Wall clock time and date at job start Tue Mar 31 2020 22:08:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08997 * 110.64687 * 2 1
4 4 C 1.54603 * 110.72659 * 123.15675 * 2 1 3
5 5 C 1.53994 * 105.13842 * 140.49348 * 4 2 1
6 6 N 1.47897 * 107.06108 * 1.22439 * 5 4 2
7 7 C 1.46901 * 111.00209 * 214.15771 * 6 5 4
8 8 C 1.52995 * 109.47341 * 174.72306 * 7 6 5
9 9 N 1.46496 * 109.47206 * 183.40593 * 8 7 6
10 10 C 1.34780 * 120.00297 * 180.02562 * 9 8 7
11 11 O 1.21588 * 119.99804 * 5.34309 * 10 9 8
12 12 N 1.34779 * 120.00089 * 185.34702 * 10 9 8
13 13 C 1.46966 * 120.59147 * 184.92827 * 12 10 9
14 14 C 1.53369 * 108.63495 * 235.20418 * 13 12 10
15 15 H 1.08991 * 109.75232 * 70.40134 * 14 13 12
16 16 C 1.52992 * 109.61060 * 190.83451 * 14 13 12
17 17 N 1.46967 * 108.63162 * 310.57671 * 14 13 12
18 18 C 1.36939 * 120.59409 * 235.20392 * 17 14 13
19 19 H 1.08004 * 119.99705 * 56.10109 * 18 17 14
20 20 C 1.38811 * 120.00173 * 236.09964 * 18 17 14
21 21 N 1.31618 * 119.99825 * 17.73964 * 20 18 17
22 22 Si 1.86800 * 119.99972 * 197.73946 * 20 18 17
23 23 H 1.48502 * 109.47102 * 0.02562 * 22 20 18
24 24 H 1.48494 * 109.47318 * 120.00106 * 22 20 18
25 25 H 1.48496 * 109.47026 * 240.00061 * 22 20 18
26 26 C 1.46966 * 118.81448 * 55.22723 * 17 14 13
27 27 H 1.09001 * 109.61025 * 64.68628 * 26 17 14
28 28 C 1.53001 * 109.61100 * 185.02935 * 26 17 14
29 29 C 1.46959 * 120.59638 * 4.90394 * 12 10 9
30 30 C 1.48536 * 105.81992 * 334.66969 * 6 5 4
31 31 H 1.09005 * 109.46674 * 298.29479 * 1 2 3
32 32 H 1.08999 * 109.47134 * 58.29547 * 1 2 3
33 33 H 1.09004 * 109.46912 * 178.29958 * 1 2 3
34 34 H 1.08998 * 110.30701 * 21.57207 * 4 2 1
35 35 H 1.09001 * 110.30386 * 259.41116 * 4 2 1
36 36 H 1.09008 * 109.91243 * 241.86963 * 5 4 2
37 37 H 1.08995 * 109.91507 * 120.58045 * 5 4 2
38 38 H 1.09006 * 109.47127 * 54.72033 * 7 6 5
39 39 H 1.08996 * 109.46946 * 294.72533 * 7 6 5
40 40 H 1.08993 * 109.47522 * 63.40191 * 8 7 6
41 41 H 1.09006 * 109.46719 * 303.40069 * 8 7 6
42 42 H 0.97006 * 120.00144 * 359.97438 * 9 8 7
43 43 H 1.08997 * 109.60694 * 115.45547 * 13 12 10
44 44 H 1.08999 * 109.60917 * 354.94667 * 13 12 10
45 45 H 1.09004 * 109.47438 * 183.39254 * 16 14 13
46 46 H 1.09008 * 109.47246 * 303.39369 * 16 14 13
47 47 H 1.09005 * 109.47674 * 63.38869 * 16 14 13
48 48 H 0.97006 * 119.99637 * 174.96052 * 21 20 18
49 49 H 1.09000 * 109.47288 * 50.89660 * 28 26 17
50 50 H 1.09003 * 109.46845 * 290.90107 * 28 26 17
51 51 H 1.08993 * 109.47216 * 170.89996 * 28 26 17
52 52 H 1.09004 * 109.60598 * 5.05215 * 29 12 10
53 53 H 1.09003 * 109.61159 * 244.54362 * 29 12 10
54 54 H 1.09005 * 110.66828 * 157.64232 * 30 6 5
55 55 H 1.08997 * 110.66899 * 280.77313 * 30 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9143 1.0200 0.0000
4 6 2.0771 -0.7908 1.2105
5 6 3.2921 -1.5662 0.6684
6 7 3.4360 -1.2050 -0.7585
7 6 3.9293 -2.3448 -1.5431
8 6 3.9401 -1.9755 -3.0278
9 7 4.3545 -3.1380 -3.8171
10 6 4.4377 -3.0464 -5.1592
11 8 4.2637 -1.9751 -5.7073
12 7 4.7136 -4.1423 -5.8937
13 6 4.9138 -4.0384 -7.3459
14 6 3.9437 -4.9993 -8.0443
15 1 2.9236 -4.6278 -7.9475
16 6 4.3105 -5.1128 -9.5253
17 7 4.0503 -6.3194 -7.4072
18 6 4.3307 -7.4328 -8.1534
19 1 5.2198 -7.4626 -8.7658
20 6 3.4722 -8.5232 -8.1228
21 7 2.2420 -8.3799 -7.6774
22 14 4.0630 -10.1940 -8.7136
23 1 5.4752 -10.0899 -9.1610
24 1 3.9673 -11.1743 -7.6024
25 1 3.2163 -10.6460 -9.8467
26 6 3.8501 -6.4233 -5.9549
27 1 2.8233 -6.1546 -5.7071
28 6 4.1302 -7.8567 -5.4992
29 6 4.8202 -5.4623 -5.2566
30 6 2.0821 -0.7939 -1.2106
31 1 -0.3633 0.4872 0.9049
32 1 -0.3633 0.5401 -0.8743
33 1 -0.3633 -1.0273 -0.0305
34 1 1.3219 -1.4830 1.5828
35 1 2.3867 -0.1067 2.0006
36 1 3.1213 -2.6386 0.7646
37 1 4.1899 -1.2799 1.2162
38 1 3.2761 -3.2033 -1.3869
39 1 4.9409 -2.5951 -1.2235
40 1 4.6393 -1.1560 -3.1933
41 1 2.9400 -1.6671 -3.3327
42 1 4.5698 -3.9735 -3.3737
43 1 5.9398 -4.3099 -7.5940
44 1 4.7142 -3.0172 -7.6706
45 1 3.5842 -5.7484 -10.0319
46 1 4.3041 -4.1213 -9.9782
47 1 5.3047 -5.5495 -9.6210
48 1 1.6198 -9.1227 -7.7238
49 1 5.0987 -8.1774 -5.8831
50 1 3.3516 -8.5177 -5.8799
51 1 4.1399 -7.8963 -4.4100
52 1 4.5589 -5.3814 -4.2015
53 1 5.8396 -5.8352 -5.3560
54 1 2.1481 -0.1553 -2.0916
55 1 1.4623 -1.6673 -1.4128
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000897469435.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:08:16
Heat of formation + Delta-G solvation = -11.802135 kcal
Electronic energy + Delta-G solvation = -30948.438823 eV
Core-core repulsion = 27020.402110 eV
Total energy + Delta-G solvation = -3928.036713 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.242 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.44125 -40.17733 -39.06709 -36.46585 -35.79374 -34.73244 -33.91107 -33.08017
-31.07843 -29.58424 -28.93727 -27.61368 -27.30572 -26.65149 -25.25836 -23.44221
-22.08239 -21.90979 -21.68521 -21.04464 -20.65648 -19.20145 -17.90161 -17.67204
-17.08543 -16.80965 -16.70442 -16.30884 -16.21953 -15.82542 -15.54716 -15.33044
-15.23661 -14.88902 -14.71719 -14.32261 -14.00972 -13.90859 -13.73989 -13.63984
-13.33437 -13.24962 -13.06060 -12.93774 -12.86464 -12.72381 -12.45114 -12.30452
-12.26430 -12.19366 -12.17332 -12.12778 -11.80656 -11.73242 -11.61638 -11.58705
-11.51574 -11.40574 -11.12415 -10.31486 -10.17874 -9.51450 -9.46438 -8.26445
-7.70926 -5.60786 1.44046 1.50359 1.57971 1.61291 2.11722 2.48869
2.76493 3.18977 3.25178 3.52073 3.60477 3.67174 3.89757 4.02699
4.11521 4.14991 4.24309 4.29883 4.30494 4.42155 4.48048 4.50914
4.51917 4.59629 4.61100 4.71567 4.76419 4.77614 4.82760 4.85554
4.88844 4.89206 4.92430 4.97408 4.99621 5.02071 5.08880 5.21331
5.23380 5.28652 5.38986 5.40565 5.43619 5.44265 5.62401 5.63480
5.76761 5.87262 5.93352 5.98151 6.04758 6.61830 6.94810 7.26560
7.52702 7.78058 8.54730 9.15779
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.017332 B = 0.002392 C = 0.002266
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1615.113278 B =11704.670016 C =12352.751839
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.094 4.094
3 H 0.081 0.919
4 C -0.124 4.124
5 C 0.034 3.966
6 N -0.524 5.524
7 C 0.047 3.953
8 C 0.147 3.853
9 N -0.736 5.736
10 C 0.702 3.298
11 O -0.637 6.637
12 N -0.621 5.621
13 C 0.129 3.871
14 C 0.152 3.848
15 H -0.006 1.006
16 C -0.115 4.115
17 N -0.589 5.589
18 C -0.262 4.262
19 H 0.049 0.951
20 C 0.001 3.999
21 N -0.910 5.910
22 Si 0.940 3.060
23 H -0.264 1.264
24 H -0.284 1.284
25 H -0.295 1.295
26 C 0.181 3.819
27 H -0.005 1.005
28 C -0.134 4.134
29 C 0.107 3.893
30 C 0.031 3.969
31 H 0.069 0.931
32 H 0.055 0.945
33 H 0.052 0.948
34 H 0.074 0.926
35 H 0.083 0.917
36 H 0.050 0.950
37 H 0.087 0.913
38 H 0.048 0.952
39 H 0.096 0.904
40 H 0.060 0.940
41 H 0.049 0.951
42 H 0.407 0.593
43 H 0.071 0.929
44 H 0.077 0.923
45 H 0.039 0.961
46 H 0.065 0.935
47 H 0.058 0.942
48 H 0.252 0.748
49 H 0.049 0.951
50 H 0.058 0.942
51 H 0.057 0.943
52 H 0.093 0.907
53 H 0.076 0.924
54 H 0.073 0.927
55 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.275 11.176 18.032 21.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.114 4.114
3 H 0.100 0.900
4 C -0.162 4.162
5 C -0.093 4.093
6 N -0.249 5.249
7 C -0.082 4.082
8 C 0.022 3.978
9 N -0.395 5.395
10 C 0.404 3.596
11 O -0.519 6.519
12 N -0.355 5.355
13 C 0.004 3.996
14 C 0.046 3.954
15 H 0.011 0.989
16 C -0.173 4.173
17 N -0.315 5.315
18 C -0.392 4.392
19 H 0.067 0.933
20 C -0.198 4.198
21 N -0.551 5.551
22 Si 0.768 3.232
23 H -0.189 1.189
24 H -0.210 1.210
25 H -0.222 1.222
26 C 0.074 3.926
27 H 0.013 0.987
28 C -0.192 4.192
29 C -0.017 4.017
30 C -0.097 4.097
31 H 0.088 0.912
32 H 0.074 0.926
33 H 0.071 0.929
34 H 0.093 0.907
35 H 0.101 0.899
36 H 0.068 0.932
37 H 0.105 0.895
38 H 0.066 0.934
39 H 0.114 0.886
40 H 0.079 0.921
41 H 0.068 0.932
42 H 0.246 0.754
43 H 0.089 0.911
44 H 0.096 0.904
45 H 0.058 0.942
46 H 0.084 0.916
47 H 0.077 0.923
48 H 0.061 0.939
49 H 0.068 0.932
50 H 0.077 0.923
51 H 0.076 0.924
52 H 0.111 0.889
53 H 0.094 0.906
54 H 0.091 0.909
55 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 2.411 12.218 17.659 21.608
hybrid contribution -0.829 -2.118 -0.478 2.324
sum 1.583 10.100 17.181 19.993
Atomic orbital electron populations
1.21761 0.93808 1.01930 1.02443 1.22060 0.95987 0.99563 0.93748
0.90016 1.22496 0.96708 0.99127 0.97871 1.22943 0.99650 0.98769
0.87966 1.64714 1.23859 1.33094 1.03229 1.22342 1.02279 0.92436
0.91114 1.21053 0.99520 0.87358 0.89838 1.45024 1.73959 1.16389
1.04088 1.15983 0.77829 0.83590 0.82245 1.90831 1.60221 1.28756
1.72113 1.47231 1.73594 1.06433 1.08287 1.21949 0.99459 0.99871
0.78302 1.20947 0.93940 0.86973 0.93570 0.98859 1.21514 1.01413
1.00408 0.93968 1.44173 1.83181 1.02379 1.01729 1.18776 1.03440
0.92342 1.24671 0.93315 1.26185 0.94424 1.02063 0.97141 1.70165
1.04317 1.31588 1.49076 0.85667 0.78654 0.81408 0.77490 1.18862
1.21045 1.22152 1.20571 0.93386 0.94303 0.84364 0.98734 1.21818
1.02392 0.96487 0.98492 1.22374 1.00983 0.81949 0.96428 1.23392
0.88811 0.98734 0.98754 0.91249 0.92586 0.92874 0.90730 0.89872
0.93161 0.89490 0.93354 0.88571 0.92114 0.93249 0.75436 0.91090
0.90441 0.94228 0.91571 0.92293 0.93903 0.93155 0.92301 0.92378
0.88921 0.90595 0.90854 0.93941
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.73 9.16 71.98 0.66 -1.07 16
2 C -0.09 -1.32 3.65 -9.59 -0.03 -1.35 16
3 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
4 C -0.12 -1.45 6.51 31.48 0.20 -1.24 16
5 C 0.03 0.47 6.70 86.45 0.58 1.04 16
6 N -0.52 -9.33 5.36 -883.02 -4.73 -14.07 16
7 C 0.05 0.84 4.98 86.30 0.43 1.27 16
8 C 0.15 3.59 5.56 86.38 0.48 4.07 16
9 N -0.74 -20.05 5.42 -478.54 -2.60 -22.64 16
10 C 0.70 25.57 8.29 179.05 1.49 27.06 16
11 O -0.64 -27.75 15.76 -3.99 -0.06 -27.81 16
12 N -0.62 -22.60 2.95 -836.02 -2.46 -25.06 16
13 C 0.13 4.92 5.91 86.41 0.51 5.43 16
14 C 0.15 6.66 3.65 45.02 0.16 6.82 16
15 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16
16 C -0.12 -4.51 8.20 71.98 0.59 -3.92 16
17 N -0.59 -27.84 2.72 -650.72 -1.77 -29.61 16
18 C -0.26 -13.20 6.57 84.03 0.55 -12.64 16
19 H 0.05 2.49 7.14 -2.91 -0.02 2.47 16
20 C 0.00 0.07 3.45 84.86 0.29 0.36 16
21 N -0.91 -50.59 11.71 21.65 0.25 -50.34 16
22 Si 0.94 41.49 29.59 68.60 2.03 43.52 16
23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16
24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16
25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
26 C 0.18 7.70 3.24 45.03 0.15 7.85 16
27 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16
28 C -0.13 -5.46 7.87 71.98 0.57 -4.90 16
29 C 0.11 3.54 5.83 86.42 0.50 4.04 16
30 C 0.03 0.55 4.74 86.65 0.41 0.96 16
31 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16
32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
33 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16
34 H 0.07 0.79 7.85 -2.39 -0.02 0.77 16
35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16
36 H 0.05 0.65 7.65 -2.38 -0.02 0.63 16
37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16
38 H 0.05 0.82 7.95 -2.38 -0.02 0.80 16
39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
41 H 0.05 1.36 6.70 -2.38 -0.02 1.34 16
42 H 0.41 8.92 6.04 -92.70 -0.56 8.36 16
43 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16
44 H 0.08 3.01 6.99 -2.39 -0.02 3.00 16
45 H 0.04 1.71 7.89 -2.39 -0.02 1.69 16
46 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16
47 H 0.06 2.24 7.28 -2.38 -0.02 2.22 16
48 H 0.25 13.61 8.32 -92.70 -0.77 12.84 16
49 H 0.05 2.06 7.51 -2.39 -0.02 2.04 16
50 H 0.06 2.83 5.11 -2.39 -0.01 2.82 16
51 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16
52 H 0.09 2.40 5.70 -2.38 -0.01 2.39 16
53 H 0.08 2.39 8.12 -2.39 -0.02 2.37 16
54 H 0.07 1.48 7.58 -2.38 -0.02 1.46 16
55 H 0.04 0.81 7.92 -2.39 -0.02 0.79 16
Total: -1.00 -65.47 410.68 -1.51 -66.98
By element:
Atomic # 1 Polarization: 24.95 SS G_CDS: 0.29 Total: 25.25 kcal
Atomic # 6 Polarization: 26.24 SS G_CDS: 7.54 Total: 33.78 kcal
Atomic # 7 Polarization: -130.41 SS G_CDS: -11.31 Total: -141.72 kcal
Atomic # 8 Polarization: -27.75 SS G_CDS: -0.06 Total: -27.81 kcal
Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal
Total: -65.47 -1.51 -66.98 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000897469435.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.176 kcal
(2) G-P(sol) polarization free energy of solvation -65.467 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.291 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.978 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.802 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds