Wall clock time and date at job start Tue Mar 31 2020 22:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 120.00544 * 2 1 4 4 H 1.48504 * 109.47082 * 240.00222 * 3 2 1 5 5 H 1.48505 * 109.46853 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47256 * 120.00097 * 3 2 1 7 7 C 1.38956 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00167 * 169.20560 * 7 2 1 9 9 N 1.37104 * 119.99885 * 349.20544 * 7 2 1 10 10 C 1.34770 * 119.99814 * 149.03935 * 9 7 2 11 11 O 1.21294 * 120.00239 * 356.10792 * 10 9 7 12 12 C 1.50703 * 119.99798 * 176.38043 * 10 9 7 13 13 H 1.08991 * 109.47245 * 312.21179 * 12 10 9 14 14 O 1.42907 * 109.46959 * 192.21148 * 12 10 9 15 15 C 1.50699 * 109.46824 * 72.21376 * 12 10 9 16 16 C 1.38262 * 119.99690 * 73.69243 * 15 12 10 17 17 C 1.38226 * 120.01980 * 179.72341 * 16 15 12 18 18 C 1.38238 * 120.00588 * 0.54386 * 17 16 15 19 19 C 1.38306 * 119.99477 * 359.72627 * 18 17 16 20 20 Br 1.89099 * 120.01262 * 180.02562 * 19 18 17 21 21 C 1.38202 * 119.99242 * 253.95683 * 15 12 10 22 22 C 1.46498 * 120.00199 * 329.03840 * 9 7 2 23 23 C 1.52999 * 117.49968 * 314.66638 * 22 9 7 24 24 C 1.52994 * 60.00139 * 252.50964 * 23 22 9 25 25 H 0.96998 * 119.99607 * 5.03287 * 1 2 3 26 26 H 0.96701 * 114.00318 * 300.00001 * 14 12 10 27 27 H 1.08002 * 119.99108 * 359.97438 * 16 15 12 28 28 H 1.07997 * 119.99416 * 180.26870 * 17 16 15 29 29 H 1.08004 * 120.00325 * 179.70504 * 18 17 16 30 30 H 1.08000 * 120.00185 * 0.02562 * 21 15 12 31 31 H 1.08998 * 115.54715 * 100.36567 * 22 9 7 32 32 H 1.09004 * 117.49791 * 0.02562 * 23 22 9 33 33 H 1.08997 * 117.50436 * 145.01402 * 23 22 9 34 34 H 1.09007 * 117.49919 * 252.51477 * 24 23 22 35 35 H 1.08998 * 117.52045 * 107.47641 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2126 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0745 -1.2117 -0.1757 9 7 1.3414 -2.3803 0.2213 10 6 1.7751 -3.5196 -0.3534 11 8 2.7126 -3.4921 -1.1226 12 6 1.0913 -4.8267 -0.0453 13 1 0.9660 -4.9259 1.0329 14 8 1.8880 -5.9078 -0.5338 15 6 -0.2595 -4.8565 -0.7128 16 6 -0.3505 -5.0316 -2.0813 17 6 -1.5894 -5.0648 -2.6933 18 6 -2.7375 -4.9116 -1.9388 19 6 -2.6468 -4.7308 -0.5706 20 35 -4.2170 -4.5218 0.4621 21 6 -1.4068 -4.7033 0.0423 22 6 0.1569 -2.3995 1.0831 23 6 0.2370 -1.6437 2.4110 24 6 0.2534 -3.1735 2.3994 25 1 -0.4849 0.8368 -0.0737 26 1 2.0409 -5.8839 -1.4883 27 1 0.5465 -5.1466 -2.6717 28 1 -1.6602 -5.2059 -3.7617 29 1 -3.7054 -4.9327 -2.4177 30 1 -1.3353 -4.5618 1.1106 31 1 -0.8017 -2.4060 0.5645 32 1 1.1710 -1.1318 2.6432 33 1 -0.6689 -1.1526 2.7661 34 1 -0.6420 -3.6891 2.7468 35 1 1.1980 -3.6688 2.6239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900360178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:17 Heat of formation + Delta-G solvation = -35.296119 kcal Electronic energy + Delta-G solvation = -22181.972634 eV Core-core repulsion = 18805.854832 eV Total energy + Delta-G solvation = -3376.117802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49774 -39.78418 -38.34643 -37.07424 -34.93119 -33.46759 -33.10439 -32.51780 -30.18480 -28.60875 -26.43963 -23.83311 -23.56055 -22.84759 -22.57610 -21.04357 -18.93879 -18.58038 -18.18398 -17.31706 -16.78382 -16.72857 -16.22511 -15.86161 -15.53532 -15.12267 -14.85395 -14.60926 -14.36254 -14.13934 -13.86211 -13.37878 -13.15637 -12.91255 -12.70231 -12.49437 -12.30666 -12.16446 -12.11914 -11.94621 -11.70208 -11.56519 -11.26335 -11.09412 -10.71822 -10.40366 -9.77515 -9.62752 -9.57783 -8.31265 -6.01551 0.07962 0.25484 0.62200 1.36189 1.39745 1.47942 1.89592 2.24016 2.56234 2.86425 2.94669 3.14928 3.46816 3.59449 3.77865 3.87473 4.04957 4.15673 4.19054 4.28163 4.32212 4.44351 4.54575 4.71947 4.73913 4.88905 5.09273 5.15769 5.29006 5.32483 5.40473 5.44274 5.47413 5.78592 6.09335 6.43341 6.55274 7.14665 7.41622 7.96704 8.71880 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.005291 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.840309 B = 5290.743813 C = 6287.684454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.021 3.979 3 Si 0.974 3.026 4 H -0.280 1.280 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.351 4.351 8 H 0.064 0.936 9 N -0.416 5.416 10 C 0.420 3.580 11 O -0.624 6.624 12 C 0.149 3.851 13 H 0.133 0.867 14 O -0.544 6.544 15 C -0.109 4.109 16 C -0.106 4.106 17 C -0.109 4.109 18 C -0.090 4.090 19 C -0.098 4.098 20 Br -0.042 7.042 21 C -0.080 4.080 22 C 0.105 3.895 23 C -0.146 4.146 24 C -0.196 4.196 25 H 0.273 0.727 26 H 0.385 0.615 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 -9.257 1.367 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.184 4.184 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.479 4.479 8 H 0.082 0.918 9 N -0.134 5.134 10 C 0.209 3.791 11 O -0.511 6.511 12 C 0.087 3.913 13 H 0.151 0.849 14 O -0.350 6.350 15 C -0.111 4.111 16 C -0.124 4.124 17 C -0.128 4.128 18 C -0.110 4.110 19 C -0.178 4.178 20 Br 0.043 6.957 21 C -0.099 4.099 22 C 0.000 4.000 23 C -0.183 4.183 24 C -0.234 4.234 25 H 0.083 0.917 26 H 0.235 0.765 27 H 0.146 0.854 28 H 0.179 0.821 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.146 0.854 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.516 -9.168 2.093 15.655 hybrid contribution 1.095 1.345 -0.944 1.975 sum -11.421 -7.823 1.149 13.891 Atomic orbital electron populations 1.69911 1.06426 1.28626 1.45868 1.25885 0.96200 1.01485 0.94865 0.85299 0.78252 0.77837 0.78822 1.20622 1.19456 1.19244 1.19345 0.92536 0.84107 1.51878 0.91816 1.43203 1.24675 1.06168 1.39305 1.21483 0.87046 0.87240 0.83354 1.90484 1.33377 1.87050 1.40218 1.20593 0.86341 0.84350 1.00065 0.84928 1.86492 1.73026 1.45693 1.29763 1.20160 0.94289 1.01615 0.95007 1.21278 0.99404 0.97895 0.93831 1.21400 0.90796 0.99080 1.01490 1.21432 1.00498 0.97560 0.91505 1.21852 0.92078 1.08317 0.95505 1.96675 1.31626 1.96707 1.70646 1.21137 0.90161 0.97562 1.01063 1.21285 0.89012 1.04841 0.84847 1.22713 1.02191 0.93383 1.00043 1.23729 1.03888 0.95047 1.00722 0.91737 0.76481 0.85448 0.82119 0.82628 0.83937 0.88249 0.90988 0.88258 0.85400 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.64 11.12 21.66 0.24 -44.39 16 2 C 0.02 1.07 4.75 84.93 0.40 1.47 16 3 Si 0.97 41.87 29.57 68.60 2.03 43.90 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.35 -19.55 8.61 84.04 0.72 -18.83 16 8 H 0.06 3.84 7.61 -2.91 -0.02 3.81 16 9 N -0.42 -20.85 2.90 -613.13 -1.78 -22.63 16 10 C 0.42 20.51 6.83 87.66 0.60 21.11 16 11 O -0.62 -35.20 16.12 15.66 0.25 -34.94 16 12 C 0.15 5.62 2.92 29.10 0.09 5.71 16 13 H 0.13 4.60 5.41 -2.39 -0.01 4.58 16 14 O -0.54 -19.79 12.96 -130.25 -1.69 -21.48 16 15 C -0.11 -3.64 4.51 -19.87 -0.09 -3.73 16 16 C -0.11 -3.23 9.22 22.27 0.21 -3.03 16 17 C -0.11 -2.72 10.05 22.27 0.22 -2.49 16 18 C -0.09 -2.20 9.79 22.29 0.22 -1.98 16 19 C -0.10 -2.66 6.22 22.31 0.14 -2.53 16 20 Br -0.04 -0.98 33.70 -20.37 -0.69 -1.67 16 21 C -0.08 -2.39 7.07 22.29 0.16 -2.24 16 22 C 0.10 4.37 2.13 44.99 0.10 4.47 16 23 C -0.15 -5.61 8.78 30.59 0.27 -5.35 16 24 C -0.20 -6.36 7.54 30.59 0.23 -6.12 16 25 H 0.27 13.26 8.32 -92.71 -0.77 12.49 16 26 H 0.39 12.58 7.37 -74.06 -0.55 12.03 16 27 H 0.13 3.78 7.06 -2.91 -0.02 3.76 16 28 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 29 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.14 3.96 5.45 -2.91 -0.02 3.95 16 31 H 0.10 4.38 6.61 -2.39 -0.02 4.36 16 32 H 0.07 3.08 7.90 -2.39 -0.02 3.06 16 33 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.13 3.20 7.14 -2.38 -0.02 3.18 16 35 H 0.09 2.94 7.59 -2.39 -0.02 2.93 16 Total: -1.00 -65.94 310.84 2.23 -63.72 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.60 Total: 31.02 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 3.26 Total: -13.52 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -1.54 Total: -67.02 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -1.44 Total: -56.43 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -0.69 Total: -1.67 kcal Total: -65.94 2.23 -63.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.422 kcal (2) G-P(sol) polarization free energy of solvation -65.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds