Wall clock time and date at job start Tue Mar 31 2020 22:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36063 * 117.00000 * 2 1 4 4 C 1.38740 * 120.86618 * 89.99691 * 3 2 1 5 5 Cl 1.73603 * 120.44055 * 0.04902 * 4 3 2 6 6 N 1.32642 * 119.12007 * 180.02562 * 4 3 2 7 7 C 1.31880 * 121.00098 * 0.02562 * 6 4 3 8 8 Cl 1.73600 * 119.03989 * 179.97438 * 7 6 4 9 9 N 1.31895 * 121.91713 * 0.27447 * 7 6 4 10 10 C 1.32933 * 120.76520 * 359.44458 * 9 7 6 11 11 N 1.38961 * 120.53223 * 180.27826 * 10 9 7 12 12 C 1.38398 * 120.00237 * 355.88772 * 11 10 9 13 13 C 1.38963 * 119.99223 * 58.06932 * 12 11 10 14 14 H 1.07998 * 119.99652 * 203.78457 * 13 12 11 15 15 C 1.40847 * 120.00390 * 23.79070 * 13 12 11 16 16 N 1.30329 * 120.00146 * 7.07550 * 15 13 12 17 17 Si 1.86807 * 119.99988 * 187.07974 * 15 13 12 18 18 H 1.48505 * 109.47104 * 59.99889 * 17 15 13 19 19 H 1.48502 * 109.47086 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46979 * 299.99793 * 17 15 13 21 21 C 1.41138 * 120.00276 * 238.06665 * 12 11 10 22 22 C 1.43203 * 119.99857 * 185.42691 * 21 12 11 23 23 N 7.53513 * 92.39278 * 295.75231 * 2 1 3 24 24 C 1.43200 * 119.99980 * 5.42678 * 21 12 11 25 25 N 4.90325 * 58.24865 * 292.20057 * 2 1 3 26 26 H 1.09006 * 109.46740 * 59.99725 * 1 2 3 27 27 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47358 * 300.00416 * 1 2 3 29 29 H 0.96998 * 119.99956 * 175.90272 * 11 10 9 30 30 H 0.96996 * 120.00074 * 185.00142 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 2.3698 1.8466 1.1909 5 17 1.9924 1.1034 2.7138 6 7 2.9712 3.0281 1.1505 7 6 3.2630 3.6028 -0.0001 8 17 4.0499 5.1502 0.0064 9 7 2.9690 3.0388 -1.1556 10 6 2.3711 1.8524 -1.2006 11 7 2.0688 1.2600 -2.4207 12 6 2.3124 1.9417 -3.6002 13 6 3.5980 2.3774 -3.8980 14 1 3.7440 3.2056 -4.5756 15 6 4.7105 1.7389 -3.3162 16 7 4.5447 0.6562 -2.6099 17 14 6.4236 2.4439 -3.5570 18 1 6.4732 3.8226 -3.0074 19 1 7.4131 1.5931 -2.8484 20 1 6.7461 2.4768 -5.0062 21 6 1.2553 2.1944 -4.5006 22 6 1.5258 2.7956 -5.7718 23 7 1.7436 3.2710 -6.7808 24 6 -0.0877 1.8496 -4.1428 25 7 -1.1513 1.5754 -3.8603 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6869 0.3687 -2.4457 30 1 5.2995 0.2573 -2.1494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:48 Heat of formation + Delta-G solvation = 56.476405 kcal Electronic energy + Delta-G solvation = -24269.805118 eV Core-core repulsion = 20345.723035 eV Total energy + Delta-G solvation = -3924.082083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 339.003 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43769 -39.44355 -39.25129 -38.02811 -37.82739 -37.10315 -36.56302 -35.45566 -34.13679 -32.57690 -30.83760 -28.83213 -27.99330 -25.60936 -24.88246 -23.10204 -20.99261 -20.12131 -19.36006 -18.90402 -18.49954 -17.89303 -17.29984 -17.06977 -16.56922 -15.90912 -15.83368 -15.30866 -15.07269 -14.62744 -14.40398 -13.92878 -13.84920 -13.55045 -13.52094 -13.42044 -13.39339 -13.12918 -13.04421 -12.77447 -12.72009 -12.59759 -12.49797 -12.17287 -12.14682 -11.93088 -11.71736 -11.52609 -10.75095 -10.29026 -10.02359 -9.45324 -8.80583 -7.13884 -0.58337 -0.18698 0.01872 0.59520 0.68160 1.34606 1.45652 1.52560 1.89646 2.04179 2.06962 2.19167 2.22811 2.48831 2.58603 2.64880 3.20130 3.31487 3.40271 3.76770 3.85633 4.27696 4.38063 4.39154 4.58282 4.64662 4.75215 5.22778 5.34778 5.49760 5.93567 6.03136 6.15021 6.34922 6.50518 6.90066 7.14930 7.33379 7.65235 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.006214 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.473873 B = 4504.593394 C = 5902.225634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C -0.050 4.050 4 C 0.235 3.765 5 Cl 0.018 6.982 6 N -0.547 5.547 7 C 0.406 3.594 8 Cl 0.045 6.955 9 N -0.538 5.538 10 C 0.478 3.522 11 N -0.602 5.602 12 C 0.362 3.638 13 C -0.334 4.334 14 H 0.107 0.893 15 C 0.058 3.942 16 N -0.731 5.731 17 Si 0.960 3.040 18 H -0.247 1.247 19 H -0.258 1.258 20 H -0.253 1.253 21 C -0.319 4.319 22 C 0.330 3.670 23 N -0.554 5.554 24 C 0.313 3.687 25 N -0.547 5.547 26 H 0.034 0.966 27 H 0.127 0.873 28 H 0.057 0.943 29 H 0.422 0.578 30 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -1.848 12.313 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C -0.106 4.106 4 C 0.066 3.934 5 Cl 0.047 6.953 6 N -0.274 5.274 7 C 0.111 3.889 8 Cl 0.073 6.927 9 N -0.266 5.266 10 C 0.232 3.768 11 N -0.226 5.226 12 C 0.259 3.741 13 C -0.361 4.361 14 H 0.125 0.875 15 C -0.173 4.173 16 N -0.350 5.350 17 Si 0.779 3.221 18 H -0.170 1.170 19 H -0.181 1.181 20 H -0.176 1.176 21 C -0.338 4.338 22 C 0.024 3.976 23 N -0.237 5.237 24 C 0.007 3.993 25 N -0.231 5.231 26 H 0.053 0.947 27 H 0.145 0.855 28 H 0.076 0.924 29 H 0.262 0.738 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.501 -1.041 11.281 11.858 hybrid contribution 0.288 -0.676 0.258 0.779 sum 3.789 -1.717 11.539 12.266 Atomic orbital electron populations 1.23340 0.77614 1.05439 1.00782 1.86200 1.21088 1.21242 1.93648 1.19052 1.09104 0.92302 0.90174 1.22052 0.93743 0.89190 0.88463 1.98415 1.91303 1.78686 1.26895 1.67216 1.19831 1.10647 1.29687 1.22537 0.92440 0.90649 0.83293 1.98426 1.76121 1.19905 1.98240 1.67534 1.18815 1.11394 1.28852 1.18405 0.86173 0.86327 0.85866 1.41328 1.62126 1.18459 1.00650 1.16657 0.90584 0.85052 0.81785 1.20301 0.89755 1.09911 1.16150 0.87521 1.26938 1.05624 0.93025 0.91719 1.69411 1.37959 1.12077 1.15536 0.85457 0.74997 0.80782 0.80891 1.17003 1.18147 1.17644 1.12786 0.85502 1.40220 0.95280 1.24787 0.91626 0.90159 0.91076 1.81075 1.09479 1.19266 1.13875 1.25190 0.91739 0.90535 0.91846 1.80977 1.11825 1.19068 1.11185 0.94707 0.85463 0.92425 0.73814 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 11.13 113.37 1.26 1.78 16 2 O -0.31 -8.74 9.34 -94.26 -0.88 -9.62 16 3 C -0.05 -1.58 5.80 22.78 0.13 -1.45 16 4 C 0.23 7.16 7.34 84.69 0.62 7.78 16 5 Cl 0.02 0.45 28.76 -2.72 -0.08 0.37 16 6 N -0.55 -17.59 10.39 -181.55 -1.89 -19.48 16 7 C 0.41 13.56 8.18 180.83 1.48 15.03 16 8 Cl 0.05 1.29 29.26 -2.72 -0.08 1.21 16 9 N -0.54 -19.54 8.44 -187.84 -1.59 -21.13 16 10 C 0.48 16.89 6.04 133.10 0.80 17.69 16 11 N -0.60 -21.72 3.34 -183.91 -0.61 -22.33 16 12 C 0.36 14.31 5.58 38.99 0.22 14.53 16 13 C -0.33 -13.09 7.50 23.08 0.17 -12.92 16 14 H 0.11 4.30 7.19 -2.91 -0.02 4.27 16 15 C 0.06 2.06 4.71 85.55 0.40 2.47 16 16 N -0.73 -25.97 11.02 21.98 0.24 -25.72 16 17 Si 0.96 28.91 29.58 68.60 2.03 30.94 16 18 H -0.25 -7.50 7.11 99.48 0.71 -6.80 16 19 H -0.26 -7.30 7.11 99.48 0.71 -6.60 16 20 H -0.25 -7.71 7.11 99.48 0.71 -7.00 16 21 C -0.32 -13.34 5.88 -20.07 -0.12 -13.46 16 22 C 0.33 14.68 14.00 88.33 1.24 15.92 16 23 N -0.55 -25.73 18.54 19.01 0.35 -25.37 16 24 C 0.31 13.29 14.82 88.35 1.31 14.60 16 25 N -0.55 -23.79 18.52 18.98 0.35 -23.44 16 26 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.13 2.23 8.14 -2.39 -0.02 2.22 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.42 14.48 8.27 -92.71 -0.77 13.71 16 30 H 0.31 10.20 8.29 -92.71 -0.77 9.43 16 Total: -1.00 -47.13 327.69 5.88 -41.25 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.51 Total: 11.35 kcal Atomic # 6 Polarization: 54.45 SS G_CDS: 7.52 Total: 61.98 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -3.14 Total: -137.47 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.88 Total: -9.62 kcal Atomic # 14 Polarization: 28.91 SS G_CDS: 2.03 Total: 30.94 kcal Atomic # 17 Polarization: 1.74 SS G_CDS: -0.16 Total: 1.58 kcal Total: -47.13 5.88 -41.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.728 kcal (2) G-P(sol) polarization free energy of solvation -47.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds