Wall clock time and date at job start Tue Mar 31 2020 22:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47111 * 2 1 4 4 C 1.50695 * 109.46937 * 239.99591 * 2 1 3 5 5 O 1.21275 * 120.00567 * 262.31948 * 4 2 1 6 6 N 1.34780 * 119.99665 * 82.32814 * 4 2 1 7 7 C 1.46965 * 120.59235 * 354.41176 * 6 4 2 8 8 C 1.53819 * 108.39405 * 124.76462 * 7 6 4 9 9 H 1.08998 * 109.74179 * 289.84823 * 8 7 6 10 10 C 1.53006 * 109.53100 * 169.30418 * 8 7 6 11 11 N 1.46966 * 108.57904 * 49.63937 * 8 7 6 12 12 C 1.36934 * 120.59265 * 124.67024 * 11 8 7 13 13 H 1.07993 * 120.00244 * 323.56539 * 12 11 8 14 14 C 1.38814 * 119.99850 * 143.56427 * 12 11 8 15 15 N 1.31623 * 119.99911 * 357.80362 * 14 12 11 16 16 Si 1.86797 * 120.00238 * 177.80951 * 14 12 11 17 17 H 1.48508 * 109.46912 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47525 * 119.99540 * 16 14 12 19 19 H 1.48498 * 109.47217 * 240.00147 * 16 14 12 20 20 C 1.46963 * 118.80762 * 304.64304 * 11 8 7 21 21 H 1.09003 * 109.60810 * 174.97386 * 20 11 8 22 22 C 1.52998 * 109.61316 * 295.48135 * 20 11 8 23 23 C 1.46966 * 120.59442 * 174.70143 * 6 4 2 24 24 N 1.46906 * 109.46607 * 120.00401 * 2 1 3 25 25 C 1.46954 * 111.00251 * 49.91868 * 24 2 1 26 26 C 1.53051 * 109.36165 * 176.81322 * 25 24 2 27 27 N 1.46956 * 109.36489 * 58.39974 * 26 25 24 28 28 C 1.46908 * 110.99672 * 176.81176 * 27 26 25 29 29 C 1.46954 * 110.88283 * 300.67772 * 27 26 25 30 30 C 1.46956 * 110.99617 * 286.11696 * 24 2 1 31 31 H 1.09002 * 109.47041 * 54.52649 * 1 2 3 32 32 H 1.08997 * 109.47476 * 294.53084 * 1 2 3 33 33 H 1.08995 * 109.47431 * 174.52946 * 1 2 3 34 34 H 1.09003 * 109.60920 * 244.54435 * 7 6 4 35 35 H 1.08993 * 109.61136 * 5.05715 * 7 6 4 36 36 H 1.08998 * 109.46815 * 305.64564 * 10 8 7 37 37 H 1.09000 * 109.46997 * 65.64581 * 10 8 7 38 38 H 1.08997 * 109.46868 * 185.64744 * 10 8 7 39 39 H 0.97000 * 120.00055 * 184.99676 * 15 14 12 40 40 H 1.09003 * 109.47117 * 179.14526 * 22 20 11 41 41 H 1.09000 * 109.47825 * 299.15006 * 22 20 11 42 42 H 1.09007 * 109.46562 * 59.15234 * 22 20 11 43 43 H 1.09000 * 109.61039 * 354.93922 * 23 6 4 44 44 H 1.08994 * 109.61164 * 115.28239 * 23 6 4 45 45 H 1.08996 * 109.48542 * 296.77776 * 25 24 2 46 46 H 1.08999 * 109.48991 * 56.84427 * 25 24 2 47 47 H 1.09004 * 109.48619 * 298.43221 * 26 25 24 48 48 H 1.08996 * 109.50950 * 178.37880 * 26 25 24 49 49 H 1.09007 * 109.46780 * 183.79897 * 28 27 26 50 50 H 1.08997 * 109.46847 * 303.79916 * 28 27 26 51 51 H 1.09005 * 109.46965 * 63.80146 * 28 27 26 52 52 H 1.09004 * 109.48823 * 299.35458 * 29 27 26 53 53 H 1.09002 * 109.50934 * 179.29939 * 29 27 26 54 54 H 1.09001 * 109.49122 * 303.16056 * 30 24 2 55 55 H 1.08999 * 109.49046 * 63.20193 * 30 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.3668 -1.8743 -1.1646 6 7 2.1100 -0.0523 -2.4040 7 6 1.5953 1.3186 -2.5282 8 6 2.7273 2.2161 -3.0565 9 1 3.4878 2.3416 -2.2857 10 6 2.1576 3.5811 -3.4478 11 7 3.3225 1.5733 -4.2365 12 6 3.4013 2.2419 -5.4289 13 1 2.6053 2.9074 -5.7285 14 6 4.5044 2.0644 -6.2526 15 7 5.4945 1.2870 -5.8681 16 14 4.5839 2.9287 -7.9067 17 1 3.3548 3.7392 -8.1012 18 1 5.7731 3.8173 -7.9443 19 1 4.6871 1.9175 -8.9892 20 6 3.8320 0.2003 -4.1137 21 1 4.1558 -0.1585 -5.0907 22 6 5.0098 0.1750 -3.1375 23 6 2.7051 -0.6951 -3.5841 24 7 2.0196 -0.6926 1.1995 25 6 1.3623 -1.9972 1.3595 26 6 1.9554 -2.7189 2.5719 27 7 1.7718 -1.8892 3.7708 28 6 2.2615 -2.5818 4.9703 29 6 2.4291 -0.5846 3.6108 30 6 1.8360 0.1371 2.3984 31 1 -0.3633 0.5964 -0.8369 32 1 -0.3634 0.4266 0.9349 33 1 -0.3634 -1.0229 -0.0980 34 1 0.7577 1.3331 -3.2256 35 1 1.2680 1.6764 -1.5521 36 1 1.3363 3.4439 -4.1511 37 1 1.7916 4.0910 -2.5567 38 1 2.9392 4.1807 -3.9143 39 1 6.2966 1.2196 -6.4094 40 1 5.3762 -0.8466 -3.0365 41 1 5.8093 0.8120 -3.5160 42 1 4.6830 0.5417 -2.1643 43 1 3.1110 -1.6676 -3.3053 44 1 1.9440 -0.8234 -4.3537 45 1 0.2931 -1.8494 1.5115 46 1 1.5231 -2.5977 0.4642 47 1 3.0193 -2.8909 2.4080 48 1 1.4496 -3.6745 2.7100 49 1 2.0524 -1.9746 5.8511 50 1 1.7587 -3.5442 5.0647 51 1 3.3366 -2.7402 4.8849 52 1 3.4984 -0.7324 3.4588 53 1 2.2687 0.0161 4.5060 54 1 2.3421 1.0926 2.2605 55 1 0.7722 0.3094 2.5620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880459115.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:08 Heat of formation + Delta-G solvation = 1.659299 kcal Electronic energy + Delta-G solvation = -32450.380752 eV Core-core repulsion = 28522.927770 eV Total energy + Delta-G solvation = -3927.452982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62468 -40.11786 -38.77399 -36.72662 -35.67283 -34.26722 -33.30108 -31.99011 -31.75199 -29.70523 -28.41133 -27.81845 -27.27297 -25.72453 -25.10826 -24.61228 -23.72458 -22.42306 -21.08949 -20.41984 -19.91697 -18.42748 -17.65919 -17.44804 -16.93693 -16.59718 -16.29321 -16.04407 -15.85265 -15.73332 -15.66613 -15.45293 -15.27926 -14.93462 -14.71897 -14.65558 -14.08475 -13.70795 -13.50672 -13.46172 -13.44012 -13.29835 -12.97693 -12.85705 -12.82829 -12.77477 -12.67845 -12.52713 -12.35311 -12.27466 -12.24344 -12.03082 -11.97501 -11.86672 -11.71334 -11.68422 -11.51669 -11.33571 -10.48270 -10.38199 -9.65553 -9.40942 -9.16270 -8.35422 -7.79326 -5.33307 1.48228 1.52055 1.59564 1.68230 2.04955 2.54822 2.93484 3.00975 3.38158 3.52463 3.56939 3.85056 4.01009 4.09235 4.12798 4.19185 4.22467 4.28430 4.34552 4.38516 4.39747 4.50381 4.59722 4.62546 4.65737 4.66678 4.68252 4.72476 4.75010 4.79901 4.84363 4.88002 4.94024 4.95467 4.99108 4.99764 5.01351 5.10124 5.15350 5.19274 5.22512 5.39817 5.47909 5.63364 5.76031 5.80252 5.86706 5.92103 5.96278 6.14704 6.18704 6.54697 6.63006 7.25317 7.30413 7.91617 8.47637 9.26260 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.002859 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.420297 B = 9790.892297 C =10113.170977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.116 0.884 4 C 0.516 3.484 5 O -0.576 6.576 6 N -0.597 5.597 7 C 0.100 3.900 8 C 0.147 3.853 9 H 0.018 0.982 10 C -0.127 4.127 11 N -0.596 5.596 12 C -0.246 4.246 13 H 0.073 0.927 14 C -0.042 4.042 15 N -0.926 5.926 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.298 1.298 19 H -0.299 1.299 20 C 0.185 3.815 21 H 0.072 0.928 22 C -0.116 4.116 23 C 0.107 3.893 24 N -0.539 5.539 25 C 0.053 3.947 26 C 0.063 3.937 27 N -0.550 5.550 28 C 0.025 3.975 29 C 0.058 3.942 30 C 0.056 3.944 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.246 0.754 40 H 0.026 0.974 41 H 0.044 0.956 42 H 0.023 0.977 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.081 0.919 47 H 0.021 0.979 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.074 0.926 51 H 0.020 0.980 52 H 0.026 0.974 53 H 0.101 0.899 54 H 0.091 0.909 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 -0.777 18.816 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.039 4.039 3 H 0.133 0.867 4 C 0.305 3.695 5 O -0.455 6.455 6 N -0.328 5.328 7 C -0.023 4.023 8 C 0.041 3.959 9 H 0.036 0.964 10 C -0.185 4.185 11 N -0.320 5.320 12 C -0.376 4.376 13 H 0.091 0.909 14 C -0.238 4.238 15 N -0.572 5.572 16 Si 0.786 3.214 17 H -0.189 1.189 18 H -0.225 1.225 19 H -0.226 1.226 20 C 0.077 3.923 21 H 0.090 0.910 22 C -0.175 4.175 23 C -0.017 4.017 24 N -0.264 5.264 25 C -0.075 4.075 26 C -0.065 4.065 27 N -0.275 5.275 28 C -0.123 4.123 29 C -0.070 4.070 30 C -0.071 4.071 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.039 0.961 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.093 0.907 51 H 0.039 0.961 52 H 0.045 0.955 53 H 0.119 0.881 54 H 0.109 0.891 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.423 -1.445 18.730 21.986 hybrid contribution 1.045 0.074 -1.418 1.763 sum -10.378 -1.371 17.312 20.231 Atomic orbital electron populations 1.22319 0.93002 1.03027 1.04583 1.21588 0.95834 0.98409 0.88074 0.86672 1.21007 0.77233 0.86619 0.84612 1.90540 1.51448 1.18386 1.85176 1.48034 1.59128 1.15935 1.09748 1.22600 0.96746 0.80391 1.02599 1.21105 0.92847 0.92793 0.89173 0.96425 1.21692 1.00395 0.95032 1.01395 1.44279 1.70368 1.10624 1.06697 1.19401 1.00944 1.22219 0.95082 0.90916 1.25957 0.95808 0.99902 1.02092 1.70060 1.06480 1.40986 1.39678 0.85365 0.77431 0.77945 0.80657 1.18920 1.22486 1.22627 1.20529 0.89696 0.84559 0.97496 0.90985 1.21735 0.99761 0.98476 0.97525 1.22091 0.96460 0.96562 0.86633 1.61980 1.58254 1.04070 1.02093 1.22338 0.96155 0.90546 0.98431 1.22094 0.98542 0.96524 0.89350 1.62260 1.57661 1.04225 1.03344 1.22403 0.97680 0.99797 0.92412 1.22202 0.95754 0.90636 0.98428 1.22279 1.00494 0.96206 0.88114 0.90085 0.89366 0.92740 0.90886 0.87221 0.92644 0.90105 0.93784 0.94461 0.95482 0.93731 0.95758 0.91471 0.92588 0.93525 0.90135 0.96089 0.89517 0.89900 0.90720 0.96112 0.95542 0.88097 0.89108 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 7.99 71.98 0.58 -2.63 16 2 C 0.07 1.77 1.85 44.17 0.08 1.86 16 3 H 0.12 2.52 6.52 -2.39 -0.02 2.50 16 4 C 0.52 17.34 6.86 87.65 0.60 17.94 16 5 O -0.58 -23.33 13.40 -3.01 -0.04 -23.37 16 6 N -0.60 -20.57 2.60 -817.16 -2.12 -22.69 16 7 C 0.10 2.92 5.26 86.57 0.46 3.37 16 8 C 0.15 5.34 3.24 45.18 0.15 5.49 16 9 H 0.02 0.71 7.38 -2.39 -0.02 0.69 16 10 C -0.13 -3.94 8.01 71.98 0.58 -3.37 16 11 N -0.60 -27.35 2.67 -649.87 -1.74 -29.09 16 12 C -0.25 -12.34 8.29 84.03 0.70 -11.65 16 13 H 0.07 3.51 6.54 -2.91 -0.02 3.49 16 14 C -0.04 -2.21 5.20 84.86 0.44 -1.77 16 15 N -0.93 -52.14 9.72 21.65 0.21 -51.93 16 16 Si 0.96 43.25 29.56 68.60 2.03 45.28 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 19 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 20 C 0.18 8.63 2.32 45.03 0.10 8.73 16 21 H 0.07 3.92 6.13 -2.39 -0.01 3.90 16 22 C -0.12 -5.46 8.93 71.98 0.64 -4.82 16 23 C 0.11 4.35 5.95 86.41 0.51 4.86 16 24 N -0.54 -13.61 4.51 -874.88 -3.94 -17.55 16 25 C 0.05 1.36 4.53 86.31 0.39 1.75 16 26 C 0.06 1.45 5.62 86.31 0.49 1.94 16 27 N -0.55 -10.67 4.97 -921.90 -4.58 -15.25 16 28 C 0.02 0.37 9.60 127.69 1.23 1.60 16 29 C 0.06 1.06 5.62 86.31 0.49 1.54 16 30 C 0.06 1.06 5.38 86.31 0.46 1.52 16 31 H 0.08 1.35 6.93 -2.39 -0.02 1.33 16 32 H 0.09 1.31 6.73 -2.39 -0.02 1.29 16 33 H 0.05 1.17 6.74 -2.39 -0.02 1.15 16 34 H 0.07 2.07 8.10 -2.39 -0.02 2.05 16 35 H 0.11 2.34 4.84 -2.39 -0.01 2.33 16 36 H 0.05 1.69 7.60 -2.39 -0.02 1.67 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.58 7.47 -2.39 -0.02 1.57 16 39 H 0.25 13.70 8.32 -92.71 -0.77 12.93 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 41 H 0.04 2.34 7.04 -2.39 -0.02 2.32 16 42 H 0.02 1.08 6.99 -2.38 -0.02 1.06 16 43 H 0.07 2.86 7.00 -2.39 -0.02 2.85 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 45 H 0.05 1.10 6.53 -2.39 -0.02 1.08 16 46 H 0.08 2.57 5.51 -2.39 -0.01 2.56 16 47 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.09 1.75 8.13 -2.39 -0.02 1.73 16 49 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 51 H 0.02 0.33 8.14 -2.38 -0.02 0.31 16 52 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 53 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 54 H 0.09 1.49 8.04 -2.39 -0.02 1.47 16 55 H 0.06 0.93 6.81 -2.39 -0.02 0.91 16 Total: -1.00 -64.63 396.02 -1.44 -66.07 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.86 Total: 22.16 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 7.89 Total: 26.37 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -12.17 Total: -136.51 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.04 Total: -23.37 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.63 -1.44 -66.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459115.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.725 kcal (2) G-P(sol) polarization free energy of solvation -64.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds