Wall clock time and date at job start Tue Mar 31 2020 22:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86793 * 119.99926 * 2 1 4 4 H 1.48508 * 109.47109 * 239.99769 * 3 2 1 5 5 H 1.48504 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47415 * 120.00057 * 3 2 1 7 7 C 1.38697 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99460 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00146 * 0.02562 * 7 2 1 10 10 C 1.35527 * 116.99787 * 185.05926 * 9 7 2 11 11 C 1.38829 * 120.16111 * 354.40394 * 10 9 7 12 12 C 1.38034 * 120.06869 * 180.29655 * 11 10 9 13 13 C 1.38569 * 120.39900 * 359.67653 * 12 11 10 14 14 C 1.37826 * 120.32964 * 359.97438 * 13 12 11 15 15 C 1.39669 * 119.91351 * 0.02562 * 14 13 12 16 16 C 1.47538 * 120.19356 * 180.02562 * 15 14 13 17 17 O 1.21593 * 119.99734 * 180.02562 * 16 15 14 18 18 N 1.34774 * 120.00187 * 0.27136 * 16 15 14 19 19 C 1.46491 * 120.00313 * 179.73222 * 18 16 15 20 20 C 1.53004 * 109.47550 * 179.97438 * 19 18 16 21 21 Br 1.96604 * 115.54727 * 34.41347 * 20 19 18 22 22 C 1.52993 * 117.49926 * 248.74384 * 20 19 18 23 23 C 1.53001 * 117.50258 * 180.08289 * 20 19 18 24 24 H 0.96997 * 119.99354 * 0.02562 * 1 2 3 25 25 H 1.07994 * 119.96793 * 359.97430 * 11 10 9 26 26 H 1.07995 * 119.79755 * 179.69619 * 12 11 10 27 27 H 1.07998 * 119.83458 * 180.02562 * 13 12 11 28 28 H 1.07996 * 120.04411 * 180.02562 * 14 13 12 29 29 H 0.97000 * 119.99889 * 359.72475 * 18 16 15 30 30 H 1.09009 * 109.46851 * 299.99847 * 19 18 16 31 31 H 1.08998 * 109.48011 * 59.99394 * 19 18 16 32 32 H 1.09001 * 117.49720 * 359.97438 * 22 20 19 33 33 H 1.09004 * 117.50008 * 145.01955 * 22 20 19 34 34 H 1.08996 * 117.49650 * 214.98117 * 23 20 19 35 35 H 1.09003 * 117.49244 * 359.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5029 0.1076 11 6 3.4554 -3.4402 0.0941 12 6 4.2011 -4.5972 0.1971 13 6 3.5742 -5.8267 0.3211 14 6 2.1985 -5.9074 0.3435 15 6 1.4309 -4.7451 0.2403 16 6 -0.0422 -4.8243 0.2641 17 8 -0.7070 -3.8103 0.1735 18 7 -0.6509 -6.0200 0.3913 19 6 -2.1134 -6.0980 0.4209 20 6 -2.5434 -7.5587 0.5710 21 35 -1.3625 -8.6815 1.6711 22 6 -3.2329 -8.2186 -0.6248 23 6 -4.0442 -7.8519 0.6203 24 1 -0.4849 0.8401 -0.0004 25 1 3.9513 -2.4857 -0.0022 26 1 5.2796 -4.5437 0.1812 27 1 4.1666 -6.7262 0.4015 28 1 1.7147 -6.8680 0.4408 29 1 -0.1205 -6.8290 0.4632 30 1 -2.4911 -5.5193 1.2639 31 1 -2.5178 -5.6942 -0.5072 32 1 -3.3806 -7.6119 -1.5183 33 1 -3.0321 -9.2753 -0.8014 34 1 -4.3768 -8.6675 1.2624 35 1 -4.7253 -7.0041 0.5463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910196962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:40 Heat of formation + Delta-G solvation = -23.314366 kcal Electronic energy + Delta-G solvation = -20819.904412 eV Core-core repulsion = 17444.306178 eV Total energy + Delta-G solvation = -3375.598234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32032 -39.98392 -38.57503 -38.02320 -35.22450 -34.31320 -32.20208 -31.07795 -30.58394 -28.31207 -27.26592 -24.47600 -23.51011 -23.07044 -21.68913 -21.14597 -19.85505 -19.20200 -17.88966 -17.46701 -16.58596 -16.36285 -16.16024 -15.95520 -15.63421 -15.32799 -15.29462 -15.02528 -14.35985 -14.17775 -14.13442 -13.54469 -12.99115 -12.74237 -12.70199 -12.64095 -12.50828 -12.35924 -12.22918 -12.14375 -11.83209 -11.43410 -10.96942 -10.81733 -10.66671 -10.60043 -10.13761 -9.80535 -9.04890 -8.43893 -6.14968 0.10144 0.45391 0.71358 1.33285 1.46197 1.51100 2.06097 2.10816 2.16971 2.54939 2.87598 3.21503 3.36827 3.45422 3.49655 3.74861 3.95934 4.06015 4.27796 4.44892 4.49035 4.52214 4.58116 4.64660 4.68523 4.89357 4.96484 5.07035 5.10427 5.12418 5.42064 5.47222 5.59582 5.68181 5.96304 6.15197 6.58611 6.95154 7.40972 7.80134 8.76379 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.003451 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.408627 B = 8111.948378 C = 9368.328657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.021 4.021 3 Si 1.022 2.978 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.430 4.430 8 H 0.107 0.893 9 O -0.187 6.187 10 C 0.151 3.849 11 C -0.255 4.255 12 C -0.038 4.038 13 C -0.200 4.200 14 C -0.032 4.032 15 C -0.246 4.246 16 C 0.549 3.451 17 O -0.565 6.565 18 N -0.720 5.720 19 C 0.164 3.836 20 C -0.134 4.134 21 Br -0.108 7.108 22 C -0.135 4.135 23 C -0.130 4.130 24 H 0.271 0.729 25 H 0.126 0.874 26 H 0.156 0.844 27 H 0.163 0.837 28 H 0.149 0.851 29 H 0.408 0.592 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -21.422 1.316 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.505 4.505 8 H 0.125 0.875 9 O -0.089 6.089 10 C 0.096 3.904 11 C -0.275 4.275 12 C -0.056 4.056 13 C -0.218 4.218 14 C -0.051 4.051 15 C -0.251 4.251 16 C 0.339 3.661 17 O -0.444 6.444 18 N -0.377 5.377 19 C 0.039 3.961 20 C -0.211 4.211 21 Br -0.026 7.026 22 C -0.173 4.173 23 C -0.168 4.168 24 H 0.080 0.920 25 H 0.144 0.856 26 H 0.174 0.826 27 H 0.181 0.819 28 H 0.166 0.834 29 H 0.247 0.753 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.039 -20.896 1.613 21.057 hybrid contribution 0.087 1.056 -0.117 1.066 sum -1.952 -19.840 1.497 19.992 Atomic orbital electron populations 1.70320 1.08349 1.28653 1.46699 1.26757 0.96744 1.03080 0.95449 0.84623 0.77356 0.73854 0.80134 1.17747 1.19780 1.17879 1.22018 0.92747 0.81798 1.53969 0.87537 1.84176 1.35130 1.12116 1.77517 1.20040 0.91690 0.87455 0.91264 1.21318 0.92234 1.01016 1.12896 1.21440 1.00795 0.91115 0.92248 1.21155 0.93702 0.98611 1.08350 1.21221 0.94671 0.95337 0.93845 1.19251 0.92302 0.92950 1.20565 1.18515 0.88340 0.83158 0.76041 1.90926 1.67035 1.36251 1.50181 1.45866 1.07037 1.08507 1.76306 1.20789 0.80648 0.92454 1.02226 1.25062 0.96873 0.93644 1.05519 1.97330 1.67227 1.67188 1.70903 1.23602 0.98796 1.02837 0.92063 1.23502 0.88266 1.04715 1.00307 0.92010 0.85623 0.82600 0.81905 0.83385 0.75255 0.92187 0.90633 0.86664 0.85759 0.85637 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -59.17 13.67 21.62 0.30 -58.88 16 2 C -0.02 -1.25 5.49 84.85 0.47 -0.78 16 3 Si 1.02 44.19 29.55 68.60 2.03 46.22 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.43 -26.09 9.49 67.93 0.64 -25.44 16 8 H 0.11 5.78 5.21 -2.91 -0.02 5.76 16 9 O -0.19 -11.99 7.84 0.80 0.01 -11.98 16 10 C 0.15 7.90 6.66 22.91 0.15 8.05 16 11 C -0.26 -11.02 9.16 22.36 0.20 -10.82 16 12 C -0.04 -1.20 10.03 22.30 0.22 -0.98 16 13 C -0.20 -5.61 10.02 22.25 0.22 -5.39 16 14 C -0.03 -1.05 9.54 22.52 0.21 -0.83 16 15 C -0.25 -11.08 5.89 -19.99 -0.12 -11.20 16 16 C 0.55 25.75 7.76 86.70 0.67 26.42 16 17 O -0.56 -33.60 15.17 16.89 0.26 -33.34 16 18 N -0.72 -24.45 5.28 -466.27 -2.46 -26.91 16 19 C 0.16 4.79 5.85 86.38 0.51 5.30 16 20 C -0.13 -2.65 2.90 -10.79 -0.03 -2.69 16 21 Br -0.11 -2.15 32.08 -20.37 -0.65 -2.81 16 22 C -0.14 -1.89 10.00 30.62 0.31 -1.58 16 23 C -0.13 -1.79 10.07 30.62 0.31 -1.48 16 24 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 25 H 0.13 5.44 5.64 -2.91 -0.02 5.43 16 26 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.15 3.65 6.40 -2.91 -0.02 3.63 16 29 H 0.41 11.41 4.87 -92.71 -0.45 10.96 16 30 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.08 2.29 7.90 -2.39 -0.02 2.28 16 32 H 0.12 1.57 8.05 -2.39 -0.02 1.55 16 33 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -84.92 322.82 3.93 -80.99 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.69 Total: 28.12 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 3.77 Total: -21.41 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.17 Total: -85.78 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: 0.26 Total: -45.33 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 35 Polarization: -2.15 SS G_CDS: -0.65 Total: -2.81 kcal Total: -84.92 3.93 -80.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910196962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.671 kcal (2) G-P(sol) polarization free energy of solvation -84.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds