Wall clock time and date at job start Tue Mar 31 2020 21:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47310 * 2 1 4 4 H 1.08996 * 109.47435 * 54.57796 * 3 2 1 5 5 C 1.50701 * 109.47305 * 174.58260 * 3 2 1 6 6 O 1.21288 * 120.00057 * 111.43004 * 5 3 2 7 7 N 1.34777 * 119.99735 * 291.43194 * 5 3 2 8 8 C 1.47077 * 120.87619 * 176.29180 * 7 5 3 9 9 C 1.53241 * 108.51929 * 231.20073 * 8 7 5 10 10 N 1.46894 * 109.34057 * 306.17260 * 9 8 7 11 11 C 1.46905 * 111.00227 * 187.24981 * 10 9 8 12 12 H 1.09005 * 110.88590 * 303.88428 * 11 10 9 13 13 C 1.55157 * 111.00664 * 179.97438 * 11 10 9 14 14 C 1.54321 * 102.94264 * 206.42560 * 13 11 10 15 15 N 1.47026 * 107.27122 * 22.19324 * 14 13 11 16 16 C 1.36927 * 125.64443 * 181.02274 * 15 14 13 17 17 H 1.08007 * 119.99800 * 185.39394 * 16 15 14 18 18 C 1.38806 * 120.00744 * 5.39278 * 16 15 14 19 19 N 1.31622 * 119.99496 * 6.02048 * 18 16 15 20 20 Si 1.86801 * 120.00416 * 186.01938 * 18 16 15 21 21 H 1.48498 * 109.47065 * 84.99864 * 20 18 16 22 22 H 1.48494 * 109.47293 * 324.99618 * 20 18 16 23 23 H 1.48508 * 109.47115 * 204.99606 * 20 18 16 24 24 C 1.47424 * 108.70222 * 1.28632 * 15 14 13 25 25 C 1.46903 * 111.26781 * 63.10443 * 10 9 8 26 26 C 1.47073 * 120.88234 * 356.30522 * 7 5 3 27 27 N 1.46899 * 109.46737 * 294.58036 * 3 2 1 28 28 C 1.46902 * 111.00461 * 321.97117 * 27 3 2 29 29 C 1.46904 * 111.00301 * 85.92560 * 27 3 2 30 30 H 1.08997 * 109.47012 * 312.59349 * 1 2 3 31 31 H 1.08997 * 109.46836 * 72.58980 * 1 2 3 32 32 H 1.08995 * 109.46669 * 192.58760 * 1 2 3 33 33 H 1.09003 * 109.47520 * 239.99472 * 2 1 3 34 34 H 1.09002 * 109.46936 * 119.99861 * 2 1 3 35 35 H 1.09007 * 109.63013 * 111.49720 * 8 7 5 36 36 H 1.08996 * 109.63489 * 350.91339 * 8 7 5 37 37 H 1.09002 * 109.49227 * 186.21163 * 9 8 7 38 38 H 1.09002 * 109.49158 * 66.13177 * 9 8 7 39 39 H 1.09003 * 110.71840 * 88.06013 * 13 11 10 40 40 H 1.08996 * 110.87345 * 324.86185 * 13 11 10 41 41 H 1.09002 * 109.87853 * 262.77991 * 14 13 11 42 42 H 1.08990 * 110.01031 * 141.68554 * 14 13 11 43 43 H 0.97011 * 119.99571 * 180.02562 * 19 18 16 44 44 H 1.09002 * 110.36475 * 94.48206 * 24 15 14 45 45 H 1.08996 * 110.36530 * 216.80501 * 24 15 14 46 46 H 1.08997 * 109.49282 * 56.85625 * 25 10 9 47 47 H 1.09001 * 109.49285 * 176.93720 * 25 10 9 48 48 H 1.08993 * 109.63617 * 248.50762 * 26 7 5 49 49 H 1.08995 * 109.62773 * 9.09185 * 26 7 5 50 50 H 1.08997 * 109.46992 * 59.99463 * 28 27 3 51 51 H 1.08998 * 109.47518 * 180.02562 * 28 27 3 52 52 H 1.09001 * 109.46711 * 300.00357 * 28 27 3 53 53 H 1.09002 * 109.46869 * 66.72930 * 29 27 3 54 54 H 1.08998 * 109.47251 * 186.73565 * 29 27 3 55 55 H 1.09001 * 109.46514 * 306.73796 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9836 0.8374 5 6 3.5411 1.4446 0.1341 6 8 4.2327 1.7983 -0.7974 7 7 4.1149 1.0535 1.2892 8 6 5.5780 0.9706 1.4150 9 6 5.9413 -0.4108 1.9700 10 7 5.1965 -0.6466 3.2139 11 6 5.6429 -1.8838 3.8684 12 1 5.5545 -2.7346 3.1927 13 6 4.8567 -2.1326 5.1827 14 6 5.8423 -2.9737 6.0210 15 7 7.1915 -2.7163 5.4966 16 6 8.3484 -3.2873 5.9555 17 1 9.3017 -2.9675 5.5614 18 6 8.2960 -4.2770 6.9274 19 7 7.1331 -4.7505 7.3223 20 14 9.8757 -4.9369 7.6746 21 1 10.2982 -4.0583 8.7948 22 1 10.9395 -4.9646 6.6389 23 1 9.6453 -6.3126 8.1844 24 6 7.0932 -1.7370 4.3990 25 6 3.7480 -0.6728 2.9709 26 6 3.2948 0.6979 2.4571 27 7 1.6601 2.0961 -1.2595 28 6 1.7675 1.1640 -2.3898 29 6 0.3077 2.6630 -1.1714 30 1 -0.3633 0.6955 0.7565 31 1 -0.3633 0.3075 -0.9806 32 1 -0.3632 -1.0029 0.2240 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9312 1.7438 2.0974 36 1 6.0379 1.1044 0.4359 37 1 7.0114 -0.4511 2.1735 38 1 5.6806 -1.1764 1.2392 39 1 3.9428 -2.6928 4.9852 40 1 4.6299 -1.1916 5.6836 41 1 5.6023 -4.0325 5.9232 42 1 5.7888 -2.6768 7.0683 43 1 7.0965 -5.4420 8.0018 44 1 7.2618 -0.7278 4.7749 45 1 7.8101 -1.9747 3.6132 46 1 3.5178 -1.4348 2.2263 47 1 3.2273 -0.9031 3.9004 48 1 3.4284 1.4448 3.2396 49 1 2.2452 0.6514 2.1669 50 1 1.1059 0.3138 -2.2237 51 1 1.4810 1.6736 -3.3097 52 1 2.7959 0.8128 -2.4746 53 1 0.3038 3.4837 -0.4541 54 1 0.0050 3.0345 -2.1504 55 1 -0.3891 1.8912 -0.8443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046063679.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:15 Heat of formation + Delta-G solvation = 10.639893 kcal Electronic energy + Delta-G solvation = -31406.821917 eV Core-core repulsion = 27479.758363 eV Total energy + Delta-G solvation = -3927.063554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.69257 -40.13934 -38.78967 -37.88619 -35.63146 -33.95121 -33.27786 -32.24349 -30.95956 -29.99229 -28.91641 -28.55907 -27.34617 -25.87808 -24.73745 -23.84308 -23.02631 -21.84663 -21.62907 -21.13094 -19.74325 -18.90132 -18.39767 -17.51460 -17.13905 -16.71501 -16.48838 -16.45345 -16.00318 -15.89237 -15.81987 -15.43547 -15.30471 -14.86233 -14.61281 -14.36764 -13.95348 -13.86379 -13.76181 -13.58797 -13.40826 -13.30043 -13.07806 -12.93676 -12.85852 -12.75307 -12.69939 -12.53824 -12.52530 -12.37464 -12.21709 -12.13699 -11.98289 -11.82812 -11.73650 -11.64391 -11.58938 -11.47176 -10.71670 -10.64049 -9.79477 -9.27008 -9.09360 -8.88605 -7.83328 -5.21574 1.45811 1.48238 1.55977 1.62753 1.88113 2.47943 2.79858 3.04130 3.32996 3.45171 3.64657 3.80155 3.82076 3.90636 3.96282 4.00416 4.13426 4.22483 4.26315 4.29261 4.30126 4.32212 4.41013 4.42433 4.47618 4.54265 4.61556 4.64271 4.74332 4.74751 4.76906 4.79148 4.87638 4.91501 4.96530 5.00054 5.02083 5.05033 5.08087 5.11015 5.16843 5.21769 5.36637 5.43423 5.45766 5.62490 5.79837 5.95330 6.03967 6.10973 6.12980 6.23414 6.46513 7.10441 7.21578 7.77832 8.42178 9.24669 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.002240 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.416379 B =12497.217092 C =13041.227362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.155 4.155 3 C 0.073 3.927 4 H 0.122 0.878 5 C 0.516 3.484 6 O -0.569 6.569 7 N -0.613 5.613 8 C 0.125 3.875 9 C 0.048 3.952 10 N -0.525 5.525 11 C 0.088 3.912 12 H 0.038 0.962 13 C -0.114 4.114 14 C 0.179 3.821 15 N -0.628 5.628 16 C -0.242 4.242 17 H 0.080 0.920 18 C -0.066 4.066 19 N -0.949 5.949 20 Si 0.978 3.022 21 H -0.285 1.285 22 H -0.270 1.270 23 H -0.294 1.294 24 C 0.147 3.853 25 C 0.038 3.962 26 C 0.111 3.889 27 N -0.545 5.545 28 C 0.025 3.975 29 C 0.006 3.994 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.028 0.972 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.025 0.975 42 H -0.003 1.003 43 H 0.247 0.753 44 H 0.032 0.968 45 H 0.032 0.968 46 H 0.036 0.964 47 H 0.104 0.896 48 H 0.087 0.913 49 H 0.117 0.883 50 H 0.048 0.952 51 H 0.072 0.928 52 H 0.046 0.954 53 H 0.071 0.929 54 H 0.072 0.928 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 13.076 -15.392 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.193 4.193 3 C -0.039 4.039 4 H 0.140 0.860 5 C 0.304 3.696 6 O -0.447 6.447 7 N -0.347 5.347 8 C 0.002 3.998 9 C -0.081 4.081 10 N -0.250 5.250 11 C -0.021 4.021 12 H 0.056 0.944 13 C -0.152 4.152 14 C 0.054 3.946 15 N -0.354 5.354 16 C -0.372 4.372 17 H 0.097 0.903 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.806 3.194 21 H -0.212 1.212 22 H -0.195 1.195 23 H -0.220 1.220 24 C 0.021 3.979 25 C -0.090 4.090 26 C -0.011 4.011 27 N -0.268 5.268 28 C -0.123 4.123 29 C -0.140 4.140 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.015 0.985 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.122 0.878 48 H 0.105 0.895 49 H 0.134 0.866 50 H 0.067 0.933 51 H 0.090 0.910 52 H 0.065 0.935 53 H 0.090 0.910 54 H 0.091 0.909 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.807 13.908 -15.549 27.428 hybrid contribution 0.682 -2.032 0.255 2.159 sum -17.125 11.876 -15.294 25.850 Atomic orbital electron populations 1.22041 0.93050 1.03222 1.02678 1.22269 0.98418 0.94946 1.03716 1.21709 0.90606 0.96370 0.95179 0.86030 1.21141 0.91432 0.75710 0.81270 1.90649 1.65598 1.48326 1.40120 1.48281 1.07185 1.66656 1.12607 1.21554 0.80355 0.96480 1.01387 1.22416 0.99435 0.96251 0.89988 1.61920 1.04900 1.34590 1.23589 1.22561 0.95418 0.89639 0.94482 0.94382 1.22726 0.97520 1.00244 0.94702 1.20987 0.83239 0.96622 0.93763 1.44734 1.03644 1.49110 1.37955 1.19413 0.85784 1.14445 1.17515 0.90259 1.25656 1.00153 0.99269 1.00857 1.70175 1.24103 1.31442 1.34049 0.85103 0.78973 0.76873 0.78431 1.21226 1.19496 1.21998 1.21617 0.94527 0.92312 0.89410 1.22602 0.88010 0.96823 1.01609 1.22146 0.95744 0.96002 0.87207 1.61717 1.27518 1.35301 1.02298 1.22455 1.01010 0.95322 0.93524 1.22867 0.87623 1.00212 1.03338 0.90687 0.91753 0.91469 0.91765 0.89911 0.90290 0.90019 0.89695 0.95345 0.90029 0.90111 0.95717 0.98517 0.94377 0.95045 0.94920 0.94617 0.87833 0.89488 0.86556 0.93341 0.90954 0.93495 0.91023 0.90913 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.09 71.98 0.58 -0.59 16 2 C -0.15 -1.89 4.42 30.59 0.14 -1.75 16 3 C 0.07 1.14 1.48 44.17 0.07 1.21 16 4 H 0.12 1.39 7.03 -2.39 -0.02 1.37 16 5 C 0.52 11.89 6.92 87.66 0.61 12.50 16 6 O -0.57 -18.02 14.78 -3.05 -0.05 -18.07 16 7 N -0.61 -12.57 3.01 -817.95 -2.46 -15.03 16 8 C 0.13 2.87 6.59 86.35 0.57 3.44 16 9 C 0.05 1.18 5.52 86.39 0.48 1.66 16 10 N -0.52 -13.41 4.52 -861.42 -3.90 -17.30 16 11 C 0.09 2.91 2.73 46.38 0.13 3.04 16 12 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 13 C -0.11 -3.90 5.04 31.78 0.16 -3.74 16 14 C 0.18 8.76 5.43 86.73 0.47 9.24 16 15 N -0.63 -32.59 3.39 -691.56 -2.35 -34.94 16 16 C -0.24 -13.78 10.27 84.03 0.86 -12.91 16 17 H 0.08 4.33 7.84 -2.91 -0.02 4.31 16 18 C -0.07 -3.80 5.46 84.86 0.46 -3.34 16 19 N -0.95 -57.21 10.42 21.65 0.23 -56.98 16 20 Si 0.98 46.09 29.56 68.60 2.03 48.12 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 24 C 0.15 6.02 5.95 86.93 0.52 6.54 16 25 C 0.04 0.72 5.32 86.38 0.46 1.18 16 26 C 0.11 1.66 5.66 86.35 0.49 2.15 16 27 N -0.54 -9.36 4.49 -927.72 -4.16 -13.53 16 28 C 0.02 0.42 8.10 127.69 1.03 1.45 16 29 C 0.01 0.07 9.18 127.69 1.17 1.24 16 30 H 0.07 0.39 7.71 -2.39 -0.02 0.38 16 31 H 0.06 0.50 4.96 -2.39 -0.01 0.48 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.99 6.06 -2.39 -0.01 0.97 16 34 H 0.08 0.97 5.47 -2.39 -0.01 0.95 16 35 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.08 2.07 7.08 -2.39 -0.02 2.06 16 37 H 0.08 2.20 7.05 -2.39 -0.02 2.18 16 38 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 2.40 7.96 -2.39 -0.02 2.38 16 40 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 41 H 0.02 1.36 6.93 -2.39 -0.02 1.35 16 42 H 0.00 -0.19 7.92 -2.39 -0.02 -0.21 16 43 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 44 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.03 1.33 7.87 -2.39 -0.02 1.31 16 46 H 0.04 0.70 7.81 -2.39 -0.02 0.68 16 47 H 0.10 1.78 6.64 -2.39 -0.02 1.76 16 48 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.12 1.09 4.52 -2.39 -0.01 1.08 16 50 H 0.05 0.65 4.86 -2.39 -0.01 0.63 16 51 H 0.07 1.08 8.05 -2.39 -0.02 1.07 16 52 H 0.05 1.06 7.05 -2.39 -0.02 1.04 16 53 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 54 H 0.07 0.72 8.00 -2.39 -0.02 0.70 16 55 H 0.06 0.46 4.06 -2.39 -0.01 0.45 16 Total: -1.00 -73.22 395.91 -1.60 -74.82 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.87 Total: 11.59 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 8.19 Total: 21.30 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -12.64 Total: -137.77 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.22 -1.60 -74.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046063679.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.464 kcal (2) G-P(sol) polarization free energy of solvation -73.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds