Wall clock time and date at job start Tue Mar 31 2020 21:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47074 * 2 1 4 4 H 1.08998 * 109.46637 * 183.15816 * 3 2 1 5 5 C 1.50701 * 109.47149 * 63.15985 * 3 2 1 6 6 O 1.21278 * 119.99852 * 265.15781 * 5 3 2 7 7 N 1.34778 * 120.00003 * 85.15332 * 5 3 2 8 8 C 1.47017 * 125.64991 * 354.92507 * 7 5 3 9 9 C 1.54324 * 107.27111 * 181.09601 * 8 7 5 10 10 C 1.55150 * 102.94359 * 22.18611 * 9 8 7 11 11 H 1.08999 * 111.03535 * 82.59070 * 10 9 8 12 12 N 1.46903 * 111.00531 * 206.42722 * 10 9 8 13 13 C 1.46905 * 110.99923 * 171.87358 * 12 10 9 14 14 C 1.53232 * 109.33945 * 187.25643 * 13 12 10 15 15 N 1.47081 * 108.51948 * 306.16756 * 14 13 12 16 16 C 1.36940 * 120.88153 * 231.16493 * 15 14 13 17 17 H 1.07997 * 119.99926 * 28.19604 * 16 15 14 18 18 C 1.38816 * 120.00021 * 208.19178 * 16 15 14 19 19 N 1.31621 * 119.99951 * 13.83374 * 18 16 15 20 20 Si 1.86792 * 120.00095 * 193.82910 * 18 16 15 21 21 H 1.48506 * 109.47297 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47249 * 120.00340 * 20 18 16 23 23 H 1.48508 * 109.47242 * 240.00373 * 20 18 16 24 24 C 1.47082 * 118.23745 * 51.18638 * 15 14 13 25 25 C 1.46894 * 110.99769 * 296.17227 * 12 10 9 26 26 C 1.47422 * 125.64278 * 174.96070 * 7 5 3 27 27 N 1.46895 * 109.47237 * 303.15503 * 3 2 1 28 28 C 1.46898 * 111.00008 * 181.23076 * 27 3 2 29 29 C 1.46901 * 111.00490 * 305.18892 * 27 3 2 30 30 H 1.08998 * 109.46785 * 62.76810 * 1 2 3 31 31 H 1.08993 * 109.47187 * 182.77524 * 1 2 3 32 32 H 1.09002 * 109.46530 * 302.77350 * 1 2 3 33 33 H 1.09006 * 109.47132 * 240.00317 * 2 1 3 34 34 H 1.08998 * 109.47359 * 120.00056 * 2 1 3 35 35 H 1.09005 * 109.87993 * 300.50734 * 8 7 5 36 36 H 1.09000 * 109.88705 * 61.67348 * 8 7 5 37 37 H 1.09007 * 110.71546 * 263.82524 * 9 8 7 38 38 H 1.08995 * 110.72181 * 140.55630 * 9 8 7 39 39 H 1.08999 * 109.49329 * 307.21320 * 13 12 10 40 40 H 1.08997 * 109.49105 * 67.29033 * 13 12 10 41 41 H 1.09003 * 109.63359 * 65.87290 * 14 13 12 42 42 H 1.08996 * 109.63275 * 186.46256 * 14 13 12 43 43 H 0.96995 * 120.00039 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.62849 * 189.10721 * 24 15 14 45 45 H 1.09001 * 109.62786 * 68.52892 * 24 15 14 46 46 H 1.09002 * 109.49457 * 292.70549 * 25 12 10 47 47 H 1.09001 * 109.49772 * 52.76450 * 25 12 10 48 48 H 1.08997 * 110.37000 * 37.00205 * 26 7 5 49 49 H 1.09000 * 110.46097 * 274.71710 * 26 7 5 50 50 H 1.09006 * 109.47158 * 63.89966 * 28 27 3 51 51 H 1.09002 * 109.46977 * 183.89794 * 28 27 3 52 52 H 1.08999 * 109.47490 * 303.89886 * 28 27 3 53 53 H 1.09006 * 109.46835 * 65.60542 * 29 27 3 54 54 H 1.08991 * 109.47394 * 185.60768 * 29 27 3 55 55 H 1.09007 * 109.46995 * 305.61189 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4430 -0.0566 5 6 1.6027 2.1300 1.2678 6 8 0.5867 2.7922 1.2790 7 7 2.3405 2.0088 2.3891 8 6 3.5289 1.1575 2.5450 9 6 4.0213 1.3197 3.9986 10 6 2.7530 1.8160 4.7417 11 1 2.1058 0.9814 5.0114 12 7 3.1124 2.6045 5.9279 13 6 1.9250 3.2339 6.5213 14 6 2.3610 4.1871 7.6390 15 7 3.2081 3.4431 8.5836 16 6 2.9499 3.4667 9.9282 17 1 1.9405 3.6169 10.2817 18 6 3.9856 3.2975 10.8369 19 7 5.2355 3.3868 10.4343 20 14 3.6054 2.9433 12.6311 21 1 2.1338 2.8926 12.8247 22 1 4.1999 1.6378 13.0147 23 1 4.1800 4.0176 13.4804 24 6 4.3401 2.6733 8.0457 25 6 3.8262 1.7797 6.9118 26 6 2.0890 2.7074 3.6627 27 7 1.4891 2.1567 -1.1595 28 6 1.9815 3.5398 -1.2084 29 6 1.7921 1.4455 -2.4086 30 1 -0.3633 0.4703 -0.9138 31 1 -0.3633 -1.0264 0.0498 32 1 -0.3632 0.5563 0.8641 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.2664 0.1164 2.3566 36 1 4.3073 1.4769 1.8521 37 1 4.8171 2.0625 4.0555 38 1 4.3552 0.3636 4.4016 39 1 1.3885 3.7933 5.7549 40 1 1.2729 2.4639 6.9335 41 1 2.9274 5.0156 7.2137 42 1 1.4821 4.5691 8.1582 43 1 5.9592 3.2690 11.0693 44 1 4.7695 2.0545 8.8336 45 1 5.0967 3.3563 7.6594 46 1 3.1475 1.0300 7.3187 47 1 4.6682 1.2841 6.4287 48 1 1.0175 2.7895 3.8452 49 1 2.5482 3.6959 3.6522 50 1 3.0618 3.5360 -1.3542 51 1 1.5051 4.0660 -2.0357 52 1 1.7431 4.0438 -0.2718 53 1 1.2736 0.4867 -2.4157 54 1 1.4608 2.0440 -3.2571 55 1 2.8669 1.2778 -2.4797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052043444.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:55 Heat of formation + Delta-G solvation = -4.335301 kcal Electronic energy + Delta-G solvation = -31216.862923 eV Core-core repulsion = 27289.149996 eV Total energy + Delta-G solvation = -3927.712927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.58311 -40.13135 -38.56584 -37.65315 -35.83412 -34.05151 -33.34843 -31.83265 -31.59786 -29.97479 -28.85666 -28.18902 -27.43787 -25.21083 -24.49286 -24.15530 -23.77585 -22.05196 -21.55668 -20.82267 -19.86139 -18.84440 -18.25324 -17.54251 -17.26214 -16.88643 -16.53023 -16.01678 -15.83812 -15.68843 -15.48067 -15.26998 -15.10307 -14.95349 -14.61846 -14.59155 -14.52826 -14.05935 -13.88054 -13.62450 -13.50257 -13.29531 -13.19736 -13.08210 -12.97102 -12.71499 -12.59204 -12.53190 -12.49699 -12.33951 -12.16757 -12.06833 -12.01542 -11.88432 -11.82776 -11.76834 -11.45401 -11.36379 -10.70878 -10.60343 -9.68455 -9.33369 -9.28168 -8.66527 -7.87849 -5.35012 1.45488 1.47043 1.57316 1.57633 1.79569 2.49775 2.90011 2.98960 3.28011 3.28780 3.65150 3.68125 3.69717 3.88598 3.96910 4.07682 4.19493 4.22058 4.27419 4.31705 4.36788 4.40428 4.42123 4.54495 4.56990 4.59290 4.61296 4.63073 4.67965 4.71803 4.75061 4.86952 4.87780 4.90001 4.98197 5.00145 5.01774 5.02664 5.09335 5.15973 5.18092 5.19906 5.26202 5.37721 5.49215 5.60874 5.71278 5.90217 6.06391 6.12417 6.23033 6.38374 6.50885 7.13951 7.15748 7.83087 8.37521 9.18735 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.002169 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.648411 B =12904.009173 C =13022.159714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C 0.077 3.923 4 H 0.079 0.921 5 C 0.531 3.469 6 O -0.564 6.564 7 N -0.620 5.620 8 C 0.103 3.897 9 C -0.117 4.117 10 C 0.072 3.928 11 H 0.050 0.950 12 N -0.526 5.526 13 C 0.054 3.946 14 C 0.146 3.854 15 N -0.615 5.615 16 C -0.263 4.263 17 H 0.064 0.936 18 C -0.050 4.050 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.292 1.292 24 C 0.185 3.815 25 C 0.055 3.945 26 C 0.123 3.877 27 N -0.543 5.543 28 C 0.025 3.975 29 C 0.024 3.976 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.022 0.978 41 H 0.017 0.983 42 H 0.057 0.943 43 H 0.251 0.749 44 H 0.059 0.941 45 H 0.000 1.000 46 H 0.018 0.982 47 H 0.091 0.909 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.036 0.964 51 H 0.079 0.921 52 H 0.044 0.956 53 H 0.082 0.918 54 H 0.076 0.924 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 -9.889 -26.381 28.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C -0.035 4.035 4 H 0.096 0.904 5 C 0.320 3.680 6 O -0.442 6.442 7 N -0.355 5.355 8 C -0.019 4.019 9 C -0.155 4.155 10 C -0.038 4.038 11 H 0.068 0.932 12 N -0.251 5.251 13 C -0.075 4.075 14 C 0.020 3.980 15 N -0.339 5.339 16 C -0.393 4.393 17 H 0.082 0.918 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.797 3.203 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.219 1.219 24 C 0.060 3.940 25 C -0.074 4.074 26 C -0.001 4.001 27 N -0.268 5.268 28 C -0.123 4.123 29 C -0.123 4.123 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.040 0.960 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.018 0.982 46 H 0.036 0.964 47 H 0.109 0.891 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.054 0.946 51 H 0.098 0.902 52 H 0.063 0.937 53 H 0.101 0.899 54 H 0.095 0.905 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.994 -9.147 -26.454 28.150 hybrid contribution 0.226 -0.154 1.712 1.733 sum -2.768 -9.301 -24.742 26.577 Atomic orbital electron populations 1.21627 0.95498 1.01034 1.01757 1.21608 0.96810 0.91886 1.04434 1.21684 0.98479 0.95355 0.87961 0.90357 1.20690 0.82442 0.80526 0.84362 1.90686 1.25853 1.42693 1.84927 1.48573 1.29971 1.45825 1.11178 1.22292 0.86665 0.95454 0.97526 1.22698 0.96644 1.03197 0.92926 1.22735 0.97200 0.94006 0.89818 0.93166 1.61943 1.23989 1.32501 1.06698 1.22453 0.91044 0.97231 0.96766 1.21089 0.93930 0.92878 0.90116 1.44408 1.32643 1.54401 1.02495 1.19531 0.92559 1.44424 0.82787 0.91825 1.25833 0.95196 1.01664 1.01886 1.70158 0.98554 1.54496 1.34863 0.85179 0.77832 0.77066 0.80181 1.19371 1.21388 1.21881 1.20657 0.88295 0.92369 0.92716 1.22584 0.97631 0.94340 0.92864 1.21995 0.99719 0.95913 0.82470 1.61660 1.60069 1.02525 1.02570 1.22380 0.97984 0.89474 1.02435 1.22527 0.99920 0.99889 0.90013 0.92012 0.91759 0.95625 0.88053 0.90163 0.88995 0.89191 0.89742 0.88224 0.89758 0.95957 0.96545 0.92458 0.93992 0.92262 0.98161 0.96368 0.89058 0.92339 0.91407 0.94579 0.90228 0.93665 0.89934 0.90515 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.37 71.98 0.67 -1.77 16 2 C -0.11 -1.39 5.12 30.60 0.16 -1.23 16 3 C 0.08 1.27 1.62 44.17 0.07 1.34 16 4 H 0.08 1.00 7.33 -2.39 -0.02 0.98 16 5 C 0.53 12.87 5.17 87.66 0.45 13.32 16 6 O -0.56 -18.71 15.04 -3.02 -0.05 -18.75 16 7 N -0.62 -13.57 3.33 -811.80 -2.70 -16.27 16 8 C 0.10 1.49 6.28 86.73 0.54 2.03 16 9 C -0.12 -2.12 5.43 31.78 0.17 -1.95 16 10 C 0.07 1.80 2.71 46.31 0.13 1.93 16 11 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 12 N -0.53 -17.24 4.53 -861.90 -3.90 -21.14 16 13 C 0.05 1.92 5.46 86.38 0.47 2.39 16 14 C 0.15 6.29 6.69 86.35 0.58 6.86 16 15 N -0.62 -31.62 3.03 -698.12 -2.12 -33.74 16 16 C -0.26 -14.68 9.63 84.03 0.81 -13.87 16 17 H 0.06 3.49 7.87 -2.91 -0.02 3.47 16 18 C -0.05 -2.83 5.00 84.86 0.42 -2.41 16 19 N -0.93 -55.14 11.07 21.65 0.24 -54.90 16 20 Si 0.97 45.02 29.58 68.60 2.03 47.05 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 C 0.19 8.94 5.39 86.35 0.47 9.41 16 25 C 0.05 1.99 5.49 86.39 0.47 2.47 16 26 C 0.12 3.18 5.25 86.86 0.46 3.64 16 27 N -0.54 -9.53 3.79 -927.72 -3.52 -13.05 16 28 C 0.03 0.46 9.25 127.69 1.18 1.64 16 29 C 0.02 0.25 8.73 127.69 1.11 1.36 16 30 H 0.06 1.13 6.94 -2.39 -0.02 1.12 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.02 0.61 6.75 -2.39 -0.02 0.59 16 33 H 0.10 0.79 6.65 -2.38 -0.02 0.77 16 34 H 0.08 0.88 7.03 -2.39 -0.02 0.86 16 35 H 0.09 0.94 7.03 -2.38 -0.02 0.93 16 36 H 0.09 0.97 7.79 -2.39 -0.02 0.95 16 37 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.10 1.49 7.94 -2.39 -0.02 1.47 16 39 H 0.08 2.62 6.73 -2.39 -0.02 2.60 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 43 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 44 H 0.06 3.20 6.14 -2.38 -0.01 3.19 16 45 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.09 2.78 6.94 -2.39 -0.02 2.77 16 48 H 0.06 1.71 7.70 -2.39 -0.02 1.69 16 49 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 51 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 52 H 0.04 1.09 6.31 -2.39 -0.02 1.08 16 53 H 0.08 0.73 6.05 -2.38 -0.01 0.72 16 54 H 0.08 0.73 8.07 -2.39 -0.02 0.71 16 55 H 0.04 0.32 8.13 -2.38 -0.02 0.30 16 Total: -1.00 -71.48 407.35 -1.00 -72.48 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.84 Total: 13.16 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 8.17 Total: 25.17 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -12.00 Total: -139.11 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -71.48 -1.00 -72.48 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052043444.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.147 kcal (2) G-P(sol) polarization free energy of solvation -71.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds