Wall clock time and date at job start Tue Mar 31 2020 22:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48503 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47284 * 300.00049 * 3 2 1 6 6 H 1.48503 * 109.46758 * 59.99875 * 3 2 1 7 7 C 1.37876 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47024 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47032 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54306 * 68.37397 * 11 10 9 13 13 O 1.42094 * 110.54420 * 291.62176 * 11 10 9 14 14 N 1.65601 * 104.45007 * 179.97438 * 11 10 9 15 15 C 1.34781 * 119.99832 * 64.99727 * 14 11 10 16 16 O 1.21642 * 119.99677 * 0.02562 * 15 14 11 17 17 C 1.47183 * 119.99922 * 180.02562 * 15 14 11 18 18 C 1.36008 * 123.46283 * 359.97438 * 17 15 14 19 19 S 1.70446 * 110.81990 * 180.02562 * 18 17 15 20 20 C 1.75505 * 92.44378 * 0.02562 * 19 18 17 21 21 C 1.32774 * 110.57585 * 359.97438 * 20 19 18 22 22 C 1.50701 * 123.45452 * 179.97438 * 21 20 19 23 23 F 1.39905 * 109.46509 * 119.98140 * 22 21 20 24 24 F 1.39903 * 109.47187 * 239.97127 * 22 21 20 25 25 H 0.96998 * 120.00743 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47503 * 59.99395 * 9 7 2 27 27 H 1.09004 * 109.47266 * 299.99490 * 9 7 2 28 28 H 1.08996 * 109.47447 * 59.99394 * 10 9 7 29 29 H 1.08996 * 109.46897 * 299.99550 * 10 9 7 30 30 H 0.97000 * 120.00334 * 245.00299 * 14 11 10 31 31 H 1.08005 * 124.59041 * 0.02562 * 18 17 15 32 32 H 1.08007 * 124.71283 * 180.26334 * 20 19 18 33 33 H 1.08990 * 109.47396 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2331 0.0013 12 8 0.6640 -5.4201 -1.2354 13 8 0.6649 -5.4194 1.2385 14 7 2.5206 -6.3927 0.0005 15 6 3.3479 -6.5123 1.0578 16 8 3.2259 -5.7688 2.0127 17 6 4.3990 -7.5427 1.0569 18 6 4.5978 -8.4102 0.0285 19 16 5.8958 -9.4623 0.3657 20 6 6.1858 -8.7239 1.9313 21 6 5.3245 -7.7370 2.1484 22 6 5.3134 -6.9056 3.4053 23 9 5.5261 -5.5622 3.0776 24 9 4.0749 -7.0396 4.0421 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8721 -3.6043 0.8904 29 1 2.8720 -3.6043 -0.8895 30 1 2.6177 -6.9858 -0.7608 31 1 4.0125 -8.4299 -0.8790 32 1 6.9604 -9.0269 2.6202 33 1 6.1042 -7.2464 4.0734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892926878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:25 Heat of formation + Delta-G solvation = -208.967439 kcal Electronic energy + Delta-G solvation = -25174.410150 eV Core-core repulsion = 20895.756129 eV Total energy + Delta-G solvation = -4278.654022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.024 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.72979 -47.78019 -41.40610 -38.53467 -38.14460 -37.29609 -36.00286 -35.75821 -33.21274 -31.74863 -27.90479 -27.65580 -25.85272 -23.78948 -23.21297 -21.01855 -20.56965 -19.60059 -19.05685 -18.71240 -18.30808 -18.01864 -17.76038 -17.39520 -16.98016 -16.68748 -16.56000 -16.29784 -15.59630 -15.25992 -14.67644 -14.52221 -14.36213 -14.19251 -14.14517 -13.96257 -13.83273 -13.75174 -13.51439 -13.43288 -13.31831 -12.98785 -12.87381 -12.52992 -12.36957 -12.26744 -12.06047 -11.88271 -11.76817 -11.43574 -11.10758 -10.68061 -10.25145 -9.54916 -8.29145 -6.43367 -1.07653 -0.45407 0.41663 0.43392 0.69792 1.31336 1.38486 1.40421 1.53796 1.79991 2.35444 2.50807 2.96716 3.02530 3.04208 3.26244 3.45592 3.49233 3.80720 3.95405 3.98731 4.03875 4.16076 4.33379 4.38985 4.64655 4.79836 4.93033 5.18583 5.20268 5.59537 5.64565 6.01528 6.37009 6.68800 7.26492 8.83665 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.003482 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.967301 B = 8039.023450 C = 8789.172015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.977 3.023 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.023 3.977 10 C -0.577 4.577 11 S 2.602 3.398 12 O -0.966 6.966 13 O -0.976 6.976 14 N -1.034 6.034 15 C 0.584 3.416 16 O -0.512 6.512 17 C -0.177 4.177 18 C -0.205 4.205 19 S 0.327 5.673 20 C -0.186 4.186 21 C -0.171 4.171 22 C 0.320 3.680 23 F -0.214 7.214 24 F -0.215 7.215 25 H 0.269 0.731 26 H 0.018 0.982 27 H 0.004 0.996 28 H 0.130 0.870 29 H 0.151 0.849 30 H 0.446 0.554 31 H 0.206 0.794 32 H 0.219 0.781 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.627 -25.397 -0.393 32.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.800 3.200 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.090 0.910 9 C -0.016 4.016 10 C -0.710 4.710 11 S 2.701 3.299 12 O -0.956 6.956 13 O -0.966 6.966 14 N -0.801 5.801 15 C 0.371 3.629 16 O -0.386 6.386 17 C -0.196 4.196 18 C -0.343 4.343 19 S 0.595 5.405 20 C -0.322 4.322 21 C -0.183 4.183 22 C 0.264 3.736 23 F -0.195 7.195 24 F -0.197 7.197 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.148 0.852 29 H 0.170 0.830 30 H 0.286 0.714 31 H 0.222 0.778 32 H 0.236 0.764 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 19.119 -26.172 -0.495 32.416 hybrid contribution -0.713 2.518 0.483 2.661 sum 18.407 -23.654 -0.012 29.972 Atomic orbital electron populations 1.70097 1.07999 1.28413 1.50643 1.26121 0.95936 1.03869 0.94153 0.85224 0.78979 0.77764 0.78028 1.18232 1.19689 1.20343 1.21479 0.93856 0.90733 1.51928 0.90998 1.18839 0.93385 0.92646 0.96697 1.30225 1.12882 1.15604 1.12298 1.05335 0.74573 0.76781 0.73215 1.93562 1.71190 1.85512 1.45349 1.93553 1.71794 1.84841 1.46426 1.54710 1.48164 1.49628 1.27553 1.18172 0.80562 0.83615 0.80530 1.91059 1.70103 1.44034 1.33425 1.19740 1.00650 1.01384 0.97834 1.26263 1.05128 0.99744 1.03176 1.82997 1.21271 1.28450 1.07801 1.25939 1.03596 0.98789 1.03838 1.20424 0.99432 1.01518 0.96893 1.20676 0.84500 0.77326 0.91053 1.93001 1.94797 1.37761 1.93970 1.93001 1.48053 1.95576 1.83036 0.92222 0.96372 0.97746 0.85158 0.83048 0.71404 0.77753 0.76394 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.98 45.07 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.02 1.31 4.98 29.85 0.15 1.45 16 10 C -0.58 -24.80 5.82 71.98 0.42 -24.38 16 11 S 2.60 101.89 5.11 -56.49 -0.29 101.60 16 12 O -0.97 -39.34 18.08 -127.65 -2.31 -41.64 16 13 O -0.98 -46.95 17.04 -120.72 -2.06 -49.01 16 14 N -1.03 -28.31 5.57 -176.04 -0.98 -29.29 16 15 C 0.58 17.93 7.52 86.59 0.65 18.59 16 16 O -0.51 -20.69 11.07 12.20 0.14 -20.55 16 17 C -0.18 -3.73 5.98 -19.87 -0.12 -3.85 16 18 C -0.20 -2.27 10.38 67.30 0.70 -1.57 16 19 S 0.33 1.49 23.02 -56.49 -1.30 0.19 16 20 C -0.19 -1.41 10.86 66.64 0.72 -0.69 16 21 C -0.17 -3.08 5.44 -19.46 -0.11 -3.19 16 22 C 0.32 7.11 4.97 71.24 0.35 7.46 16 23 F -0.21 -6.57 15.81 44.97 0.71 -5.86 16 24 F -0.22 -6.72 15.80 44.97 0.71 -6.01 16 25 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.13 5.70 7.19 -2.39 -0.02 5.69 16 29 H 0.15 5.42 8.14 -2.39 -0.02 5.40 16 30 H 0.45 7.49 7.29 -96.74 -0.70 6.79 16 31 H 0.21 0.97 7.01 -2.91 -0.02 0.95 16 32 H 0.22 -0.17 8.06 -2.91 -0.02 -0.20 16 33 H 0.17 1.70 8.04 -2.39 -0.02 1.69 16 Total: -1.00 -93.15 324.23 0.88 -92.27 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.48 Total: 6.63 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 3.47 Total: -37.40 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -0.70 Total: -87.32 kcal Atomic # 8 Polarization: -106.97 SS G_CDS: -4.23 Total: -111.20 kcal Atomic # 9 Polarization: -13.29 SS G_CDS: 1.42 Total: -11.87 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 103.38 SS G_CDS: -1.59 Total: 101.79 kcal Total: -93.15 0.88 -92.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892926878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.702 kcal (2) G-P(sol) polarization free energy of solvation -93.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds