Wall clock time and date at job start Tue Mar 31 2020 22:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 120.00544 * 2 1 4 4 H 1.48504 * 109.47082 * 240.00222 * 3 2 1 5 5 H 1.48505 * 109.46853 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47256 * 120.00097 * 3 2 1 7 7 C 1.38956 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00167 * 169.20560 * 7 2 1 9 9 N 1.37104 * 119.99885 * 349.20544 * 7 2 1 10 10 C 1.34770 * 119.99814 * 149.03935 * 9 7 2 11 11 O 1.21294 * 120.00239 * 356.10792 * 10 9 7 12 12 C 1.50703 * 119.99798 * 176.38043 * 10 9 7 13 13 H 1.08991 * 109.47245 * 312.21179 * 12 10 9 14 14 O 1.42907 * 109.46959 * 192.21148 * 12 10 9 15 15 C 1.50699 * 109.46824 * 72.21376 * 12 10 9 16 16 C 1.38262 * 119.99690 * 73.69243 * 15 12 10 17 17 C 1.38226 * 120.01980 * 179.72341 * 16 15 12 18 18 C 1.38238 * 120.00588 * 0.54386 * 17 16 15 19 19 C 1.38306 * 119.99477 * 359.72627 * 18 17 16 20 20 Br 1.89099 * 120.01262 * 180.02562 * 19 18 17 21 21 C 1.38202 * 119.99242 * 253.95683 * 15 12 10 22 22 C 1.46498 * 120.00199 * 329.03840 * 9 7 2 23 23 C 1.52999 * 117.49968 * 314.66638 * 22 9 7 24 24 C 1.52994 * 60.00139 * 252.50964 * 23 22 9 25 25 H 0.96998 * 119.99607 * 5.03287 * 1 2 3 26 26 H 0.96701 * 114.00318 * 300.00001 * 14 12 10 27 27 H 1.08002 * 119.99108 * 359.97438 * 16 15 12 28 28 H 1.07997 * 119.99416 * 180.26870 * 17 16 15 29 29 H 1.08004 * 120.00325 * 179.70504 * 18 17 16 30 30 H 1.08000 * 120.00185 * 0.02562 * 21 15 12 31 31 H 1.08998 * 115.54715 * 100.36567 * 22 9 7 32 32 H 1.09004 * 117.49791 * 0.02562 * 23 22 9 33 33 H 1.08997 * 117.50436 * 145.01402 * 23 22 9 34 34 H 1.09007 * 117.49919 * 252.51477 * 24 23 22 35 35 H 1.08998 * 117.52045 * 107.47641 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2126 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0745 -1.2117 -0.1757 9 7 1.3414 -2.3803 0.2213 10 6 1.7751 -3.5196 -0.3534 11 8 2.7126 -3.4921 -1.1226 12 6 1.0913 -4.8267 -0.0453 13 1 0.9660 -4.9259 1.0329 14 8 1.8880 -5.9078 -0.5338 15 6 -0.2595 -4.8565 -0.7128 16 6 -0.3505 -5.0316 -2.0813 17 6 -1.5894 -5.0648 -2.6933 18 6 -2.7375 -4.9116 -1.9388 19 6 -2.6468 -4.7308 -0.5706 20 35 -4.2170 -4.5218 0.4621 21 6 -1.4068 -4.7033 0.0423 22 6 0.1569 -2.3995 1.0831 23 6 0.2370 -1.6437 2.4110 24 6 0.2534 -3.1735 2.3994 25 1 -0.4849 0.8368 -0.0737 26 1 2.0409 -5.8839 -1.4883 27 1 0.5465 -5.1466 -2.6717 28 1 -1.6602 -5.2059 -3.7617 29 1 -3.7054 -4.9327 -2.4177 30 1 -1.3353 -4.5618 1.1106 31 1 -0.8017 -2.4060 0.5645 32 1 1.1710 -1.1318 2.6432 33 1 -0.6689 -1.1526 2.7661 34 1 -0.6420 -3.6891 2.7468 35 1 1.1980 -3.6688 2.6239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900360178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:18 Heat of formation + Delta-G solvation = -17.497484 kcal Electronic energy + Delta-G solvation = -22181.200827 eV Core-core repulsion = 18805.854832 eV Total energy + Delta-G solvation = -3375.345995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01753 -38.34125 -36.73532 -35.46423 -33.07712 -32.22132 -31.64639 -30.97471 -29.06458 -27.04372 -24.64343 -22.60866 -22.04546 -21.38845 -21.14280 -19.34784 -17.41020 -16.97520 -16.56270 -15.70201 -15.49277 -15.15944 -14.73577 -14.18945 -14.04890 -13.59925 -13.41412 -13.22710 -13.08761 -12.67725 -12.26687 -11.84435 -11.50456 -11.28844 -11.08281 -11.01275 -10.74595 -10.71393 -10.59961 -10.44067 -10.38119 -10.12971 -9.86219 -9.48958 -8.99474 -8.88853 -8.57419 -8.14142 -7.70455 -6.36141 -3.98543 1.24006 1.40155 1.71905 3.14442 3.21418 3.24293 3.61271 3.80043 4.04489 4.54919 4.57137 4.82527 4.91150 4.93168 5.07091 5.17895 5.36885 5.45804 5.52147 5.61727 5.68551 5.88395 5.93312 5.98654 6.13189 6.14027 6.28525 6.42957 6.62277 6.66322 6.82973 6.90819 7.07569 7.52158 7.84220 8.10344 8.40007 9.09151 9.30721 9.85221 10.69724 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.005291 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.840309 B = 5290.743813 C = 6287.684454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.047 3.953 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.318 4.318 8 H 0.094 0.906 9 N -0.406 5.406 10 C 0.432 3.568 11 O -0.577 6.577 12 C 0.133 3.867 13 H 0.122 0.878 14 O -0.540 6.540 15 C -0.089 4.089 16 C -0.088 4.088 17 C -0.113 4.113 18 C -0.094 4.094 19 C -0.087 4.087 20 Br -0.059 7.059 21 C -0.074 4.074 22 C 0.123 3.877 23 C -0.139 4.139 24 C -0.235 4.235 25 H 0.269 0.731 26 H 0.377 0.623 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.152 -8.911 0.953 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.159 4.159 3 Si 0.746 3.254 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.445 4.445 8 H 0.112 0.888 9 N -0.125 5.125 10 C 0.219 3.781 11 O -0.461 6.461 12 C 0.070 3.930 13 H 0.140 0.860 14 O -0.345 6.345 15 C -0.091 4.091 16 C -0.107 4.107 17 C -0.132 4.132 18 C -0.114 4.114 19 C -0.167 4.167 20 Br 0.027 6.973 21 C -0.093 4.093 22 C 0.017 3.983 23 C -0.176 4.176 24 C -0.273 4.273 25 H 0.080 0.920 26 H 0.226 0.774 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.440 -8.813 1.658 13.763 hybrid contribution 0.516 1.260 -0.775 1.566 sum -9.925 -7.553 0.883 12.503 Atomic orbital electron populations 1.69842 1.05847 1.27889 1.46453 1.25325 0.95409 0.99455 0.95748 0.86105 0.79148 0.80956 0.79175 1.19797 1.20872 1.19823 1.19441 0.93259 0.82172 1.49620 0.88847 1.43033 1.24117 1.06616 1.38721 1.20534 0.87609 0.85644 0.84307 1.90536 1.31353 1.85915 1.38315 1.20796 0.85723 0.87229 0.99249 0.86014 1.86529 1.72841 1.46208 1.28914 1.20296 0.95119 0.99368 0.94283 1.21070 0.98195 0.97359 0.94051 1.21048 0.91755 1.00453 0.99897 1.21039 0.99302 0.99200 0.91827 1.21646 0.91784 1.08558 0.94665 1.96664 1.32989 1.96765 1.70929 1.21085 0.90029 0.97450 1.00769 1.21370 0.90808 1.01624 0.84448 1.22734 1.02673 0.91509 1.00731 1.23674 1.02145 0.96518 1.04956 0.92047 0.77385 0.85436 0.85182 0.85296 0.84480 0.87170 0.88855 0.89504 0.89170 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.18 11.12 55.50 0.62 -21.57 16 2 C 0.05 1.19 4.75 -17.47 -0.08 1.11 16 3 Si 0.92 20.30 29.57 -169.99 -5.03 15.28 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.32 -8.56 8.61 -14.93 -0.13 -8.69 16 8 H 0.09 2.65 7.61 -52.49 -0.40 2.25 16 9 N -0.41 -9.97 2.90 -107.73 -0.31 -10.28 16 10 C 0.43 10.27 6.83 -10.99 -0.08 10.20 16 11 O -0.58 -15.60 16.12 -14.05 -0.23 -15.83 16 12 C 0.13 2.51 2.92 -29.03 -0.08 2.43 16 13 H 0.12 2.17 5.41 -51.93 -0.28 1.89 16 14 O -0.54 -9.81 12.96 -54.82 -0.71 -10.52 16 15 C -0.09 -1.52 4.51 -104.63 -0.47 -1.99 16 16 C -0.09 -1.39 9.22 -39.58 -0.36 -1.75 16 17 C -0.11 -1.53 10.05 -39.59 -0.40 -1.93 16 18 C -0.09 -1.27 9.79 -39.56 -0.39 -1.66 16 19 C -0.09 -1.29 6.22 -39.52 -0.25 -1.53 16 20 Br -0.06 -0.77 33.70 -68.01 -2.29 -3.06 16 21 C -0.07 -1.17 7.07 -39.55 -0.28 -1.45 16 22 C 0.12 2.59 2.13 -67.93 -0.14 2.45 16 23 C -0.14 -2.74 8.78 -26.73 -0.23 -2.97 16 24 C -0.23 -4.03 7.54 -26.73 -0.20 -4.23 16 25 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 26 H 0.38 6.05 7.37 45.56 0.34 6.38 16 27 H 0.13 1.88 7.06 -52.49 -0.37 1.51 16 28 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.14 2.06 5.45 -52.49 -0.29 1.77 16 31 H 0.11 2.46 6.61 -51.93 -0.34 2.12 16 32 H 0.09 1.98 7.90 -51.93 -0.41 1.57 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 34 H 0.09 1.30 7.14 -51.92 -0.37 0.93 16 35 H 0.09 1.53 7.59 -51.93 -0.39 1.13 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -29.97 310.84 -9.29 -39.26 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -2.92 Total: 12.04 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.10 Total: -10.01 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.30 Total: -31.85 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.94 Total: -26.35 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.06 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.97 -9.29 -39.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.764 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds