Wall clock time and date at job start Tue Mar 31 2020 21:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 N 1.46908 * 109.46871 * 119.99943 * 2 1 3 5 5 C 1.46954 * 110.99966 * 51.20305 * 4 2 1 6 6 C 1.53057 * 109.36263 * 183.18687 * 5 4 2 7 7 N 1.46956 * 109.36162 * 301.59585 * 6 5 4 8 8 C 1.46899 * 110.99677 * 183.18894 * 7 6 5 9 9 C 1.53126 * 109.52323 * 294.68446 * 8 7 6 10 10 C 1.53032 * 109.27857 * 182.44192 * 9 8 7 11 11 N 1.46847 * 109.52520 * 59.17860 * 10 9 8 12 12 C 1.46902 * 111.00327 * 174.16251 * 11 10 9 13 13 C 1.50698 * 109.46956 * 294.21207 * 12 11 10 14 14 O 1.21296 * 119.99910 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00128 * 179.97438 * 13 12 11 16 16 C 1.37102 * 119.99815 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00287 * 0.02562 * 16 15 13 18 18 C 1.38947 * 119.99523 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00547 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99797 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47075 * 59.99929 * 20 18 16 22 22 H 1.48506 * 109.47003 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47132 * 299.99804 * 20 18 16 24 24 C 1.46845 * 111.19623 * 298.25755 * 11 10 9 25 25 C 1.53037 * 109.52589 * 61.74177 * 24 11 10 26 26 C 1.46954 * 110.88042 * 59.32472 * 7 6 5 27 27 C 1.46956 * 110.99532 * 174.99900 * 4 2 1 28 28 H 1.09001 * 109.47275 * 300.00010 * 1 2 3 29 29 H 1.08997 * 109.47101 * 60.00124 * 1 2 3 30 30 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47357 * 239.99530 * 2 1 3 32 32 H 1.08997 * 109.46672 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47010 * 299.99932 * 3 2 1 34 34 H 1.09001 * 109.47033 * 59.99842 * 3 2 1 35 35 H 1.08997 * 109.49355 * 63.21813 * 5 4 2 36 36 H 1.09004 * 109.48943 * 303.15264 * 5 4 2 37 37 H 1.09002 * 109.48707 * 181.63135 * 6 5 4 38 38 H 1.09002 * 109.48655 * 61.56567 * 6 5 4 39 39 H 1.09004 * 109.52405 * 54.87283 * 8 7 6 40 40 H 1.08996 * 109.50105 * 302.38355 * 9 8 7 41 41 H 1.08999 * 109.50482 * 62.49929 * 9 8 7 42 42 H 1.09001 * 109.46285 * 299.16180 * 10 9 8 43 43 H 1.09000 * 109.46302 * 179.19324 * 10 9 8 44 44 H 1.09000 * 109.47215 * 54.20483 * 12 11 10 45 45 H 1.08994 * 109.47538 * 174.20959 * 12 11 10 46 46 H 0.96997 * 119.99890 * 0.02562 * 15 13 12 47 47 H 0.97000 * 120.00288 * 179.97438 * 19 18 16 48 48 H 1.08998 * 109.46689 * 301.72216 * 24 11 10 49 49 H 1.09005 * 109.46569 * 181.75971 * 24 11 10 50 50 H 1.08999 * 109.50838 * 180.87889 * 25 24 11 51 51 H 1.08997 * 109.50136 * 60.75960 * 25 24 11 52 52 H 1.08997 * 109.49355 * 60.64341 * 26 7 6 53 53 H 1.09004 * 109.48943 * 180.70890 * 26 7 6 54 54 H 1.09002 * 109.48908 * 56.84799 * 27 4 2 55 55 H 1.09002 * 109.49369 * 296.77670 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3847 -2.0100 1.3430 6 6 1.8603 -2.6637 2.6427 7 7 3.3244 -2.7877 2.6183 8 6 3.8140 -3.4802 3.8178 9 6 3.5263 -2.6256 5.0554 10 6 4.0925 -3.3234 6.2940 11 7 5.5399 -3.5115 6.1327 12 6 6.1404 -4.0530 7.3592 13 6 6.0266 -3.0361 8.4655 14 8 5.4977 -1.9654 8.2530 15 7 6.5124 -3.3163 9.6910 16 6 6.4093 -2.3908 10.6973 17 1 5.9384 -1.4375 10.5082 18 6 6.9107 -2.6796 11.9606 19 7 7.4841 -3.8394 12.1908 20 14 6.7696 -1.4190 13.3320 21 1 5.3375 -1.1113 13.5760 22 1 7.3772 -1.9661 14.5717 23 1 7.4826 -0.1773 12.9382 24 6 5.8386 -4.3682 4.9781 25 6 5.3245 -3.7016 3.7000 26 6 3.9593 -1.4702 2.4748 27 6 3.4837 -0.8166 1.1751 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6595 -2.6403 0.4973 36 1 0.3016 -1.8906 1.3712 37 1 1.4130 -3.6532 2.7369 38 1 1.5615 -2.0470 3.4904 39 1 3.3112 -4.4426 3.9136 40 1 3.9969 -1.6492 4.9407 41 1 2.4495 -2.5002 5.1687 42 1 3.6115 -4.2939 6.4158 43 1 3.9019 -2.7106 7.1751 44 1 5.6170 -4.9644 7.6483 45 1 7.1915 -4.2789 7.1801 46 1 6.9357 -4.1723 9.8609 47 1 7.8345 -4.0407 13.0726 48 1 5.3495 -5.3338 5.1060 49 1 6.9162 -4.5143 4.9033 50 1 5.5324 -4.3449 2.8450 51 1 5.8234 -2.7421 3.5641 52 1 3.6845 -0.8400 3.3206 53 1 5.0424 -1.5896 2.4467 54 1 3.9310 0.1730 1.0809 55 1 3.7825 -1.4333 0.3275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116397085.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:33 Heat of formation + Delta-G solvation = -37.613345 kcal Electronic energy + Delta-G solvation = -30640.555583 eV Core-core repulsion = 26711.399611 eV Total energy + Delta-G solvation = -3929.155972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.23786 -40.31550 -39.15753 -37.21284 -35.89634 -33.99835 -33.25263 -32.28018 -31.68504 -31.61384 -28.70400 -28.18063 -26.93718 -25.78005 -24.53583 -23.91804 -23.26460 -21.67273 -21.02003 -20.86491 -19.88563 -19.84896 -17.80444 -17.71486 -16.82455 -16.57641 -16.45101 -16.12714 -15.91154 -15.88414 -15.58558 -15.48180 -15.34873 -15.28216 -14.88199 -14.70668 -14.27840 -13.96621 -13.77463 -13.67193 -13.49952 -13.19584 -13.10150 -12.97022 -12.84415 -12.64552 -12.57627 -12.52288 -12.44026 -12.43325 -12.18518 -12.11794 -11.91000 -11.87027 -11.66237 -11.54581 -11.39858 -11.36064 -11.07555 -10.26507 -9.99740 -9.33723 -9.16612 -9.13819 -8.46023 -5.94575 1.39085 1.40591 1.51577 2.06418 2.28367 2.77505 2.87768 2.92322 3.20569 3.39400 3.77987 3.83593 3.95055 3.97928 4.05940 4.11215 4.20291 4.21658 4.28842 4.36109 4.41115 4.42712 4.45425 4.50640 4.50957 4.51255 4.56623 4.61800 4.70478 4.76519 4.77012 4.85829 4.87562 4.92930 4.96802 4.97035 4.99342 5.04957 5.07757 5.11932 5.17868 5.26659 5.31962 5.38803 5.40724 5.41787 5.89884 6.01614 6.04393 6.12164 6.21209 6.24899 6.29813 6.61787 7.13643 7.57480 8.13851 8.71109 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.002071 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.304237 B =13515.598521 C =14306.927813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.142 4.142 4 N -0.548 5.548 5 C 0.060 3.940 6 C 0.053 3.947 7 N -0.527 5.527 8 C 0.093 3.907 9 C -0.130 4.130 10 C 0.063 3.937 11 N -0.535 5.535 12 C 0.059 3.941 13 C 0.441 3.559 14 O -0.614 6.614 15 N -0.575 5.575 16 C -0.332 4.332 17 H 0.077 0.923 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.992 3.008 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.273 1.273 24 C 0.057 3.943 25 C -0.098 4.098 26 C 0.054 3.946 27 C 0.063 3.937 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.044 0.956 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.062 0.938 52 H 0.027 0.973 53 H 0.083 0.917 54 H 0.084 0.916 55 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 -0.722 -25.822 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.200 4.200 4 N -0.274 5.274 5 C -0.068 4.068 6 C -0.075 4.075 7 N -0.251 5.251 8 C -0.016 4.016 9 C -0.169 4.169 10 C -0.066 4.066 11 N -0.260 5.260 12 C -0.073 4.073 13 C 0.228 3.772 14 O -0.501 6.501 15 N -0.213 5.213 16 C -0.461 4.461 17 H 0.095 0.905 18 C -0.214 4.214 19 N -0.561 5.561 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.194 1.194 23 H -0.198 1.198 24 C -0.071 4.071 25 C -0.136 4.136 26 C -0.074 4.074 27 C -0.065 4.065 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.049 0.951 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.129 0.871 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.062 0.938 49 H 0.106 0.894 50 H 0.110 0.890 51 H 0.080 0.920 52 H 0.045 0.955 53 H 0.102 0.898 54 H 0.102 0.898 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.191 0.363 -25.915 27.849 hybrid contribution -0.033 -0.504 1.508 1.590 sum -10.224 -0.141 -24.407 26.463 Atomic orbital electron populations 1.21920 0.93536 1.02317 1.02515 1.21669 0.96239 0.95207 0.90197 1.21838 1.00958 0.94904 1.02255 1.62236 1.05780 1.19807 1.39591 1.22200 0.99663 0.88523 0.96378 1.22220 0.87737 1.00490 0.97073 1.62500 1.05942 1.19328 1.37288 1.21731 0.96481 0.96834 0.86556 1.22072 0.99708 0.99838 0.95314 1.21990 0.87013 0.98590 0.98977 1.61475 1.12239 1.49477 1.02813 1.21708 1.02162 0.94309 0.89080 1.20821 0.82776 0.89525 0.84082 1.90465 1.49046 1.27695 1.82845 1.41936 1.52978 1.17645 1.08698 1.19592 1.37807 0.98546 0.90173 0.90481 1.26029 0.95931 0.99161 1.00247 1.69666 1.39109 1.22845 1.24510 0.85004 0.78630 0.77817 0.76971 1.19780 1.19411 1.19788 1.22201 1.01755 0.93804 0.89342 1.21581 0.93741 1.01588 0.96719 1.22202 0.99403 0.89128 0.96710 1.22133 0.87916 1.00149 0.96342 0.92549 0.90948 0.92062 0.94235 0.92800 0.90940 0.92801 0.94292 0.88905 0.89384 0.95125 0.89559 0.92888 0.91855 0.95028 0.92601 0.91700 0.87102 0.77042 0.91328 0.93779 0.89364 0.88962 0.91966 0.95518 0.89847 0.89796 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.66 71.98 0.62 -1.12 16 2 C 0.07 1.08 2.68 44.91 0.12 1.20 16 3 C -0.14 -1.92 9.10 71.98 0.66 -1.26 16 4 N -0.55 -9.87 4.58 -870.44 -3.98 -13.86 16 5 C 0.06 1.00 5.09 86.31 0.44 1.44 16 6 C 0.05 1.00 5.26 86.31 0.45 1.46 16 7 N -0.53 -10.87 4.70 -869.98 -4.09 -14.96 16 8 C 0.09 2.05 2.30 45.00 0.10 2.15 16 9 C -0.13 -3.69 4.68 30.65 0.14 -3.55 16 10 C 0.06 2.12 5.11 86.32 0.44 2.56 16 11 N -0.53 -17.71 4.40 -900.94 -3.96 -21.67 16 12 C 0.06 2.08 5.45 85.56 0.47 2.55 16 13 C 0.44 21.45 7.46 87.66 0.65 22.11 16 14 O -0.61 -34.67 13.90 -3.08 -0.04 -34.71 16 15 N -0.57 -30.05 5.29 -306.98 -1.62 -31.68 16 16 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 17 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 19 N -0.92 -50.20 13.05 21.66 0.28 -49.91 16 20 Si 0.99 43.60 29.55 68.60 2.03 45.62 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C 0.06 1.34 5.46 86.33 0.47 1.82 16 25 C -0.10 -2.10 5.25 30.65 0.16 -1.94 16 26 C 0.05 1.16 4.82 86.31 0.42 1.58 16 27 C 0.06 1.16 5.40 86.31 0.47 1.63 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.68 6.24 -2.39 -0.01 0.67 16 31 H 0.04 0.57 8.13 -2.39 -0.02 0.55 16 32 H 0.05 0.74 6.46 -2.39 -0.02 0.73 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.09 1.33 6.00 -2.39 -0.01 1.31 16 37 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 38 H 0.03 0.69 6.67 -2.39 -0.02 0.67 16 39 H 0.09 1.80 8.11 -2.38 -0.02 1.78 16 40 H 0.05 1.76 6.33 -2.39 -0.02 1.74 16 41 H 0.06 1.74 6.73 -2.39 -0.02 1.72 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 2.42 5.78 -2.39 -0.01 2.40 16 44 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 45 H 0.11 3.44 7.99 -2.39 -0.02 3.42 16 46 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 47 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.09 1.89 8.02 -2.38 -0.02 1.87 16 50 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.06 1.49 6.25 -2.39 -0.01 1.48 16 52 H 0.03 0.71 6.41 -2.39 -0.02 0.69 16 53 H 0.08 1.79 6.13 -2.39 -0.01 1.77 16 54 H 0.08 1.46 6.30 -2.39 -0.02 1.45 16 55 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -66.96 403.09 -4.35 -71.32 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.14 Total: 37.84 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 6.89 Total: 12.01 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -13.37 Total: -132.08 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.04 Total: -34.71 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -66.96 -4.35 -71.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116397085.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.705 kcal (2) G-P(sol) polarization free energy of solvation -66.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds