396 -12.77896 -12.58690 -12.52659 -12.48084 -12.43525 -12.21913 -11.99487 -11.94376 -11.82633 -11.63861 -11.58031 -11.47093 -11.15268 -11.10717 -10.62386 -10.17511 -9.56373 -9.13794 -9.03025 -8.17968 -6.37008 1.33891 1.35472 1.44942 1.65525 2.14544 2.34862 2.87434 3.02575 3.07307 3.30356 3.70239 3.76272 3.94762 4.00357 4.11752 4.11926 4.16259 4.19593 4.30244 4.36701 4.41776 4.48641 4.50963 4.52255 4.61322 4.61584 4.67471 4.71596 4.77330 4.79898 4.80813 4.89681 5.03416 5.05507 5.07093 5.08029 5.12396 5.16344 5.18450 5.21540 5.28834 5.31926 5.34701 5.37930 5.48628 5.65416 5.72060 5.92496 6.03284 6.14445 6.15700 6.21492 6.45688 6.83076 6.96128 7.34608 7.56026 8.84275 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002978 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.381648 B = 9400.307623 C =10505.147476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.555 5.555 3 C 0.015 3.985 4 C 0.086 3.914 5 H 0.074 0.926 6 C -0.143 4.143 7 C -0.107 4.107 8 C -0.125 4.125 9 C 0.165 3.835 10 H 0.069 0.931 11 N -0.728 5.728 12 C 0.705 3.295 13 O -0.633 6.633 14 N -0.628 5.628 15 C 0.128 3.872 16 C 0.050 3.950 17 N -0.535 5.535 18 C 0.202 3.798 19 C -0.557 4.557 20 H 0.050 0.950 21 C 0.017 3.983 22 N -0.922 5.922 23 Si 0.951 3.049 24 H -0.276 1.276 25 H -0.278 1.278 26 H -0.272 1.272 27 C 0.055 3.945 28 C 0.145 3.855 29 C -0.110 4.110 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.402 0.598 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.017 0.983 47 H 0.007 0.993 48 H 0.014 0.986 49 H 0.266 0.734 50 H 0.014 0.986 51 H 0.075 0.925 52 H 0.082 0.918 53 H 0.082 0.918 54 H 0.094 0.906 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 26.260 6.156 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.278 5.278 3 C -0.132 4.132 4 C -0.022 4.022 5 H 0.092 0.908 6 C -0.182 4.182 7 C -0.145 4.145 8 C -0.164 4.164 9 C 0.060 3.940 10 H 0.087 0.913 11 N -0.386 5.386 12 C 0.407 3.593 13 O -0.515 6.515 14 N -0.365 5.365 15 C 0.005 3.995 16 C -0.079 4.079 17 N -0.258 5.258 18 C 0.075 3.925 19 C -0.596 4.596 20 H 0.068 0.932 21 C -0.183 4.183 22 N -0.562 5.562 23 Si 0.777 3.223 24 H -0.202 1.202 25 H -0.203 1.203 26 H -0.197 1.197 27 C -0.074 4.074 28 C 0.022 3.978 29 C -0.148 4.148 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.241 0.759 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.035 0.965 47 H 0.025 0.975 48 H 0.032 0.968 49 H 0.075 0.925 50 H 0.032 0.968 51 H 0.093 0.907 52 H 0.100 0.900 53 H 0.101 0.899 54 H 0.113 0.887 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.542 25.941 6.406 27.103 hybrid contribution 0.326 -0.314 -1.315 1.391 sum -4.216 25.627 5.091 26.466 Atomic orbital electron populations 1.22439 0.86745 1.02514 1.01110 1.62222 1.08631 1.14772 1.42132 1.22516 1.01199 0.88445 1.01090 1.21666 0.94635 0.97466 0.88480 0.90834 1.22151 1.01160 1.00137 0.94765 1.21361 0.94525 1.00270 0.98353 1.21888 0.97012 1.00873 0.96589 1.20837 0.97892 0.79647 0.95643 0.91320 1.45340 1.25755 1.07460 1.60086 1.15986 0.83552 0.80768 0.78976 1.90843 1.21183 1.83475 1.55999 1.47384 1.15151 1.07448 1.66482 1.21820 0.81926 0.97370 0.98362 1.22291 0.99767 0.90932 0.94956 1.62407 1.13939 1.04219 1.45259 1.19423 0.95599 0.87796 0.89684 1.21945 1.31276 1.03335 1.03037 0.93234 1.25719 0.96043 0.94867 1.01705 1.70036 1.41933 1.08169 1.36051 0.85661 0.78826 0.78207 0.79624 1.20170 1.20287 1.19693 1.22234 0.90055 0.97936 0.97178 1.21501 0.96973 0.83239 0.96127 1.21822 0.95042 1.01094 0.96861 0.94550 0.90958 0.91544 0.90942 0.91173 0.94413 0.90780 0.91257 0.91234 0.92568 0.93544 0.89644 0.75882 0.88451 0.89210 0.89995 0.96508 0.97536 0.96799 0.92514 0.96786 0.90674 0.89985 0.89941 0.88738 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.31 127.69 1.19 1.43 16 2 N -0.55 -7.88 5.01 -923.26 -4.62 -12.50 16 3 C 0.02 0.17 8.82 127.69 1.13 1.30 16 4 C 0.09 1.20 2.06 44.92 0.09 1.29 16 5 H 0.07 1.12 6.49 -2.39 -0.02 1.10 16 6 C -0.14 -1.66 4.51 30.59 0.14 -1.53 16 7 C -0.11 -1.48 5.77 30.59 0.18 -1.30 16 8 C -0.12 -2.14 5.60 30.60 0.17 -1.97 16 9 C 0.17 3.29 2.83 45.01 0.13 3.42 16 10 H 0.07 1.70 7.51 -2.39 -0.02 1.69 16 11 N -0.73 -16.82 4.13 -457.74 -1.89 -18.71 16 12 C 0.71 22.02 8.27 179.05 1.48 23.50 16 13 O -0.63 -24.29 15.45 -3.98 -0.06 -24.35 16 14 N -0.63 -19.15 3.01 -835.96 -2.52 -21.66 16 15 C 0.13 3.34 6.61 86.35 0.57 3.92 16 16 C 0.05 1.76 5.24 86.38 0.45 2.22 16 17 N -0.53 -22.00 4.83 -899.83 -4.35 -26.35 16 18 C 0.20 10.31 5.11 85.56 0.44 10.75 16 19 C -0.56 -30.62 7.77 25.60 0.20 -30.42 16 20 H 0.05 2.75 5.87 -2.91 -0.02 2.73 16 21 C 0.02 0.93 5.46 84.65 0.46 1.39 16 22 N -0.92 -54.17 13.29 21.45 0.28 -53.89 16 23 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.06 2.17 5.16 86.38 0.45 2.61 16 28 C 0.15 4.74 6.58 86.35 0.57 5.31 16 29 C -0.11 -1.71 4.69 30.61 0.14 -1.57 16 30 H 0.04 0.38 6.44 -2.39 -0.02 0.36 16 31 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.78 6.33 -2.39 -0.02 0.77 16 34 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 35 H 0.04 0.36 6.28 -2.39 -0.01 0.35 16 36 H 0.07 0.79 6.38 -2.39 -0.02 0.77 16 37 H 0.07 0.77 6.52 -2.39 -0.02 0.75 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.88 7.60 -2.39 -0.02 0.86 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.40 7.89 4.39 -92.71 -0.41 7.49 16 43 H 0.10 1.93 5.63 -2.39 -0.01 1.92 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.08 2.81 8.06 -2.39 -0.02 2.79 16 46 H 0.02 0.68 7.05 -2.39 -0.02 0.66 16 47 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.01 0.76 8.07 -2.39 -0.02 0.74 16 49 H 0.27 14.73 8.31 -92.71 -0.77 13.95 16 50 H 0.01 0.62 6.66 -2.39 -0.02 0.61 16 51 H 0.07 2.94 8.11 -2.39 -0.02 2.92 16 52 H 0.08 2.79 7.10 -2.38 -0.02 2.77 16 53 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 54 H 0.09 1.20 6.42 -2.38 -0.02 1.18 16 55 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -67.64 400.94 -2.88 -70.51 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.47 Total: 20.46 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 7.78 Total: 20.34 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -13.09 Total: -133.11 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -67.64 -2.88 -70.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868429707.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.495 kcal (2) G-P(sol) polarization free energy of solvation -67.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds