Wall clock time and date at job start Tue Mar 31 2020 22:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86793 * 119.99926 * 2 1 4 4 H 1.48508 * 109.47109 * 239.99769 * 3 2 1 5 5 H 1.48504 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47415 * 120.00057 * 3 2 1 7 7 C 1.38697 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99460 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00146 * 0.02562 * 7 2 1 10 10 C 1.35527 * 116.99787 * 185.05926 * 9 7 2 11 11 C 1.38829 * 120.16111 * 354.40394 * 10 9 7 12 12 C 1.38034 * 120.06869 * 180.29655 * 11 10 9 13 13 C 1.38569 * 120.39900 * 359.67653 * 12 11 10 14 14 C 1.37826 * 120.32964 * 359.97438 * 13 12 11 15 15 C 1.39669 * 119.91351 * 0.02562 * 14 13 12 16 16 C 1.47538 * 120.19356 * 180.02562 * 15 14 13 17 17 O 1.21593 * 119.99734 * 180.02562 * 16 15 14 18 18 N 1.34774 * 120.00187 * 0.27136 * 16 15 14 19 19 C 1.46491 * 120.00313 * 179.73222 * 18 16 15 20 20 C 1.53004 * 109.47550 * 179.97438 * 19 18 16 21 21 Br 1.96604 * 115.54727 * 34.41347 * 20 19 18 22 22 C 1.52993 * 117.49926 * 248.74384 * 20 19 18 23 23 C 1.53001 * 117.50258 * 180.08289 * 20 19 18 24 24 H 0.96997 * 119.99354 * 0.02562 * 1 2 3 25 25 H 1.07994 * 119.96793 * 359.97430 * 11 10 9 26 26 H 1.07995 * 119.79755 * 179.69619 * 12 11 10 27 27 H 1.07998 * 119.83458 * 180.02562 * 13 12 11 28 28 H 1.07996 * 120.04411 * 180.02562 * 14 13 12 29 29 H 0.97000 * 119.99889 * 359.72475 * 18 16 15 30 30 H 1.09009 * 109.46851 * 299.99847 * 19 18 16 31 31 H 1.08998 * 109.48011 * 59.99394 * 19 18 16 32 32 H 1.09001 * 117.49720 * 359.97438 * 22 20 19 33 33 H 1.09004 * 117.50008 * 145.01955 * 22 20 19 34 34 H 1.08996 * 117.49650 * 214.98117 * 23 20 19 35 35 H 1.09003 * 117.49244 * 359.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5029 0.1076 11 6 3.4554 -3.4402 0.0941 12 6 4.2011 -4.5972 0.1971 13 6 3.5742 -5.8267 0.3211 14 6 2.1985 -5.9074 0.3435 15 6 1.4309 -4.7451 0.2403 16 6 -0.0422 -4.8243 0.2641 17 8 -0.7070 -3.8103 0.1735 18 7 -0.6509 -6.0200 0.3913 19 6 -2.1134 -6.0980 0.4209 20 6 -2.5434 -7.5587 0.5710 21 35 -1.3625 -8.6815 1.6711 22 6 -3.2329 -8.2186 -0.6248 23 6 -4.0442 -7.8519 0.6203 24 1 -0.4849 0.8401 -0.0004 25 1 3.9513 -2.4857 -0.0022 26 1 5.2796 -4.5437 0.1812 27 1 4.1666 -6.7262 0.4015 28 1 1.7147 -6.8680 0.4408 29 1 -0.1205 -6.8290 0.4632 30 1 -2.4911 -5.5193 1.2639 31 1 -2.5178 -5.6942 -0.5072 32 1 -3.3806 -7.6119 -1.5183 33 1 -3.0321 -9.2753 -0.8014 34 1 -4.3768 -8.6675 1.2624 35 1 -4.7253 -7.0041 0.5463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910196962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:41 Heat of formation + Delta-G solvation = -1.022928 kcal Electronic energy + Delta-G solvation = -20818.937782 eV Core-core repulsion = 17444.306178 eV Total energy + Delta-G solvation = -3374.631604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.62189 -38.47084 -37.39233 -36.30349 -33.68817 -32.31912 -30.62498 -30.20414 -28.90166 -26.95743 -25.31157 -22.95828 -22.77669 -21.39985 -20.41351 -19.76609 -18.02838 -17.57760 -16.33488 -16.11602 -15.14886 -14.80360 -14.58174 -14.40642 -14.10834 -13.92034 -13.69417 -13.60479 -12.70812 -12.58619 -12.45827 -12.02669 -11.73238 -11.69573 -11.42456 -11.28171 -11.10616 -11.00440 -10.86446 -10.77100 -10.46486 -10.10115 -9.75794 -9.55808 -8.86327 -8.84496 -8.56755 -8.24458 -7.28893 -6.42770 -4.02700 1.31551 1.73849 2.34547 3.12781 3.12957 3.14989 3.17250 3.65235 3.76865 3.95069 4.30447 4.36085 4.46137 4.66465 5.08671 5.19684 5.21833 5.26381 5.47048 5.51127 5.56530 5.65570 5.71258 5.73823 5.85677 6.10434 6.14616 6.59024 6.70853 6.89345 6.93946 7.08717 7.25793 7.30978 7.71756 7.93569 8.11471 8.96755 9.09258 9.69466 10.71070 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.003451 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.408627 B = 8111.948378 C = 9368.328657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.404 4.404 8 H 0.093 0.907 9 O -0.124 6.124 10 C 0.190 3.810 11 C -0.238 4.238 12 C -0.050 4.050 13 C -0.230 4.230 14 C -0.037 4.037 15 C -0.226 4.226 16 C 0.556 3.444 17 O -0.502 6.502 18 N -0.743 5.743 19 C 0.167 3.833 20 C -0.114 4.114 21 Br -0.106 7.106 22 C -0.151 4.151 23 C -0.146 4.146 24 H 0.271 0.729 25 H 0.132 0.868 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.395 0.605 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.819 -18.035 1.211 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.111 0.889 9 O -0.022 6.022 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.249 4.249 14 C -0.056 4.056 15 C -0.231 4.231 16 C 0.345 3.655 17 O -0.376 6.376 18 N -0.402 5.402 19 C 0.041 3.959 20 C -0.191 4.191 21 Br -0.025 7.025 22 C -0.189 4.189 23 C -0.184 4.184 24 H 0.082 0.918 25 H 0.149 0.851 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.233 0.767 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.387 -17.384 1.501 17.992 hybrid contribution 0.665 0.483 -0.118 0.831 sum -3.722 -16.901 1.383 17.361 Atomic orbital electron populations 1.70125 1.05963 1.27782 1.42625 1.25377 0.95799 0.98924 0.96182 0.85800 0.78785 0.79688 0.79252 1.19384 1.20172 1.19369 1.21451 0.91871 0.81158 1.53518 0.88933 1.84173 1.33498 1.10944 1.73592 1.19264 0.89863 0.87373 0.90478 1.21152 0.93363 0.99314 1.11884 1.20898 0.98633 0.92296 0.95075 1.20460 0.94018 0.97141 1.13286 1.20774 0.93896 0.95538 0.95405 1.18811 0.91802 0.92183 1.20317 1.18230 0.87923 0.82608 0.76718 1.90947 1.65789 1.33786 1.47071 1.46060 1.05663 1.09841 1.78610 1.20729 0.82501 0.89505 1.03139 1.25241 0.95152 0.95886 1.02838 1.97341 1.66902 1.67637 1.70620 1.23479 1.00700 1.02181 0.92520 1.23349 0.90323 1.04225 1.00530 0.91849 0.85063 0.87165 0.87258 0.87148 0.76733 0.90431 0.90098 0.86990 0.87436 0.87277 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.19 13.67 55.48 0.76 -24.43 16 2 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 3 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 7 C -0.40 -11.50 9.49 30.90 0.29 -11.21 16 8 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 9 O -0.12 -3.68 7.84 -21.07 -0.17 -3.85 16 10 C 0.19 4.78 6.66 -38.60 -0.26 4.52 16 11 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 12 C -0.05 -0.90 10.03 -39.53 -0.40 -1.30 16 13 C -0.23 -3.89 10.02 -39.61 -0.40 -4.28 16 14 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 15 C -0.23 -5.05 5.89 -104.81 -0.62 -5.66 16 16 C 0.56 12.47 7.76 -12.47 -0.10 12.37 16 17 O -0.50 -13.78 15.17 -16.57 -0.25 -14.03 16 18 N -0.74 -12.58 5.28 -61.35 -0.32 -12.91 16 19 C 0.17 2.39 5.85 -4.04 -0.02 2.37 16 20 C -0.11 -1.21 2.90 -90.62 -0.26 -1.48 16 21 Br -0.11 -1.18 32.08 -68.01 -2.18 -3.36 16 22 C -0.15 -1.24 10.00 -26.70 -0.27 -1.50 16 23 C -0.15 -1.16 10.07 -26.69 -0.27 -1.43 16 24 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 26 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.11 1.62 6.40 -52.49 -0.34 1.29 16 29 H 0.40 5.86 4.87 -40.82 -0.20 5.66 16 30 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 31 H 0.08 1.17 7.90 -51.93 -0.41 0.76 16 32 H 0.11 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -34.11 322.82 -9.05 -43.16 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.60 Total: 8.02 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -3.12 Total: -13.02 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.43 Total: -37.34 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.42 Total: -17.88 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 35 Polarization: -1.18 SS G_CDS: -2.18 Total: -3.36 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.11 -9.05 -43.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910196962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.141 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds