Wall clock time and date at job start Tue Mar 31 2020 21:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47355 * 2 1 4 4 H 1.09006 * 109.47303 * 54.86038 * 3 2 1 5 5 C 1.50696 * 109.47323 * 174.85890 * 3 2 1 6 6 O 1.21285 * 119.99745 * 109.39454 * 5 3 2 7 7 N 1.34773 * 120.00134 * 289.39418 * 5 3 2 8 8 C 1.47086 * 120.87950 * 185.16380 * 7 5 3 9 9 C 1.53239 * 108.52240 * 231.20724 * 8 7 5 10 10 N 1.46901 * 109.33849 * 306.17566 * 9 8 7 11 11 C 1.46901 * 110.99579 * 187.25372 * 10 9 8 12 12 H 1.09003 * 110.64218 * 295.45075 * 11 10 9 13 13 C 1.55158 * 110.72516 * 58.59293 * 11 10 9 14 14 C 1.54907 * 101.58129 * 153.86200 * 13 11 10 15 15 N 1.47420 * 104.83559 * 322.99009 * 14 13 11 16 16 C 1.36933 * 125.65220 * 204.08714 * 15 14 13 17 17 H 1.07995 * 120.00678 * 169.98549 * 16 15 14 18 18 C 1.38824 * 119.99740 * 349.98848 * 16 15 14 19 19 N 1.31619 * 119.99709 * 324.47086 * 18 16 15 20 20 Si 1.86800 * 119.99863 * 144.47564 * 18 16 15 21 21 H 1.48503 * 109.47235 * 59.99729 * 20 18 16 22 22 H 1.48504 * 109.46868 * 300.00047 * 20 18 16 23 23 H 1.48498 * 109.47163 * 180.02562 * 20 18 16 24 24 C 1.47022 * 108.70013 * 24.35852 * 15 14 13 25 25 C 1.46892 * 111.27228 * 63.10601 * 10 9 8 26 26 C 1.47071 * 120.88365 * 5.18970 * 7 5 3 27 27 N 1.46899 * 109.47261 * 294.86244 * 3 2 1 28 28 C 1.46895 * 111.00630 * 181.43049 * 27 3 2 29 29 C 1.46899 * 110.99779 * 305.38771 * 27 3 2 30 30 H 1.09001 * 109.47128 * 305.09625 * 1 2 3 31 31 H 1.08997 * 109.47026 * 65.10277 * 1 2 3 32 32 H 1.09003 * 109.46867 * 185.10025 * 1 2 3 33 33 H 1.08998 * 109.47690 * 239.99476 * 2 1 3 34 34 H 1.09007 * 109.47121 * 120.00139 * 2 1 3 35 35 H 1.09004 * 109.62314 * 111.49914 * 8 7 5 36 36 H 1.08998 * 109.78948 * 351.01200 * 8 7 5 37 37 H 1.08998 * 109.49652 * 186.21523 * 9 8 7 38 38 H 1.09001 * 109.51585 * 66.14270 * 9 8 7 39 39 H 1.09003 * 111.00065 * 35.79270 * 13 11 10 40 40 H 1.09000 * 111.03849 * 271.95580 * 13 11 10 41 41 H 1.09003 * 110.36633 * 204.15075 * 14 13 11 42 42 H 1.09004 * 110.36431 * 81.83594 * 14 13 11 43 43 H 0.96991 * 120.00065 * 354.54365 * 19 18 16 44 44 H 1.09005 * 109.88220 * 118.13018 * 24 15 14 45 45 H 1.08995 * 109.88295 * 239.29016 * 24 15 14 46 46 H 1.08996 * 109.49455 * 56.84998 * 25 10 9 47 47 H 1.09005 * 109.49582 * 176.93733 * 25 10 9 48 48 H 1.08999 * 109.63351 * 248.49837 * 26 7 5 49 49 H 1.09005 * 109.62837 * 9.08376 * 26 7 5 50 50 H 1.09004 * 109.47193 * 68.14043 * 28 27 3 51 51 H 1.08995 * 109.47416 * 188.15091 * 28 27 3 52 52 H 1.09005 * 109.46948 * 308.14831 * 28 27 3 53 53 H 1.08996 * 109.47868 * 67.27165 * 29 27 3 54 54 H 1.09001 * 109.47297 * 187.28164 * 29 27 3 55 55 H 1.09009 * 109.46957 * 307.27329 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6035 1.9822 0.8404 5 6 3.5416 1.4443 0.1273 6 8 4.2300 1.7642 -0.8187 7 7 4.1196 1.0907 1.2923 8 6 5.5755 1.1932 1.4744 9 6 6.0957 -0.1482 2.0020 10 7 5.3437 -0.5216 3.2074 11 6 5.9239 -1.7126 3.8419 12 1 5.8344 -2.5792 3.1868 13 6 7.4070 -1.4639 4.2237 14 6 7.5948 -2.4520 5.4019 15 7 6.3142 -2.4173 6.1314 16 6 6.1387 -2.7365 7.4514 17 1 5.1973 -2.5268 7.9372 18 6 7.1711 -3.3298 8.1651 19 7 7.9726 -4.1888 7.5718 20 14 7.4226 -2.9090 9.9677 21 1 6.2030 -3.2687 10.7348 22 1 7.6820 -1.4532 10.1046 23 1 8.5830 -3.6700 10.4964 24 6 5.2556 -1.9893 5.2053 25 6 3.9207 -0.7263 2.9056 26 6 3.3114 0.5915 2.4151 27 7 1.6543 2.0983 -1.2566 28 6 2.1573 3.4775 -1.3068 29 6 2.1179 1.3262 -2.4172 30 1 -0.3633 0.5909 0.8408 31 1 -0.3633 0.4326 -0.9321 32 1 -0.3633 -1.0236 0.0914 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 5.8000 1.9812 2.1932 36 1 6.0516 1.4210 0.5207 37 1 7.1539 -0.0570 2.2472 38 1 5.9640 -0.9154 1.2390 39 1 7.5594 -0.4348 4.5489 40 1 8.0711 -1.7122 3.3958 41 1 8.4084 -2.1220 6.0478 42 1 7.7907 -3.4566 5.0268 43 1 7.7951 -4.4676 6.6599 44 1 4.5116 -2.7792 5.1022 45 1 4.7841 -1.0793 5.5763 46 1 3.8189 -1.4851 2.1298 47 1 3.4014 -1.0542 3.8061 48 1 3.3182 1.3217 3.2244 49 1 2.2879 0.4199 2.0816 50 1 3.2447 3.4651 -1.3817 51 1 1.7389 3.9855 -2.1756 52 1 1.8617 4.0053 -0.4000 53 1 1.5779 0.3806 -2.4639 54 1 1.9343 1.8949 -3.3288 55 1 3.1859 1.1303 -2.3201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046063680.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:18 Heat of formation + Delta-G solvation = 2.731173 kcal Electronic energy + Delta-G solvation = -31543.275996 eV Core-core repulsion = 27615.869494 eV Total energy + Delta-G solvation = -3927.406502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.93935 -40.35105 -38.63293 -37.58436 -35.95193 -34.27537 -33.67047 -32.36706 -31.05628 -29.77941 -28.83275 -28.36296 -27.09408 -25.91804 -24.90068 -24.07747 -23.04229 -21.97413 -21.69665 -21.20749 -19.87329 -19.56777 -18.60131 -17.43908 -17.27951 -16.67441 -16.49095 -16.37163 -16.04468 -15.87424 -15.74477 -15.56041 -15.40127 -15.01379 -14.92667 -14.67434 -14.47482 -14.10060 -13.85876 -13.51769 -13.36828 -13.27179 -12.96379 -12.87297 -12.72213 -12.69482 -12.60361 -12.56464 -12.46143 -12.42064 -12.32216 -12.02671 -11.89966 -11.83766 -11.77224 -11.70731 -11.65729 -11.51858 -11.25138 -10.44886 -9.87401 -9.36125 -9.18089 -9.04429 -8.41554 -5.25802 1.43357 1.57913 1.65783 1.85190 1.86932 2.58626 2.74295 2.89882 3.11503 3.36520 3.53925 3.58924 3.78584 3.82996 3.90563 3.97561 3.99714 4.13403 4.15651 4.20594 4.22907 4.31211 4.38999 4.42206 4.46612 4.55029 4.55904 4.61006 4.64344 4.68234 4.77500 4.77918 4.83989 4.85615 4.88120 4.90380 4.98581 5.02846 5.04143 5.07671 5.08154 5.16453 5.22646 5.28733 5.37496 5.51230 5.67295 5.86116 5.94628 5.95860 6.00767 6.28685 6.33643 6.87019 7.02704 7.70909 8.29762 8.94063 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024978 B = 0.002327 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.709260 B =12032.053680 C =12480.885189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.068 3.932 4 H 0.123 0.877 5 C 0.487 3.513 6 O -0.573 6.573 7 N -0.608 5.608 8 C 0.120 3.880 9 C 0.048 3.952 10 N -0.527 5.527 11 C 0.091 3.909 12 H 0.045 0.955 13 C -0.108 4.108 14 C 0.148 3.852 15 N -0.624 5.624 16 C -0.354 4.354 17 H 0.062 0.938 18 C -0.074 4.074 19 N -0.934 5.934 20 Si 1.108 2.892 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.292 1.292 24 C 0.149 3.851 25 C 0.038 3.962 26 C 0.107 3.893 27 N -0.511 5.511 28 C 0.012 3.988 29 C 0.007 3.993 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.022 0.978 42 H 0.001 0.999 43 H 0.253 0.747 44 H 0.012 0.988 45 H 0.040 0.960 46 H 0.037 0.963 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.121 0.879 50 H 0.030 0.970 51 H 0.077 0.923 52 H 0.071 0.929 53 H 0.073 0.927 54 H 0.068 0.932 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 13.253 -18.349 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C -0.044 4.044 4 H 0.141 0.859 5 C 0.275 3.725 6 O -0.453 6.453 7 N -0.341 5.341 8 C -0.003 4.003 9 C -0.080 4.080 10 N -0.252 5.252 11 C -0.018 4.018 12 H 0.063 0.937 13 C -0.146 4.146 14 C 0.021 3.979 15 N -0.352 5.352 16 C -0.482 4.482 17 H 0.080 0.920 18 C -0.271 4.271 19 N -0.576 5.576 20 Si 0.932 3.068 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.218 1.218 24 C 0.024 3.976 25 C -0.091 4.091 26 C -0.015 4.015 27 N -0.233 5.233 28 C -0.136 4.136 29 C -0.141 4.141 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.040 0.960 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.030 0.970 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.111 0.889 48 H 0.104 0.896 49 H 0.139 0.861 50 H 0.049 0.951 51 H 0.095 0.905 52 H 0.090 0.910 53 H 0.092 0.908 54 H 0.087 0.913 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.509 13.571 -17.148 25.704 hybrid contribution 0.284 -0.949 -1.723 1.987 sum -13.225 12.623 -18.870 26.274 Atomic orbital electron populations 1.21616 0.92783 1.02028 1.02963 1.21800 0.98687 0.92290 1.03091 1.22138 0.87660 0.98886 0.95714 0.85921 1.22553 0.92815 0.75650 0.81456 1.90596 1.66158 1.50358 1.38203 1.48466 1.08016 1.63817 1.13830 1.21616 0.80297 0.96938 1.01420 1.22434 0.99286 0.96181 0.90142 1.61938 1.02762 1.34297 1.26187 1.22356 0.94745 0.90768 0.93932 0.93741 1.22730 0.95089 0.99683 0.97105 1.21405 0.88749 0.95352 0.92345 1.44815 1.03620 1.79300 1.07441 1.19911 1.02891 1.39802 0.85562 0.91991 1.27009 0.96116 0.94810 1.09158 1.70922 1.44573 1.27356 1.14730 0.82959 0.76382 0.76208 0.71207 1.19858 1.20914 1.21842 1.21311 0.90767 0.96603 0.88961 1.22553 0.88675 0.97007 1.00837 1.22225 0.95624 0.94988 0.88647 1.62553 1.56821 1.02786 1.01172 1.22553 0.98886 0.89053 1.03133 1.22633 0.99763 0.98777 0.92910 0.91615 0.92192 0.92074 0.91975 0.89809 0.90257 0.89648 0.88784 0.95178 0.90289 0.89492 0.95987 0.98110 0.93722 0.96985 0.94196 0.94428 0.88948 0.89595 0.86111 0.95136 0.90452 0.91047 0.90793 0.91278 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.74 71.98 0.70 -0.71 16 2 C -0.12 -1.54 4.59 30.59 0.14 -1.40 16 3 C 0.07 1.04 1.40 44.17 0.06 1.10 16 4 H 0.12 1.49 7.68 -2.38 -0.02 1.48 16 5 C 0.49 10.05 6.33 87.66 0.56 10.60 16 6 O -0.57 -15.52 11.17 -3.04 -0.03 -15.56 16 7 N -0.61 -11.64 3.01 -817.92 -2.46 -14.10 16 8 C 0.12 2.49 6.61 86.35 0.57 3.06 16 9 C 0.05 1.07 5.45 86.38 0.47 1.54 16 10 N -0.53 -13.24 4.45 -863.05 -3.84 -17.08 16 11 C 0.09 2.90 2.64 46.11 0.12 3.02 16 12 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 13 C -0.11 -3.69 5.28 31.99 0.17 -3.52 16 14 C 0.15 6.95 5.34 86.86 0.46 7.41 16 15 N -0.62 -31.98 3.34 -691.97 -2.31 -34.29 16 16 C -0.35 -20.25 9.96 84.04 0.84 -19.41 16 17 H 0.06 3.53 8.03 -2.91 -0.02 3.50 16 18 C -0.07 -4.30 4.92 84.86 0.42 -3.88 16 19 N -0.93 -57.78 12.85 21.66 0.28 -57.50 16 20 Si 1.11 51.35 30.04 68.60 2.06 53.41 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 C 0.15 6.01 5.76 86.73 0.50 6.50 16 25 C 0.04 0.77 5.47 86.39 0.47 1.24 16 26 C 0.11 1.67 5.76 86.35 0.50 2.16 16 27 N -0.51 -8.55 4.61 -927.74 -4.28 -12.82 16 28 C 0.01 0.20 9.06 127.69 1.16 1.36 16 29 C 0.01 0.12 8.62 127.69 1.10 1.22 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.72 7.90 -2.39 -0.02 0.70 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.94 6.20 -2.39 -0.01 0.92 16 34 H 0.08 0.97 5.44 -2.38 -0.01 0.96 16 35 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.09 1.92 7.06 -2.39 -0.02 1.90 16 37 H 0.09 2.03 6.73 -2.39 -0.02 2.01 16 38 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 39 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.09 2.51 7.93 -2.39 -0.02 2.49 16 41 H 0.02 1.15 7.76 -2.39 -0.02 1.13 16 42 H 0.00 0.06 7.09 -2.38 -0.02 0.04 16 43 H 0.25 15.94 6.51 -92.71 -0.60 15.33 16 44 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.04 1.60 7.82 -2.39 -0.02 1.58 16 46 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 1.94 6.92 -2.38 -0.02 1.92 16 48 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.12 1.29 4.13 -2.38 -0.01 1.28 16 50 H 0.03 0.67 5.86 -2.38 -0.01 0.66 16 51 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.07 1.04 8.10 -2.38 -0.02 1.02 16 53 H 0.07 1.14 6.56 -2.39 -0.02 1.12 16 54 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 55 H 0.04 0.90 5.37 -2.38 -0.01 0.89 16 Total: -1.00 -70.94 400.27 -1.33 -72.28 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.02 Total: 15.37 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 8.23 Total: 10.31 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -12.61 Total: -135.80 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.03 Total: -15.56 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 2.06 Total: 53.41 kcal Total: -70.94 -1.33 -72.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046063680.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.007 kcal (2) G-P(sol) polarization free energy of solvation -70.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds