Wall clock time and date at job start Tue Mar 31 2020 22:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48503 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47284 * 300.00049 * 3 2 1 6 6 H 1.48503 * 109.46758 * 59.99875 * 3 2 1 7 7 C 1.37876 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47024 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47032 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54306 * 68.37397 * 11 10 9 13 13 O 1.42094 * 110.54420 * 291.62176 * 11 10 9 14 14 N 1.65601 * 104.45007 * 179.97438 * 11 10 9 15 15 C 1.34781 * 119.99832 * 64.99727 * 14 11 10 16 16 O 1.21642 * 119.99677 * 0.02562 * 15 14 11 17 17 C 1.47183 * 119.99922 * 180.02562 * 15 14 11 18 18 C 1.36008 * 123.46283 * 359.97438 * 17 15 14 19 19 S 1.70446 * 110.81990 * 180.02562 * 18 17 15 20 20 C 1.75505 * 92.44378 * 0.02562 * 19 18 17 21 21 C 1.32774 * 110.57585 * 359.97438 * 20 19 18 22 22 C 1.50701 * 123.45452 * 179.97438 * 21 20 19 23 23 F 1.39905 * 109.46509 * 119.98140 * 22 21 20 24 24 F 1.39903 * 109.47187 * 239.97127 * 22 21 20 25 25 H 0.96998 * 120.00743 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47503 * 59.99395 * 9 7 2 27 27 H 1.09004 * 109.47266 * 299.99490 * 9 7 2 28 28 H 1.08996 * 109.47447 * 59.99394 * 10 9 7 29 29 H 1.08996 * 109.46897 * 299.99550 * 10 9 7 30 30 H 0.97000 * 120.00334 * 245.00299 * 14 11 10 31 31 H 1.08005 * 124.59041 * 0.02562 * 18 17 15 32 32 H 1.08007 * 124.71283 * 180.26334 * 20 19 18 33 33 H 1.08990 * 109.47396 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2331 0.0013 12 8 0.6640 -5.4201 -1.2354 13 8 0.6649 -5.4194 1.2385 14 7 2.5206 -6.3927 0.0005 15 6 3.3479 -6.5123 1.0578 16 8 3.2259 -5.7688 2.0127 17 6 4.3990 -7.5427 1.0569 18 6 4.5978 -8.4102 0.0285 19 16 5.8958 -9.4623 0.3657 20 6 6.1858 -8.7239 1.9313 21 6 5.3245 -7.7370 2.1484 22 6 5.3134 -6.9056 3.4053 23 9 5.5261 -5.5622 3.0776 24 9 4.0749 -7.0396 4.0421 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8721 -3.6043 0.8904 29 1 2.8720 -3.6043 -0.8895 30 1 2.6177 -6.9858 -0.7608 31 1 4.0125 -8.4299 -0.8790 32 1 6.9604 -9.0269 2.6202 33 1 6.1042 -7.2464 4.0734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892926878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:26 Heat of formation + Delta-G solvation = -177.703571 kcal Electronic energy + Delta-G solvation = -25173.054447 eV Core-core repulsion = 20895.756129 eV Total energy + Delta-G solvation = -4277.298319 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.024 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.81024 -46.81678 -40.33011 -37.63296 -36.65522 -35.60401 -34.57329 -33.86149 -31.15645 -31.07941 -27.17758 -25.60542 -25.00743 -22.49735 -21.60243 -19.90446 -19.45398 -18.57199 -17.94899 -17.48979 -17.09110 -16.92924 -16.46928 -16.14890 -15.80929 -15.14745 -14.94801 -14.58837 -14.47102 -13.72821 -13.68998 -13.65254 -13.43414 -13.26893 -13.13313 -12.70178 -12.51800 -12.35676 -11.88152 -11.77620 -11.70114 -11.59437 -11.14081 -11.05972 -10.96717 -10.84425 -10.43329 -10.32987 -10.27344 -9.72760 -9.67518 -9.14233 -9.05516 -8.46515 -6.08549 -4.13600 0.14492 0.50331 0.86816 1.16538 1.22223 2.64641 2.82378 3.29406 3.36401 3.40691 3.63409 3.90754 4.06677 4.13090 4.24315 4.41046 4.57614 4.62548 4.73995 4.87834 4.99470 5.03729 5.26916 5.36698 5.48268 5.64162 5.77377 6.49649 6.60307 7.32085 7.38910 7.44633 7.85118 8.20723 8.89623 9.50805 11.02678 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.003482 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.967301 B = 8039.023450 C = 8789.172015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.574 4.574 11 S 2.565 3.435 12 O -0.954 6.954 13 O -0.934 6.934 14 N -1.055 6.055 15 C 0.590 3.410 16 O -0.462 6.462 17 C -0.132 4.132 18 C -0.209 4.209 19 S 0.233 5.767 20 C -0.200 4.200 21 C -0.137 4.137 22 C 0.339 3.661 23 F -0.185 7.185 24 F -0.185 7.185 25 H 0.264 0.736 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.133 0.867 29 H 0.121 0.879 30 H 0.424 0.576 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.277 -23.104 0.857 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.709 4.709 11 S 2.666 3.334 12 O -0.945 6.945 13 O -0.924 6.924 14 N -0.815 5.815 15 C 0.374 3.626 16 O -0.332 6.332 17 C -0.151 4.151 18 C -0.347 4.347 19 S 0.501 5.499 20 C -0.336 4.336 21 C -0.150 4.150 22 C 0.283 3.717 23 F -0.167 7.167 24 F -0.167 7.167 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.259 0.741 31 H 0.198 0.802 32 H 0.199 0.801 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.757 -23.861 0.791 28.605 hybrid contribution 0.218 2.055 0.163 2.073 sum 15.974 -21.806 0.955 27.048 Atomic orbital electron populations 1.69963 1.06106 1.27086 1.49750 1.25062 0.94984 0.99539 0.94896 0.86391 0.79975 0.83082 0.77718 1.19602 1.20832 1.20755 1.21020 0.93171 0.89536 1.51934 0.91875 1.19004 0.92622 0.90332 0.99031 1.30333 1.13704 1.15893 1.10936 1.06768 0.74881 0.77253 0.74533 1.93588 1.70369 1.85356 1.45157 1.93607 1.70132 1.84265 1.44362 1.55337 1.49213 1.50547 1.26429 1.17414 0.80278 0.83342 0.81593 1.91085 1.68700 1.41784 1.31661 1.19952 0.99910 1.00188 0.95066 1.25783 1.04462 1.00853 1.03586 1.83154 1.24785 1.31817 1.10186 1.25436 1.04634 1.00949 1.02566 1.20500 0.97577 0.99543 0.97351 1.19832 0.84543 0.78336 0.88986 1.93075 1.94740 1.35250 1.93587 1.93076 1.45734 1.95529 1.82313 0.92591 0.94776 0.94503 0.84838 0.86043 0.74122 0.80228 0.80141 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 9 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 10 C -0.57 -11.89 5.82 37.16 0.22 -11.68 16 11 S 2.57 48.72 5.11 -107.50 -0.55 48.17 16 12 O -0.95 -19.27 18.08 -57.54 -1.04 -20.31 16 13 O -0.93 -21.32 17.04 -64.78 -1.10 -22.42 16 14 N -1.05 -14.55 5.57 30.38 0.17 -14.38 16 15 C 0.59 8.92 7.52 -12.63 -0.10 8.83 16 16 O -0.46 -8.83 11.07 -11.88 -0.13 -8.96 16 17 C -0.13 -1.48 5.98 -104.63 -0.63 -2.11 16 18 C -0.21 -1.52 10.38 29.93 0.31 -1.21 16 19 S 0.23 1.12 23.02 -107.50 -2.48 -1.35 16 20 C -0.20 -1.18 10.86 28.86 0.31 -0.87 16 21 C -0.14 -1.36 5.44 -104.06 -0.57 -1.92 16 22 C 0.34 3.80 4.97 36.01 0.18 3.98 16 23 F -0.19 -2.73 15.81 2.25 0.04 -2.70 16 24 F -0.19 -2.76 15.80 2.25 0.04 -2.72 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.13 2.77 7.19 -51.93 -0.37 2.39 16 29 H 0.12 2.16 8.14 -51.93 -0.42 1.74 16 30 H 0.42 3.90 7.29 -34.47 -0.25 3.65 16 31 H 0.18 0.80 7.01 -52.48 -0.37 0.43 16 32 H 0.18 0.44 8.06 -52.48 -0.42 0.02 16 33 H 0.12 0.70 8.04 -51.93 -0.42 0.28 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -39.77 324.23 -7.92 -47.68 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -2.64 Total: -0.51 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -0.82 Total: -17.85 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.91 Total: -40.65 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -2.28 Total: -51.70 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.07 Total: -5.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 49.84 SS G_CDS: -3.02 Total: 46.82 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -39.77 -7.92 -47.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892926878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.019 kcal (2) G-P(sol) polarization free energy of solvation -39.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds