Wall clock time and date at job start Tue Mar 31 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47606 * 2 1 4 4 C 1.50701 * 109.46804 * 240.00049 * 2 1 3 5 5 O 1.21285 * 120.00107 * 251.90818 * 4 2 1 6 6 N 1.34774 * 120.00006 * 71.91379 * 4 2 1 7 7 C 1.46969 * 120.59323 * 184.97302 * 6 4 2 8 8 C 1.53371 * 108.63283 * 235.24510 * 7 6 4 9 9 H 1.09003 * 109.60741 * 70.32085 * 8 7 6 10 10 C 1.53003 * 109.74979 * 190.74892 * 8 7 6 11 11 N 1.46961 * 108.63504 * 310.57790 * 8 7 6 12 12 C 1.36940 * 120.59299 * 235.20026 * 11 8 7 13 13 H 1.08004 * 119.99465 * 123.43050 * 12 11 8 14 14 C 1.38816 * 120.00128 * 303.43757 * 12 11 8 15 15 N 1.31609 * 119.99720 * 336.12143 * 14 12 11 16 16 Si 1.86795 * 119.99894 * 156.12276 * 14 12 11 17 17 H 1.48502 * 109.47123 * 269.99511 * 16 14 12 18 18 H 1.48500 * 109.47495 * 29.99397 * 16 14 12 19 19 H 1.48497 * 109.47248 * 150.00033 * 16 14 12 20 20 C 1.46961 * 118.81444 * 55.47756 * 11 8 7 21 21 H 1.08999 * 109.60813 * 64.26635 * 20 11 8 22 22 C 1.53004 * 109.61028 * 184.77550 * 20 11 8 23 23 C 1.46961 * 120.59209 * 4.99259 * 6 4 2 24 24 N 1.46902 * 109.47216 * 120.00294 * 2 1 3 25 25 C 1.46965 * 110.99994 * 49.43859 * 24 2 1 26 26 C 1.53049 * 109.36482 * 176.81067 * 25 24 2 27 27 N 1.46955 * 109.35917 * 58.40647 * 26 25 24 28 28 C 1.46902 * 110.99593 * 176.81173 * 27 26 25 29 29 C 1.46959 * 110.88320 * 300.67300 * 27 26 25 30 30 C 1.46955 * 110.99867 * 285.64721 * 24 2 1 31 31 H 1.08996 * 109.46907 * 57.97196 * 1 2 3 32 32 H 1.08997 * 109.47248 * 177.97448 * 1 2 3 33 33 H 1.08999 * 109.46765 * 297.97867 * 1 2 3 34 34 H 1.08996 * 109.60944 * 115.49923 * 7 6 4 35 35 H 1.09000 * 109.74815 * 355.07252 * 7 6 4 36 36 H 1.08997 * 109.46746 * 187.25219 * 10 8 7 37 37 H 1.09003 * 109.46751 * 307.24577 * 10 8 7 38 38 H 1.08997 * 109.47238 * 67.24500 * 10 8 7 39 39 H 0.97007 * 119.99978 * 175.06377 * 15 14 12 40 40 H 1.09000 * 109.46833 * 63.46765 * 22 20 11 41 41 H 1.09002 * 109.46990 * 183.46143 * 22 20 11 42 42 H 1.09003 * 109.47173 * 303.46531 * 22 20 11 43 43 H 1.09003 * 109.60978 * 244.49530 * 23 6 4 44 44 H 1.08995 * 109.61361 * 4.83793 * 23 6 4 45 45 H 1.09001 * 109.48777 * 296.78585 * 25 24 2 46 46 H 1.09006 * 109.48503 * 56.84627 * 25 24 2 47 47 H 1.08998 * 109.49152 * 298.43444 * 26 25 24 48 48 H 1.09002 * 109.50576 * 178.37677 * 26 25 24 49 49 H 1.09009 * 109.47134 * 183.79961 * 28 27 26 50 50 H 1.08999 * 109.47023 * 303.79470 * 28 27 26 51 51 H 1.08995 * 109.47619 * 63.80002 * 28 27 26 52 52 H 1.09004 * 109.49021 * 299.36261 * 29 27 26 53 53 H 1.08999 * 109.50701 * 179.29939 * 29 27 26 54 54 H 1.09001 * 109.48608 * 303.14969 * 30 24 2 55 55 H 1.08998 * 109.49547 * 63.21554 * 30 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5419 -1.8066 -1.1323 6 7 1.9152 -0.1276 -2.4401 7 6 2.3002 -0.8517 -3.6597 8 6 3.3278 -0.0095 -4.4258 9 1 4.2715 0.0013 -3.8804 10 6 3.5468 -0.6027 -5.8191 11 7 2.8134 1.3616 -4.5487 12 6 2.6953 1.9541 -5.7777 13 1 1.7390 2.3361 -6.1033 14 6 3.8047 2.0637 -6.6049 15 7 5.0149 2.0518 -6.0877 16 14 3.5799 2.2280 -8.4519 17 1 3.5618 0.8780 -9.0704 18 1 2.2964 2.9192 -8.7349 19 1 4.7027 3.0171 -9.0190 20 6 2.4337 2.0877 -3.3288 21 1 3.3151 2.2444 -2.7071 22 6 1.8195 3.4377 -3.7048 23 6 1.4008 1.2435 -2.5630 24 7 2.0197 -0.6926 1.1994 25 6 1.3541 -1.9922 1.3658 26 6 1.9472 -2.7147 2.5776 27 7 1.7740 -1.8805 3.7750 28 6 2.2636 -2.5731 4.9744 29 6 2.4395 -0.5809 3.6088 30 6 1.8464 0.1416 2.3968 31 1 -0.3633 0.5450 -0.8712 32 1 -0.3633 -1.0270 -0.0363 33 1 -0.3633 0.4821 0.9076 34 1 1.4206 -1.0118 -4.2831 35 1 2.7401 -1.8130 -3.3939 36 1 4.3678 -0.0811 -6.3110 37 1 3.7910 -1.6612 -5.7290 38 1 2.6378 -0.4884 -6.4096 39 1 5.7911 2.0561 -6.6695 40 1 0.9006 3.2745 -4.2678 41 1 1.5953 3.9999 -2.7983 42 1 2.5252 4.0002 -4.3161 43 1 0.4571 1.2326 -3.1084 44 1 1.2448 1.6661 -1.5705 45 1 0.2866 -1.8368 1.5215 46 1 1.5073 -2.5963 0.4714 47 1 3.0092 -2.8944 2.4101 48 1 1.4354 -3.6665 2.7204 49 1 2.0622 -1.9621 5.8544 50 1 1.7547 -3.5318 5.0735 51 1 3.3372 -2.7390 4.8853 52 1 3.5071 -0.7363 3.4529 53 1 2.2866 0.0234 4.5030 54 1 2.3585 1.0932 2.2543 55 1 0.7845 0.3213 2.5643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880459113.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:02 Heat of formation + Delta-G solvation = -0.243652 kcal Electronic energy + Delta-G solvation = -32203.942311 eV Core-core repulsion = 28276.406811 eV Total energy + Delta-G solvation = -3927.535500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60861 -40.09810 -38.79459 -36.74865 -35.88446 -34.39912 -33.41801 -32.04037 -31.79309 -29.50324 -28.43280 -27.69780 -27.44581 -26.00582 -24.99740 -24.61414 -23.53373 -22.04461 -21.42030 -20.56364 -19.89509 -18.42548 -17.76594 -17.47978 -16.80379 -16.62246 -16.32444 -16.23811 -16.04580 -15.88793 -15.59928 -15.58921 -15.37636 -14.95183 -14.71385 -14.52780 -14.14663 -13.75362 -13.58384 -13.41471 -13.37333 -13.26695 -13.13376 -12.99895 -12.78579 -12.67589 -12.62743 -12.55848 -12.45041 -12.29236 -12.20770 -12.15622 -11.99830 -11.86569 -11.75905 -11.65032 -11.62320 -11.44273 -10.54073 -10.21862 -9.61956 -9.41882 -9.17806 -8.38981 -7.63488 -5.63977 1.44878 1.50254 1.55310 1.67037 1.99938 2.50618 2.90450 2.99521 3.21584 3.51067 3.52944 3.84240 4.00249 4.07836 4.11716 4.13920 4.22419 4.30301 4.32373 4.36761 4.39509 4.50076 4.51846 4.58768 4.62008 4.63596 4.67366 4.71822 4.77877 4.79346 4.83394 4.86662 4.87213 4.93629 4.96288 4.99178 5.01302 5.01429 5.07945 5.18679 5.21490 5.41762 5.52055 5.56251 5.69277 5.73741 5.80488 5.89697 5.95430 6.13773 6.17523 6.58423 6.61143 7.24275 7.27043 7.77718 8.54508 9.11693 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025583 B = 0.002747 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.214235 B =10191.751535 C =10570.570423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.116 0.884 4 C 0.513 3.487 5 O -0.575 6.575 6 N -0.602 5.602 7 C 0.111 3.889 8 C 0.182 3.818 9 H -0.012 1.012 10 C -0.128 4.128 11 N -0.589 5.589 12 C -0.263 4.263 13 H 0.052 0.948 14 C 0.005 3.995 15 N -0.904 5.904 16 Si 0.928 3.072 17 H -0.279 1.279 18 H -0.264 1.264 19 H -0.300 1.300 20 C 0.146 3.854 21 H 0.002 0.998 22 C -0.116 4.116 23 C 0.105 3.895 24 N -0.539 5.539 25 C 0.058 3.942 26 C 0.063 3.937 27 N -0.550 5.550 28 C 0.025 3.975 29 C 0.058 3.942 30 C 0.057 3.943 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.249 0.751 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.021 0.979 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.075 0.925 51 H 0.020 0.980 52 H 0.026 0.974 53 H 0.101 0.899 54 H 0.090 0.910 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 -3.405 18.486 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.039 4.039 3 H 0.134 0.866 4 C 0.302 3.698 5 O -0.454 6.454 6 N -0.334 5.334 7 C -0.013 4.013 8 C 0.075 3.925 9 H 0.006 0.994 10 C -0.186 4.186 11 N -0.314 5.314 12 C -0.393 4.393 13 H 0.069 0.931 14 C -0.196 4.196 15 N -0.544 5.544 16 Si 0.755 3.245 17 H -0.206 1.206 18 H -0.188 1.188 19 H -0.227 1.227 20 C 0.040 3.960 21 H 0.019 0.981 22 C -0.174 4.174 23 C -0.018 4.018 24 N -0.264 5.264 25 C -0.070 4.070 26 C -0.065 4.065 27 N -0.275 5.275 28 C -0.123 4.123 29 C -0.070 4.070 30 C -0.071 4.071 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.125 0.875 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.039 0.961 48 H 0.106 0.894 49 H 0.101 0.899 50 H 0.093 0.907 51 H 0.039 0.961 52 H 0.045 0.955 53 H 0.119 0.881 54 H 0.108 0.892 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.698 -3.881 18.492 21.713 hybrid contribution 1.028 -0.086 -1.486 1.809 sum -9.670 -3.967 17.005 19.961 Atomic orbital electron populations 1.22335 0.92838 1.03151 1.04650 1.21565 0.95902 0.98388 0.88011 0.86641 1.21079 0.77990 0.85902 0.84805 1.90578 1.45738 1.23021 1.86102 1.48085 1.63526 1.16032 1.05747 1.22035 0.98766 0.95166 0.85369 1.20500 0.92027 0.85488 0.94486 0.99420 1.21733 1.02244 0.97942 0.96720 1.44199 1.75996 1.09375 1.01822 1.18709 0.91790 1.35896 0.92929 0.93106 1.26109 0.95331 0.96557 1.01595 1.70339 0.97991 1.50789 1.35300 0.85927 0.77473 0.77869 0.83187 1.20564 1.18838 1.22685 1.21158 0.93792 0.92583 0.88501 0.98070 1.21539 1.00122 0.94961 1.00779 1.22552 0.97212 0.80271 1.01811 1.61952 1.58129 1.04177 1.02143 1.22233 0.96229 0.90476 0.98063 1.22089 0.98626 0.96474 0.89323 1.62257 1.57478 1.04331 1.03385 1.22401 0.97696 0.99806 0.92387 1.22205 0.95680 0.90742 0.98403 1.22280 1.00584 0.96112 0.88111 0.90165 0.92498 0.89304 0.91140 0.91178 0.92948 0.93300 0.92600 0.94159 0.92470 0.90604 0.94553 0.90384 0.87527 0.93237 0.90941 0.96065 0.89389 0.89902 0.90671 0.96109 0.95547 0.88071 0.89164 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.02 71.98 0.58 -2.61 16 2 C 0.07 1.79 1.85 44.17 0.08 1.88 16 3 H 0.12 2.57 6.63 -2.39 -0.02 2.55 16 4 C 0.51 17.37 6.84 87.66 0.60 17.97 16 5 O -0.57 -23.54 13.65 -3.05 -0.04 -23.58 16 6 N -0.60 -20.81 2.95 -817.15 -2.41 -23.22 16 7 C 0.11 4.32 5.91 86.41 0.51 4.83 16 8 C 0.18 8.35 3.35 45.03 0.15 8.50 16 9 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 10 C -0.13 -5.75 7.91 71.98 0.57 -5.18 16 11 N -0.59 -27.47 2.72 -649.87 -1.77 -29.24 16 12 C -0.26 -13.19 6.35 84.03 0.53 -12.66 16 13 H 0.05 2.55 7.44 -2.91 -0.02 2.53 16 14 C 0.00 0.24 3.14 84.86 0.27 0.50 16 15 N -0.90 -51.48 12.38 21.65 0.27 -51.21 16 16 Si 0.93 41.91 29.62 68.60 2.03 43.95 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 20 C 0.15 5.68 3.67 45.18 0.17 5.85 16 21 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 22 C -0.12 -3.98 8.22 71.98 0.59 -3.39 16 23 C 0.11 3.14 4.77 86.57 0.41 3.55 16 24 N -0.54 -13.59 4.41 -874.83 -3.86 -17.45 16 25 C 0.06 1.45 4.48 86.31 0.39 1.83 16 26 C 0.06 1.42 5.62 86.31 0.49 1.91 16 27 N -0.55 -10.48 4.97 -921.92 -4.58 -15.06 16 28 C 0.02 0.37 9.60 127.69 1.23 1.59 16 29 C 0.06 1.05 5.62 86.31 0.49 1.53 16 30 C 0.06 1.06 5.38 86.31 0.46 1.52 16 31 H 0.08 1.38 6.55 -2.39 -0.02 1.36 16 32 H 0.06 1.18 6.51 -2.39 -0.02 1.17 16 33 H 0.09 1.30 6.86 -2.39 -0.02 1.28 16 34 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 35 H 0.07 2.83 7.00 -2.39 -0.02 2.81 16 36 H 0.05 2.65 5.35 -2.39 -0.01 2.64 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 2.45 7.56 -2.39 -0.02 2.43 16 39 H 0.25 13.87 8.32 -92.70 -0.77 13.10 16 40 H 0.06 1.88 7.73 -2.39 -0.02 1.86 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.49 7.55 -2.39 -0.02 1.47 16 43 H 0.08 2.19 8.12 -2.39 -0.02 2.17 16 44 H 0.11 2.40 5.05 -2.39 -0.01 2.39 16 45 H 0.05 1.13 6.45 -2.39 -0.02 1.11 16 46 H 0.07 2.25 5.85 -2.38 -0.01 2.24 16 47 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.09 1.72 8.13 -2.39 -0.02 1.70 16 49 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 51 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 52 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 53 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 54 H 0.09 1.49 8.03 -2.39 -0.02 1.47 16 55 H 0.06 0.93 6.90 -2.39 -0.02 0.92 16 Total: -1.00 -66.18 398.32 -2.00 -68.17 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.85 Total: 20.02 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: 7.51 Total: 27.62 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -12.35 Total: -136.17 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.04 Total: -23.58 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.95 kcal Total: -66.18 -2.00 -68.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459113.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.929 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds