Wall clock time and date at job start Tue Mar 31 2020 22:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46904 * 110.99498 * 2 1 4 4 C 1.46896 * 110.99909 * 123.95316 * 2 1 3 5 5 H 1.09002 * 109.47091 * 55.00194 * 4 2 1 6 6 C 1.53006 * 109.47202 * 295.00110 * 4 2 1 7 7 C 1.52999 * 109.46931 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47187 * 60.00048 * 7 6 4 9 9 C 1.52996 * 109.47052 * 299.99718 * 8 7 6 10 10 C 1.52996 * 109.46976 * 175.00122 * 4 2 1 11 11 H 1.09002 * 109.47152 * 60.00109 * 10 4 2 12 12 N 1.46505 * 109.47135 * 299.99995 * 10 4 2 13 13 C 1.34774 * 119.99576 * 154.72647 * 12 10 4 14 14 O 1.21587 * 120.00356 * 0.27351 * 13 12 10 15 15 N 1.34779 * 119.99499 * 180.27612 * 13 12 10 16 16 C 1.46499 * 119.99890 * 179.97438 * 15 13 12 17 17 C 1.53042 * 109.46104 * 275.02488 * 16 15 13 18 18 C 1.53191 * 109.31389 * 178.59921 * 17 16 15 19 19 N 1.46926 * 108.76379 * 54.65647 * 18 17 16 20 20 C 1.36938 * 120.62973 * 126.35991 * 19 18 17 21 21 H 1.08000 * 119.99916 * 207.69232 * 20 19 18 22 22 C 1.38816 * 120.00034 * 27.69768 * 20 19 18 23 23 N 1.31618 * 119.99738 * 17.36081 * 22 20 19 24 24 Si 1.86802 * 119.99978 * 197.36042 * 22 20 19 25 25 H 1.48500 * 109.47054 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46942 * 119.99718 * 24 22 20 27 27 H 1.48504 * 109.46774 * 239.99858 * 24 22 20 28 28 C 1.46924 * 118.73864 * 306.38466 * 19 18 17 29 29 C 1.53036 * 109.46298 * 154.97136 * 16 15 13 30 30 H 1.08993 * 109.47053 * 296.04730 * 1 2 3 31 31 H 1.09001 * 109.46906 * 56.05055 * 1 2 3 32 32 H 1.09004 * 109.46803 * 176.04525 * 1 2 3 33 33 H 1.09001 * 109.46480 * 183.95372 * 3 2 1 34 34 H 1.09001 * 109.47166 * 303.95126 * 3 2 1 35 35 H 1.08993 * 109.47209 * 63.95315 * 3 2 1 36 36 H 1.09003 * 109.46918 * 60.00240 * 6 4 2 37 37 H 1.08994 * 109.46607 * 300.00336 * 6 4 2 38 38 H 1.09002 * 109.47151 * 299.99954 * 7 6 4 39 39 H 1.09001 * 109.46765 * 180.02562 * 7 6 4 40 40 H 1.08997 * 109.47139 * 179.97438 * 8 7 6 41 41 H 1.09002 * 109.47152 * 59.99907 * 8 7 6 42 42 H 1.08994 * 109.47261 * 299.99754 * 9 8 7 43 43 H 1.09003 * 109.46825 * 179.97438 * 9 8 7 44 44 H 0.96990 * 119.99748 * 334.99967 * 12 10 4 45 45 H 0.97002 * 120.00345 * 359.97438 * 15 13 12 46 46 H 1.09001 * 109.45939 * 34.99690 * 16 15 13 47 47 H 1.08994 * 109.50031 * 298.57038 * 17 16 15 48 48 H 1.08996 * 109.49487 * 58.66344 * 17 16 15 49 49 H 1.09004 * 109.60244 * 294.86921 * 18 17 16 50 50 H 1.09001 * 109.58548 * 174.43935 * 18 17 16 51 51 H 0.96998 * 119.99797 * 180.02562 * 23 22 20 52 52 H 1.08998 * 109.58724 * 293.81545 * 28 19 18 53 53 H 1.09007 * 109.58683 * 173.39647 * 28 19 18 54 54 H 1.09003 * 109.49732 * 301.33839 * 29 16 15 55 55 H 1.08999 * 109.49606 * 61.39799 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.5754 -1.7717 1.1240 6 6 1.6091 -0.0695 2.4440 7 6 2.1579 -0.8669 3.6287 8 6 3.6822 -0.9489 3.5260 9 6 4.0686 -1.6454 2.2197 10 6 3.5198 -0.8485 1.0351 11 1 3.9399 0.1572 1.0487 12 7 3.8898 -1.5154 -0.2158 13 6 5.0893 -1.2720 -0.7799 14 8 5.8664 -0.5027 -0.2482 15 7 5.4274 -1.8812 -1.9336 16 6 6.7311 -1.6163 -2.5472 17 6 6.6419 -0.3550 -3.4094 18 6 8.0153 -0.0613 -4.0212 19 7 8.4756 -1.2548 -4.7441 20 6 8.8616 -1.1706 -6.0552 21 1 8.7690 -2.0309 -6.7016 22 6 9.3720 0.0202 -6.5535 23 7 9.8048 0.9479 -5.7261 24 14 9.4447 0.3061 -8.3980 25 1 8.9015 -0.8816 -9.1048 26 1 8.6363 1.5022 -8.7458 27 1 10.8546 0.5247 -8.8098 28 6 8.5133 -2.5402 -4.0336 29 6 7.1345 -2.8059 -3.4213 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0253 -0.0709 33 1 3.0828 1.3433 -0.0709 34 1 1.5898 1.9164 -0.8525 35 1 1.7043 1.8724 0.9232 36 1 0.5231 -0.0107 2.5169 37 1 2.0291 0.9362 2.4575 38 1 1.7382 -1.8728 3.6153 39 1 1.8823 -0.3710 4.5594 40 1 4.0733 -1.5167 4.3703 41 1 4.1019 0.0570 3.5394 42 1 3.6490 -2.6512 2.2063 43 1 5.1546 -1.7034 2.1463 44 1 3.2699 -2.1290 -0.6399 45 1 4.8076 -2.4952 -2.3576 46 1 7.4771 -1.4701 -1.7660 47 1 5.9140 -0.5094 -4.2058 48 1 6.3318 0.4873 -2.7909 49 1 8.7238 0.1823 -3.2295 50 1 7.9352 0.7769 -4.7133 51 1 10.1611 1.7802 -6.0743 52 1 9.2624 -2.4989 -3.2429 53 1 8.7620 -3.3377 -4.7339 54 1 7.1750 -3.7083 -2.8113 55 1 6.4016 -2.9374 -4.2173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116042594.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:15 Heat of formation + Delta-G solvation = -36.205076 kcal Electronic energy + Delta-G solvation = -31191.764790 eV Core-core repulsion = 27262.669886 eV Total energy + Delta-G solvation = -3929.094904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.51056 -40.29739 -38.92588 -36.70457 -35.92242 -35.10379 -33.80958 -31.78928 -31.34582 -30.72056 -29.64451 -28.54110 -26.83164 -25.25192 -24.17167 -23.87356 -23.06721 -21.96526 -21.60317 -21.03580 -20.64917 -19.14197 -18.60886 -17.67340 -16.96485 -16.80909 -16.33436 -16.01547 -15.85705 -15.67206 -15.44964 -15.33862 -15.21502 -14.87491 -14.76758 -14.69641 -14.30752 -14.19893 -14.00297 -13.77226 -13.34367 -13.16354 -13.04471 -13.00210 -12.72698 -12.64454 -12.60205 -12.56341 -12.10744 -12.06894 -12.02029 -11.96814 -11.84844 -11.80852 -11.55989 -11.50878 -11.36187 -11.18248 -11.05613 -10.58134 -10.16026 -9.61771 -9.18747 -8.71185 -7.86394 -5.32372 1.47313 1.48831 1.59912 1.79126 2.29871 2.52347 2.95956 3.27827 3.37819 3.60983 3.68342 3.88137 3.92063 4.04381 4.09249 4.12893 4.20581 4.29228 4.35706 4.37485 4.42194 4.47117 4.49892 4.52684 4.64005 4.66460 4.68961 4.82278 4.86772 4.88250 4.90376 5.03623 5.04488 5.07663 5.10980 5.11143 5.13761 5.14946 5.15989 5.23435 5.33503 5.33647 5.45398 5.48129 5.64720 5.67190 5.70169 5.71030 6.05487 6.13626 6.16717 6.39373 7.13895 7.26382 7.74704 7.85200 8.38233 9.20890 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.002375 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.651785 B =11784.472314 C =12382.130870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.546 5.546 3 C 0.022 3.978 4 C 0.085 3.915 5 H 0.105 0.895 6 C -0.147 4.147 7 C -0.109 4.109 8 C -0.116 4.116 9 C -0.125 4.125 10 C 0.174 3.826 11 H 0.055 0.945 12 N -0.715 5.715 13 C 0.700 3.300 14 O -0.642 6.642 15 N -0.727 5.727 16 C 0.183 3.817 17 C -0.128 4.128 18 C 0.184 3.816 19 N -0.609 5.609 20 C -0.259 4.259 21 H 0.075 0.925 22 C -0.057 4.057 23 N -0.939 5.939 24 Si 0.969 3.031 25 H -0.261 1.261 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.141 3.859 29 C -0.120 4.120 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.081 0.919 43 H 0.040 0.960 44 H 0.409 0.591 45 H 0.409 0.591 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.039 0.961 49 H -0.013 1.013 50 H 0.054 0.946 51 H 0.249 0.751 52 H 0.011 0.989 53 H 0.069 0.931 54 H 0.091 0.909 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.788 -8.024 17.872 30.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.126 4.126 4 C -0.024 4.024 5 H 0.123 0.877 6 C -0.186 4.186 7 C -0.147 4.147 8 C -0.155 4.155 9 C -0.164 4.164 10 C 0.069 3.931 11 H 0.073 0.927 12 N -0.369 5.369 13 C 0.400 3.600 14 O -0.524 6.524 15 N -0.382 5.382 16 C 0.077 3.923 17 C -0.168 4.168 18 C 0.058 3.942 19 N -0.333 5.333 20 C -0.389 4.389 21 H 0.093 0.907 22 C -0.252 4.252 23 N -0.586 5.586 24 Si 0.797 3.203 25 H -0.185 1.185 26 H -0.219 1.219 27 H -0.221 1.221 28 C 0.015 3.985 29 C -0.159 4.159 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.245 0.755 45 H 0.245 0.755 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.005 0.995 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.029 0.971 53 H 0.087 0.913 54 H 0.109 0.891 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.877 -7.446 17.840 29.951 hybrid contribution 0.082 0.912 -0.612 1.102 sum -22.795 -6.534 17.228 29.310 Atomic orbital electron populations 1.22453 0.85979 1.03090 1.00995 1.62183 1.08941 1.13665 1.42080 1.22366 0.99792 0.89586 1.00895 1.21989 0.92442 0.99073 0.88888 0.87737 1.22157 1.01834 0.99734 0.94901 1.21461 0.94267 1.01154 0.97808 1.21504 0.96955 1.00337 0.96666 1.21883 1.00017 1.00135 0.94353 1.20795 0.94131 0.95795 0.82427 0.92710 1.44793 1.15921 1.49906 1.26301 1.16169 0.82612 0.80456 0.80748 1.90892 1.53113 1.42094 1.66256 1.45082 1.19592 1.49466 1.24019 1.20447 0.83522 0.94858 0.93451 1.22292 0.98757 0.97558 0.98204 1.20450 0.90308 0.90323 0.93166 1.44367 1.75114 1.04317 1.09504 1.19615 1.34481 0.98361 0.86431 0.90748 1.25886 0.98653 0.98626 1.02010 1.70227 1.44983 1.08522 1.34836 0.85175 0.76770 0.77868 0.80447 1.18527 1.21949 1.22058 1.21051 0.94432 0.88202 0.94772 1.22124 0.98457 0.96593 0.98745 0.94521 0.91513 0.90161 0.93690 0.91458 0.94282 0.89894 0.92543 0.90348 0.90795 0.90639 0.93254 0.90064 0.94083 0.75465 0.75501 0.92953 0.92270 0.94187 0.99492 0.92750 0.94227 0.97097 0.91260 0.89099 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.31 127.69 1.19 1.44 16 2 N -0.55 -8.63 4.84 -923.26 -4.47 -13.10 16 3 C 0.02 0.42 8.82 127.69 1.13 1.54 16 4 C 0.09 1.18 1.75 44.92 0.08 1.26 16 5 H 0.10 1.12 8.13 -2.39 -0.02 1.10 16 6 C -0.15 -1.70 4.51 30.60 0.14 -1.56 16 7 C -0.11 -1.10 5.92 30.59 0.18 -0.92 16 8 C -0.12 -1.70 5.92 30.59 0.18 -1.52 16 9 C -0.12 -2.29 5.50 30.58 0.17 -2.13 16 10 C 0.17 3.54 1.58 44.97 0.07 3.61 16 11 H 0.05 1.52 5.85 -2.39 -0.01 1.50 16 12 N -0.71 -15.57 4.91 -457.88 -2.25 -17.82 16 13 C 0.70 21.80 8.50 179.05 1.52 23.32 16 14 O -0.64 -26.74 15.66 -3.99 -0.06 -26.80 16 15 N -0.73 -20.50 5.08 -457.69 -2.33 -22.82 16 16 C 0.18 6.57 2.42 45.02 0.11 6.67 16 17 C -0.13 -5.44 5.65 30.67 0.17 -5.26 16 18 C 0.18 9.66 5.31 86.36 0.46 10.12 16 19 N -0.61 -31.47 2.99 -699.10 -2.09 -33.57 16 20 C -0.26 -14.39 9.58 84.03 0.81 -13.59 16 21 H 0.07 3.94 7.89 -2.91 -0.02 3.92 16 22 C -0.06 -3.26 4.91 84.86 0.42 -2.84 16 23 N -0.94 -57.94 11.19 21.65 0.24 -57.70 16 24 Si 0.97 45.67 29.59 68.60 2.03 47.70 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 C 0.14 5.83 6.52 86.36 0.56 6.39 16 29 C -0.12 -3.82 5.55 30.67 0.17 -3.65 16 30 H 0.04 0.35 6.44 -2.39 -0.02 0.33 16 31 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.04 1.13 6.33 -2.39 -0.02 1.11 16 34 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 35 H 0.04 0.64 6.28 -2.39 -0.02 0.63 16 36 H 0.08 0.75 6.52 -2.39 -0.02 0.74 16 37 H 0.06 0.82 6.38 -2.39 -0.02 0.81 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.41 6.54 8.62 -92.72 -0.80 5.74 16 45 H 0.41 8.47 8.62 -92.71 -0.80 7.67 16 46 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 47 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 49 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 50 H 0.05 3.20 6.04 -2.39 -0.01 3.19 16 51 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 52 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 53 H 0.07 2.68 7.93 -2.38 -0.02 2.66 16 54 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 55 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -74.10 410.33 -2.30 -76.40 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.72 Total: 24.82 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 7.35 Total: 22.89 kcal Atomic # 7 Polarization: -134.12 SS G_CDS: -10.90 Total: -145.01 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.06 Total: -26.80 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -74.10 -2.30 -76.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116042594.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.193 kcal (2) G-P(sol) polarization free energy of solvation -74.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds