Wall clock time and date at job start Tue Mar 31 2020 22:25:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.46898 * 110.99798 * 2 1
4 4 C 1.46894 * 111.00235 * 236.04265 * 2 1 3
5 5 H 1.09001 * 109.47074 * 310.00219 * 4 2 1
6 6 C 1.53001 * 109.47408 * 69.99872 * 4 2 1
7 7 C 1.52998 * 109.47603 * 180.02562 * 6 4 2
8 8 C 1.53007 * 109.46825 * 299.99984 * 7 6 4
9 9 C 1.53004 * 109.46782 * 59.99940 * 8 7 6
10 10 C 1.52992 * 109.47185 * 299.99752 * 9 8 7
11 11 H 1.09001 * 109.47233 * 300.00041 * 10 9 8
12 12 N 1.46508 * 109.47049 * 180.02562 * 10 9 8
13 13 C 1.34777 * 119.99973 * 85.00254 * 12 10 9
14 14 O 1.21587 * 120.00100 * 359.97438 * 13 12 10
15 15 N 1.34774 * 119.99833 * 180.02562 * 13 12 10
16 16 C 1.46496 * 120.00296 * 179.97438 * 15 13 12
17 17 C 1.53042 * 109.46118 * 275.07243 * 16 15 13
18 18 C 1.53189 * 109.31384 * 178.61181 * 17 16 15
19 19 N 1.46925 * 108.77800 * 54.63138 * 18 17 16
20 20 C 1.36938 * 120.62892 * 126.36693 * 19 18 17
21 21 H 1.07993 * 120.00436 * 331.86431 * 20 19 18
22 22 C 1.38809 * 119.99735 * 151.86514 * 20 19 18
23 23 N 1.31620 * 120.00018 * 343.06612 * 22 20 19
24 24 Si 1.86801 * 120.00330 * 163.06675 * 22 20 19
25 25 H 1.48505 * 109.46908 * 89.99659 * 24 22 20
26 26 H 1.48498 * 109.47333 * 210.00069 * 24 22 20
27 27 H 1.48498 * 109.46806 * 330.00161 * 24 22 20
28 28 C 1.46926 * 118.73938 * 306.39611 * 19 18 17
29 29 C 1.53038 * 109.46503 * 155.00159 * 16 15 13
30 30 H 1.09001 * 109.46869 * 183.95170 * 1 2 3
31 31 H 1.09003 * 109.46766 * 63.95949 * 1 2 3
32 32 H 1.09001 * 109.47367 * 303.95555 * 1 2 3
33 33 H 1.08993 * 109.47760 * 56.04059 * 3 2 1
34 34 H 1.08998 * 109.46881 * 176.04439 * 3 2 1
35 35 H 1.09001 * 109.47205 * 296.04252 * 3 2 1
36 36 H 1.08999 * 109.47110 * 300.00206 * 6 4 2
37 37 H 1.09003 * 109.46758 * 59.99584 * 6 4 2
38 38 H 1.08991 * 109.46947 * 59.99653 * 7 6 4
39 39 H 1.09000 * 109.47267 * 180.02562 * 7 6 4
40 40 H 1.09000 * 109.46952 * 179.97438 * 8 7 6
41 41 H 1.09001 * 109.47405 * 300.00041 * 8 7 6
42 42 H 1.09003 * 109.47106 * 60.00440 * 9 8 7
43 43 H 1.08999 * 109.46876 * 179.97438 * 9 8 7
44 44 H 0.97004 * 119.99474 * 264.99803 * 12 10 9
45 45 H 0.97001 * 119.99810 * 0.02562 * 15 13 12
46 46 H 1.09001 * 109.45434 * 35.02407 * 16 15 13
47 47 H 1.08999 * 109.49476 * 298.56474 * 17 16 15
48 48 H 1.09004 * 109.50269 * 58.65594 * 17 16 15
49 49 H 1.09001 * 109.58875 * 294.84182 * 18 17 16
50 50 H 1.08999 * 109.70289 * 174.49056 * 18 17 16
51 51 H 0.97003 * 120.00542 * 180.02562 * 23 22 20
52 52 H 1.08999 * 109.58263 * 293.82087 * 28 19 18
53 53 H 1.09000 * 109.70664 * 173.46550 * 28 19 18
54 54 H 1.08999 * 109.49343 * 301.33823 * 29 16 15
55 55 H 1.08999 * 109.49531 * 61.40162 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9955 -0.7660 -1.1375
5 1 1.5090 -1.7407 -1.1755
6 6 1.7177 -0.0065 -2.4363
7 6 2.2655 -0.8046 -3.6211
8 6 3.7745 -0.9944 -3.4541
9 6 4.0523 -1.7540 -2.1553
10 6 3.5045 -0.9559 -0.9705
11 1 3.9913 0.0186 -0.9327
12 7 3.7710 -1.6830 0.2731
13 6 4.9588 -1.5429 0.8943
14 8 5.8094 -0.8136 0.4223
15 7 5.2041 -2.2122 2.0381
16 6 6.4955 -2.0605 2.7131
17 6 7.5086 -3.0294 2.0991
18 6 8.8664 -2.8436 2.7837
19 7 8.6893 -2.9949 4.2344
20 6 9.4540 -3.8838 4.9416
21 1 9.8426 -4.7672 4.4569
22 6 9.7298 -3.6495 6.2817
23 7 9.5560 -2.4475 6.7889
24 14 10.3474 -5.0401 7.3654
25 1 11.8313 -5.0788 7.3231
26 1 9.8976 -4.8160 8.7627
27 1 9.8043 -6.3310 6.8715
28 6 7.6757 -2.1749 4.9117
29 6 6.3312 -2.3681 4.2032
30 1 -0.3633 -1.0252 0.0708
31 1 -0.3633 0.4512 -0.9234
32 1 -0.3634 0.5740 0.8524
33 1 1.5898 1.9164 0.8523
34 1 3.0827 1.3432 0.0709
35 1 1.7044 1.8723 -0.9233
36 1 0.6427 0.1284 -2.5555
37 1 2.2041 0.9683 -2.3982
38 1 1.7787 -1.7790 -3.6588
39 1 2.0680 -0.2632 -4.5463
40 1 4.1647 -1.5634 -4.2979
41 1 4.2614 -0.0199 -3.4162
42 1 3.5655 -2.7286 -2.1931
43 1 5.1272 -1.8896 -2.0365
44 1 3.0924 -2.2651 0.6495
45 1 4.5259 -2.7950 2.4140
46 1 6.8512 -1.0375 2.5904
47 1 7.1657 -4.0539 2.2432
48 1 7.6077 -2.8250 1.0330
49 1 9.2530 -1.8483 2.5646
50 1 9.5669 -3.5957 2.4207
51 1 9.7490 -2.2835 7.7253
52 1 7.9651 -1.1250 4.8661
53 1 7.5879 -2.4848 5.9530
54 1 5.5923 -1.6930 4.6347
55 1 5.9988 -3.3987 4.3274
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001116042593.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:25:12
Heat of formation + Delta-G solvation = -36.266651 kcal
Electronic energy + Delta-G solvation = -31071.354133 eV
Core-core repulsion = 27142.256558 eV
Total energy + Delta-G solvation = -3929.097574 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.242 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.48893 -40.28807 -38.92402 -36.70778 -35.91018 -35.08883 -33.81221 -31.82905
-31.29676 -30.71427 -29.63744 -28.53111 -26.82831 -25.22062 -24.22723 -23.82591
-23.06654 -21.95878 -21.59935 -21.01008 -20.65445 -19.19575 -18.54237 -17.66274
-16.95961 -16.80837 -16.22631 -16.09743 -15.85608 -15.69863 -15.37930 -15.30711
-15.29488 -14.86359 -14.79138 -14.61364 -14.37019 -14.15599 -14.02693 -13.73701
-13.35025 -13.18012 -13.03759 -12.99306 -12.68599 -12.59979 -12.58814 -12.49716
-12.22373 -12.05574 -12.01733 -11.98513 -11.85927 -11.81544 -11.54430 -11.52893
-11.33901 -11.19107 -11.05096 -10.54765 -10.16365 -9.60860 -9.17276 -8.69784
-7.86798 -5.32538 1.49026 1.49972 1.60394 1.80177 2.29891 2.52980
2.96504 3.27458 3.37959 3.62728 3.67830 3.88564 3.93843 4.05017
4.09757 4.10365 4.21491 4.29789 4.37212 4.37588 4.43008 4.47912
4.48554 4.53447 4.65044 4.66804 4.68113 4.83531 4.86963 4.87448
4.90516 5.02212 5.04970 5.08159 5.09069 5.10287 5.14157 5.15505
5.18151 5.23881 5.31025 5.34130 5.46049 5.48417 5.65115 5.67228
5.70974 5.71523 6.07779 6.14561 6.16791 6.40002 7.15258 7.25836
7.74500 7.84732 8.38325 9.20548
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.023851 B = 0.002235 C = 0.002126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1173.690314 B =12526.130586 C =13169.157178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.547 5.547
3 C 0.022 3.978
4 C 0.085 3.915
5 H 0.102 0.898
6 C -0.145 4.145
7 C -0.110 4.110
8 C -0.116 4.116
9 C -0.126 4.126
10 C 0.177 3.823
11 H 0.057 0.943
12 N -0.716 5.716
13 C 0.702 3.298
14 O -0.640 6.640
15 N -0.728 5.728
16 C 0.184 3.816
17 C -0.122 4.122
18 C 0.145 3.855
19 N -0.609 5.609
20 C -0.263 4.263
21 H 0.067 0.933
22 C -0.051 4.051
23 N -0.936 5.936
24 Si 0.970 3.030
25 H -0.287 1.287
26 H -0.291 1.291
27 H -0.269 1.269
28 C 0.180 3.820
29 C -0.127 4.127
30 H 0.077 0.923
31 H 0.035 0.965
32 H 0.067 0.933
33 H 0.068 0.932
34 H 0.046 0.954
35 H 0.041 0.959
36 H 0.081 0.919
37 H 0.060 0.940
38 H 0.076 0.924
39 H 0.074 0.926
40 H 0.073 0.927
41 H 0.051 0.949
42 H 0.078 0.922
43 H 0.040 0.960
44 H 0.408 0.592
45 H 0.408 0.592
46 H 0.051 0.949
47 H 0.065 0.935
48 H 0.056 0.944
49 H 0.005 0.995
50 H 0.057 0.943
51 H 0.251 0.749
52 H -0.007 1.007
53 H 0.064 0.936
54 H 0.074 0.926
55 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.079 2.201 -19.645 31.154
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.270 5.270
3 C -0.127 4.127
4 C -0.024 4.024
5 H 0.120 0.880
6 C -0.185 4.185
7 C -0.148 4.148
8 C -0.154 4.154
9 C -0.165 4.165
10 C 0.071 3.929
11 H 0.075 0.925
12 N -0.370 5.370
13 C 0.402 3.598
14 O -0.522 6.522
15 N -0.383 5.383
16 C 0.078 3.922
17 C -0.162 4.162
18 C 0.019 3.981
19 N -0.332 5.332
20 C -0.394 4.394
21 H 0.085 0.915
22 C -0.246 4.246
23 N -0.582 5.582
24 Si 0.798 3.202
25 H -0.213 1.213
26 H -0.217 1.217
27 H -0.193 1.193
28 C 0.053 3.947
29 C -0.166 4.166
30 H 0.096 0.904
31 H 0.054 0.946
32 H 0.086 0.914
33 H 0.087 0.913
34 H 0.065 0.935
35 H 0.059 0.941
36 H 0.099 0.901
37 H 0.078 0.922
38 H 0.094 0.906
39 H 0.092 0.908
40 H 0.092 0.908
41 H 0.070 0.930
42 H 0.096 0.904
43 H 0.059 0.941
44 H 0.244 0.756
45 H 0.244 0.756
46 H 0.070 0.930
47 H 0.084 0.916
48 H 0.074 0.926
49 H 0.023 0.977
50 H 0.076 0.924
51 H 0.060 0.940
52 H 0.011 0.989
53 H 0.082 0.918
54 H 0.093 0.907
55 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -23.146 2.686 -19.451 30.353
hybrid contribution 0.209 -0.216 0.545 0.622
sum -22.937 2.470 -18.906 29.827
Atomic orbital electron populations
1.22441 0.86009 1.02989 1.00995 1.62148 1.08875 1.13875 1.42082
1.22382 0.99836 0.89396 1.01041 1.21970 0.92919 0.98634 0.88910
0.88048 1.22145 1.01926 0.99600 0.94813 1.21467 0.94500 1.00981
0.97811 1.21503 0.97206 1.00079 0.96611 1.21902 1.00256 0.99843
0.94527 1.20768 0.94965 0.94782 0.82348 0.92528 1.44809 1.14758
1.50889 1.26505 1.16132 0.82922 0.80192 0.80580 1.90878 1.47866
1.44956 1.68511 1.45110 1.18015 1.50124 1.25031 1.20425 0.82259
0.98199 0.91325 1.22165 0.96005 0.99497 0.98530 1.20957 0.95218
0.97630 0.84293 1.44344 1.39931 1.46066 1.02869 1.19515 1.26439
0.99944 0.93457 0.91483 1.25838 1.00519 0.98183 1.00061 1.70191
1.53879 1.20687 1.13479 0.85247 0.77765 0.79420 0.77808 1.21338
1.21719 1.19334 1.20553 0.85845 0.91820 0.96457 1.22241 0.98887
1.02009 0.93479 0.90398 0.94616 0.91378 0.91336 0.93542 0.94084
0.90099 0.92174 0.90570 0.90755 0.90785 0.93011 0.90367 0.94069
0.75572 0.75649 0.93049 0.91601 0.92568 0.97712 0.92420 0.94003
0.98920 0.91775 0.90739 0.91107
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.24 9.36 127.69 1.20 1.43 16
2 N -0.55 -8.02 4.80 -923.29 -4.43 -12.46 16
3 C 0.02 0.36 8.78 127.69 1.12 1.48 16
4 C 0.08 1.12 1.71 44.92 0.08 1.20 16
5 H 0.10 1.07 8.06 -2.39 -0.02 1.06 16
6 C -0.15 -1.58 4.45 30.59 0.14 -1.45 16
7 C -0.11 -1.07 5.92 30.60 0.18 -0.89 16
8 C -0.12 -1.65 5.92 30.60 0.18 -1.47 16
9 C -0.13 -2.31 5.49 30.59 0.17 -2.14 16
10 C 0.18 3.48 1.71 44.99 0.08 3.56 16
11 H 0.06 1.50 5.99 -2.39 -0.01 1.48 16
12 N -0.72 -15.32 4.92 -457.81 -2.25 -17.57 16
13 C 0.70 21.38 8.49 179.06 1.52 22.90 16
14 O -0.64 -25.70 15.67 -3.99 -0.06 -25.76 16
15 N -0.73 -20.67 5.08 -457.70 -2.33 -22.99 16
16 C 0.18 6.63 2.41 45.02 0.11 6.74 16
17 C -0.12 -4.59 5.65 30.67 0.17 -4.41 16
18 C 0.15 6.55 6.52 86.36 0.56 7.12 16
19 N -0.61 -31.56 2.99 -699.12 -2.09 -33.65 16
20 C -0.26 -14.72 9.58 84.03 0.81 -13.92 16
21 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16
22 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16
23 N -0.94 -56.01 11.19 21.65 0.24 -55.76 16
24 Si 0.97 44.98 29.59 68.60 2.03 47.01 16
25 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16
26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16
27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16
28 C 0.18 8.83 5.30 86.36 0.46 9.28 16
29 C -0.13 -4.69 5.55 30.67 0.17 -4.52 16
30 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16
31 H 0.04 0.31 6.62 -2.39 -0.02 0.29 16
32 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16
33 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16
34 H 0.05 1.03 6.47 -2.39 -0.02 1.01 16
35 H 0.04 0.58 6.21 -2.39 -0.01 0.57 16
36 H 0.08 0.69 6.69 -2.39 -0.02 0.68 16
37 H 0.06 0.80 6.33 -2.39 -0.02 0.79 16
38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16
39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16
42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
43 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16
44 H 0.41 6.53 8.62 -92.71 -0.80 5.73 16
45 H 0.41 8.85 8.62 -92.71 -0.80 8.05 16
46 H 0.05 2.18 7.58 -2.39 -0.02 2.17 16
47 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
48 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
49 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16
50 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16
51 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16
52 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16
53 H 0.06 3.49 6.06 -2.39 -0.01 3.48 16
54 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16
55 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16
Total: -1.00 -71.06 410.79 -2.26 -73.32
By element:
Atomic # 1 Polarization: 26.14 SS G_CDS: -0.72 Total: 25.42 kcal
Atomic # 6 Polarization: 15.10 SS G_CDS: 7.35 Total: 22.46 kcal
Atomic # 7 Polarization: -131.58 SS G_CDS: -10.86 Total: -142.44 kcal
Atomic # 8 Polarization: -25.70 SS G_CDS: -0.06 Total: -25.76 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal
Total: -71.06 -2.26 -73.32 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001116042593.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.055 kcal
(2) G-P(sol) polarization free energy of solvation -71.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.263 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.322 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.267 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds