Wall clock time and date at job start Tue Mar 31 2020 22:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35810 * 119.41466 * 2 1 4 4 C 1.35289 * 120.98463 * 179.70899 * 3 2 1 5 5 Br 1.89102 * 120.09225 * 180.28055 * 4 3 2 6 6 C 1.41329 * 119.81627 * 0.56283 * 4 3 2 7 7 C 1.48146 * 120.55391 * 179.73872 * 6 4 3 8 8 O 1.21557 * 119.99845 * 76.57098 * 7 6 4 9 9 N 1.34772 * 120.00036 * 256.57261 * 7 6 4 10 10 C 1.36548 * 120.00240 * 3.76709 * 9 7 6 11 11 H 1.08001 * 119.99854 * 17.33336 * 10 9 7 12 12 C 1.39274 * 120.00478 * 197.33316 * 10 9 7 13 13 N 1.31221 * 119.99806 * 14.47062 * 12 10 9 14 14 Si 1.86803 * 120.00335 * 194.47414 * 12 10 9 15 15 H 1.48500 * 109.46976 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47048 * 120.00015 * 14 12 10 17 17 H 1.48501 * 109.46967 * 239.99900 * 14 12 10 18 18 C 1.46499 * 119.99981 * 183.77529 * 9 7 6 19 19 C 1.47200 * 109.47529 * 83.52495 * 18 9 7 20 20 N 7.62785 * 159.42586 * 187.69667 * 2 1 3 21 21 C 1.38553 * 118.88741 * 359.46836 * 6 4 3 22 22 C 1.34583 * 119.42087 * 180.02562 * 2 1 3 23 23 O 1.22046 * 119.93622 * 0.02562 * 22 2 1 24 24 H 1.09005 * 109.47313 * 269.98211 * 1 2 3 25 25 H 1.09002 * 109.47264 * 29.98027 * 1 2 3 26 26 H 1.08997 * 109.47129 * 149.98390 * 1 2 3 27 27 H 1.07992 * 119.51290 * 359.97438 * 3 2 1 28 28 H 0.97002 * 120.00056 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.47298 * 203.53427 * 18 9 7 30 30 H 1.09004 * 109.47068 * 323.52601 * 18 9 7 31 31 H 1.07998 * 120.48558 * 180.22845 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1830 0.0000 4 6 3.4844 1.2201 0.0059 5 35 4.3873 2.8816 0.0138 6 6 4.2204 0.0136 0.0001 7 6 5.7017 0.0352 0.0006 8 8 6.3056 0.2834 1.0260 9 7 6.3798 -0.2204 -1.1357 10 6 5.7026 -0.4232 -2.3040 11 1 4.6723 -0.1114 -2.3921 12 6 6.3404 -1.0321 -3.3820 13 7 7.4770 -1.6624 -3.2012 14 14 5.5778 -0.9516 -5.0854 15 1 4.3051 -0.1891 -5.0225 16 1 6.5159 -0.2741 -6.0161 17 1 5.3061 -2.3282 -5.5717 18 6 7.8434 -0.2807 -1.1176 19 6 8.2740 -1.6216 -0.6894 20 7 8.6063 -2.6564 -0.3590 21 6 3.5335 -1.1896 -0.0003 22 6 2.1261 -1.1723 -0.0005 23 8 1.5040 -2.2223 -0.0015 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.5746 2.1080 -0.0004 28 1 7.9214 -2.0862 -3.9520 29 1 8.2279 -0.0775 -2.1171 30 1 8.2292 0.4643 -0.4216 31 1 4.0700 -2.1268 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298242.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:59 Heat of formation + Delta-G solvation = -0.655559 kcal Electronic energy + Delta-G solvation = -21303.486823 eV Core-core repulsion = 17825.330806 eV Total energy + Delta-G solvation = -3478.156018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.48637 -40.69587 -38.18658 -37.53169 -36.41354 -35.65222 -33.57042 -32.65100 -30.27363 -29.69684 -28.43105 -26.76693 -25.21146 -24.03149 -21.42488 -20.04675 -18.89721 -18.70697 -18.06669 -17.91588 -17.16924 -16.92014 -16.41028 -16.08532 -15.45921 -15.22770 -14.94703 -14.64685 -14.26181 -14.12541 -13.89582 -13.63745 -13.38617 -13.38018 -13.15637 -12.98721 -12.96066 -12.52968 -12.17808 -12.02769 -11.57906 -11.56034 -11.28407 -11.18119 -10.87245 -10.54050 -10.04441 -9.06467 -8.40828 -6.01328 -0.46171 0.40678 0.51129 1.34487 1.50299 1.60183 1.61857 1.73345 1.87866 2.22830 2.31976 2.35517 2.86189 3.00859 3.48478 3.54488 3.64629 3.85574 4.03959 4.30050 4.48050 4.51771 4.57417 4.72613 4.83700 4.92704 4.93944 5.25400 5.38004 5.55078 5.77187 6.27527 6.75263 6.94388 6.97938 7.28931 7.69554 8.61647 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.006308 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.037676 B = 4437.406618 C = 5086.831560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.485 5.485 3 C 0.203 3.797 4 C -0.203 4.203 5 Br -0.005 7.005 6 C 0.042 3.958 7 C 0.487 3.513 8 O -0.598 6.598 9 N -0.425 5.425 10 C -0.342 4.342 11 H 0.106 0.894 12 C 0.008 3.992 13 N -0.892 5.892 14 Si 0.984 3.016 15 H -0.256 1.256 16 H -0.267 1.267 17 H -0.294 1.294 18 C 0.228 3.772 19 C 0.266 3.734 20 N -0.516 5.516 21 C -0.231 4.231 22 C 0.518 3.482 23 O -0.583 6.583 24 H 0.097 0.903 25 H 0.136 0.864 26 H 0.081 0.919 27 H 0.234 0.766 28 H 0.277 0.723 29 H 0.143 0.857 30 H 0.110 0.890 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 15.150 0.686 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.194 5.194 3 C 0.071 3.929 4 C -0.288 4.288 5 Br 0.079 6.921 6 C 0.034 3.966 7 C 0.276 3.724 8 O -0.485 6.485 9 N -0.142 5.142 10 C -0.469 4.469 11 H 0.124 0.876 12 C -0.195 4.195 13 N -0.530 5.530 14 Si 0.808 3.192 15 H -0.180 1.180 16 H -0.192 1.192 17 H -0.221 1.221 18 C 0.102 3.898 19 C -0.052 4.052 20 N -0.197 5.197 21 C -0.254 4.254 22 C 0.321 3.679 23 O -0.469 6.469 24 H 0.115 0.885 25 H 0.154 0.846 26 H 0.100 0.900 27 H 0.250 0.750 28 H 0.087 0.913 29 H 0.160 0.840 30 H 0.128 0.872 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.533 13.574 1.529 18.539 hybrid contribution 0.013 -0.836 -0.994 1.299 sum -12.520 12.739 0.535 17.870 Atomic orbital electron populations 1.22634 0.73435 1.06920 1.05885 1.45511 1.11359 1.05413 1.57104 1.22483 0.90815 0.91130 0.88438 1.21010 0.94321 0.92356 1.21064 1.96692 1.78090 1.19158 1.98157 1.20224 0.94019 0.93134 0.89188 1.18346 0.87061 0.83568 0.83436 1.90686 1.69343 1.55804 1.32649 1.43535 1.04289 1.59039 1.07323 1.19824 0.98712 1.39898 0.88442 0.87641 1.25993 0.96538 0.93645 1.03318 1.69858 1.18189 1.31579 1.33336 0.84980 0.79138 0.77509 0.77528 1.17971 1.19199 1.22082 1.18916 0.81490 0.84859 1.04493 1.29741 0.91472 0.95379 0.88577 1.80859 1.10830 1.12990 1.14975 1.22192 0.93139 0.98074 1.12015 1.16789 0.88284 0.83607 0.79190 1.90909 1.69812 1.31171 1.54958 0.88471 0.84602 0.90015 0.75023 0.91282 0.83961 0.87238 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 10.34 127.77 1.32 1.97 16 2 N -0.49 -11.24 2.98 -674.41 -2.01 -13.26 16 3 C 0.20 3.97 9.97 83.40 0.83 4.80 16 4 C -0.20 -5.89 6.22 22.35 0.14 -5.75 16 5 Br 0.00 -0.13 32.71 -20.37 -0.67 -0.80 16 6 C 0.04 1.64 3.93 -19.81 -0.08 1.56 16 7 C 0.49 21.77 5.98 86.88 0.52 22.29 16 8 O -0.60 -29.14 16.77 -3.90 -0.07 -29.20 16 9 N -0.42 -19.19 2.59 -648.45 -1.68 -20.87 16 10 C -0.34 -15.42 9.05 84.21 0.76 -14.66 16 11 H 0.11 4.64 6.84 -2.91 -0.02 4.62 16 12 C 0.01 0.38 5.06 85.03 0.43 0.81 16 13 N -0.89 -42.69 9.10 21.72 0.20 -42.49 16 14 Si 0.98 36.69 29.58 68.60 2.03 38.72 16 15 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 16 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 17 H -0.29 -11.62 7.11 99.48 0.71 -10.92 16 18 C 0.23 9.82 5.08 84.57 0.43 10.25 16 19 C 0.27 12.92 13.78 89.44 1.23 14.15 16 20 N -0.52 -26.88 18.54 20.01 0.37 -26.51 16 21 C -0.23 -9.28 9.64 22.96 0.22 -9.06 16 22 C 0.52 18.23 7.41 84.89 0.63 18.86 16 23 O -0.58 -23.89 16.61 -5.47 -0.09 -23.98 16 24 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.14 0.48 8.00 -2.39 -0.02 0.46 16 26 H 0.08 1.40 7.37 -2.39 -0.02 1.38 16 27 H 0.23 1.71 8.02 -2.91 -0.02 1.68 16 28 H 0.28 12.83 8.30 -92.71 -0.77 12.06 16 29 H 0.14 5.97 6.14 -2.39 -0.01 5.95 16 30 H 0.11 4.22 7.57 -2.39 -0.02 4.21 16 31 H 0.13 5.69 8.06 -2.91 -0.02 5.67 16 Total: -1.00 -69.99 305.12 5.72 -64.28 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.20 Total: 8.89 kcal Atomic # 6 Polarization: 38.79 SS G_CDS: 6.44 Total: 45.23 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -3.12 Total: -103.13 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.16 Total: -53.18 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.67 Total: -0.80 kcal Total: -69.99 5.72 -64.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298242.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.623 kcal (2) G-P(sol) polarization free energy of solvation -69.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds