Wall clock time and date at job start Tue Mar 31 2020 22:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00329 * 2 1 4 4 H 1.48492 * 109.47119 * 269.99837 * 3 2 1 5 5 H 1.48501 * 109.46871 * 29.99812 * 3 2 1 6 6 H 1.48500 * 109.47092 * 149.99863 * 3 2 1 7 7 C 1.37878 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00264 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00139 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.39828 * 66.45988 * 9 7 2 11 11 O 1.42105 * 106.40247 * 293.54052 * 9 7 2 12 12 N 1.65596 * 107.21940 * 180.02562 * 9 7 2 13 13 C 1.39006 * 120.00234 * 66.48156 * 12 9 7 14 14 C 1.39312 * 120.59637 * 68.29049 * 13 12 9 15 15 Cl 1.73601 * 119.61903 * 0.04370 * 14 13 12 16 16 N 1.31662 * 120.75544 * 180.02562 * 14 13 12 17 17 C 1.32060 * 122.14302 * 0.02562 * 16 14 13 18 18 Cl 1.73605 * 119.43962 * 180.02562 * 17 16 14 19 19 C 1.38005 * 121.11696 * 359.97438 * 17 16 14 20 20 C 1.40014 * 119.10404 * 0.26128 * 19 17 16 21 21 C 1.47734 * 120.96617 * 179.72586 * 20 19 17 22 22 N 1.34782 * 119.99771 * 5.24148 * 21 20 19 23 23 O 1.21557 * 120.00257 * 185.24720 * 21 20 19 24 24 H 0.97004 * 119.99349 * 0.02562 * 1 2 3 25 25 H 0.97004 * 119.99763 * 246.48829 * 12 9 7 26 26 H 1.08003 * 120.44956 * 179.97438 * 19 17 16 27 27 H 0.97001 * 119.99715 * 0.02562 * 22 21 20 28 28 H 0.97001 * 120.00054 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4507 -2.7950 1.2501 12 7 2.2481 -3.9355 0.0019 13 6 3.0719 -4.1189 1.1065 14 6 2.5458 -4.5640 2.3173 15 17 0.8461 -4.8928 2.4451 16 7 3.3232 -4.7383 3.3656 17 6 4.6220 -4.5033 3.3240 18 17 5.5812 -4.7576 4.7485 19 6 5.2299 -4.0600 2.1670 20 6 4.4489 -3.8531 1.0236 21 6 5.0559 -3.3735 -0.2350 22 7 6.3929 -3.2296 -0.3263 23 8 4.3496 -3.1087 -1.1882 24 1 -0.4849 0.8401 -0.0004 25 1 2.3320 -4.5194 -0.7681 26 1 6.2930 -3.8708 2.1452 27 1 6.9565 -3.4412 0.4342 28 1 6.7914 -2.9144 -1.1526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192943223.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:52 Heat of formation + Delta-G solvation = -81.842859 kcal Electronic energy + Delta-G solvation = -23307.483558 eV Core-core repulsion = 19344.721608 eV Total energy + Delta-G solvation = -3962.761950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 338.968 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87826 -38.91421 -37.00381 -36.20342 -35.36449 -35.01869 -34.04019 -33.99831 -33.06603 -31.98666 -29.17260 -26.11612 -25.19773 -23.37734 -21.16835 -19.20448 -18.61812 -18.08549 -17.55220 -17.05965 -16.44169 -16.31559 -15.81966 -15.12691 -14.95166 -14.78293 -14.31630 -14.02750 -13.87410 -13.63998 -13.06901 -12.31249 -12.09359 -11.65387 -11.45965 -11.23183 -11.18684 -10.98247 -10.78717 -10.60919 -10.47368 -10.37096 -10.26014 -9.95875 -9.79932 -9.76513 -9.27997 -9.18608 -8.90066 -8.34525 -6.68833 -5.28342 0.38144 0.56879 1.42869 2.11444 2.20476 2.73518 3.07529 3.13348 3.19005 3.22890 3.46404 4.00056 4.22773 4.39211 4.52447 4.66226 4.68998 4.76992 5.12226 5.44449 5.62557 5.83032 6.36294 6.60278 6.66194 7.14458 7.27269 7.34504 7.63259 8.00068 8.16182 8.91172 10.25592 Molecular weight = 338.97amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.005993 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.502965 B = 4670.607855 C = 5397.498980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.135 3.865 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.264 1.264 7 C -1.005 5.005 8 H 0.101 0.899 9 S 2.697 3.303 10 O -0.991 6.991 11 O -0.980 6.980 12 N -1.059 6.059 13 C 0.201 3.799 14 C 0.190 3.810 15 Cl 0.039 6.961 16 N -0.448 5.448 17 C 0.174 3.826 18 Cl -0.021 7.021 19 C -0.119 4.119 20 C -0.084 4.084 21 C 0.563 3.437 22 N -0.850 5.850 23 O -0.488 6.488 24 H 0.291 0.709 25 H 0.422 0.578 26 H 0.155 0.845 27 H 0.399 0.601 28 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.877 -8.690 4.742 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.083 4.083 3 Si 0.744 3.256 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.189 1.189 7 C -1.139 5.139 8 H 0.120 0.880 9 S 2.798 3.202 10 O -0.982 6.982 11 O -0.970 6.970 12 N -0.806 5.806 13 C 0.097 3.903 14 C 0.021 3.979 15 Cl 0.068 6.932 16 N -0.162 5.162 17 C 0.010 3.990 18 Cl 0.007 6.993 19 C -0.141 4.141 20 C -0.098 4.098 21 C 0.346 3.654 22 N -0.416 5.416 23 O -0.360 6.360 24 H 0.101 0.899 25 H 0.260 0.740 26 H 0.173 0.827 27 H 0.228 0.772 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.610 -8.860 5.189 16.261 hybrid contribution 1.890 1.297 -0.731 2.406 sum 14.499 -7.563 4.458 16.950 Atomic orbital electron populations 1.69890 1.06661 1.30673 1.40270 1.24703 0.94450 1.00614 0.88536 0.86181 0.80108 0.80179 0.79182 1.19148 1.19932 1.18854 1.30378 1.06014 1.11040 1.66498 0.88031 1.01308 0.72098 0.73269 0.73537 1.93391 1.72129 1.87085 1.45550 1.93513 1.71915 1.86865 1.44678 1.53941 1.53772 1.50858 1.22056 1.17762 0.89231 0.94836 0.88493 1.22175 0.90294 0.96580 0.88895 1.98494 1.04720 1.92138 1.97822 1.66180 1.04362 1.15638 1.30027 1.21119 0.88745 1.00232 0.88891 1.98410 1.67315 1.95044 1.38496 1.21864 1.01486 1.00080 0.90702 1.20570 0.93593 1.00745 0.94925 1.17672 0.82646 0.78240 0.86825 1.43642 1.06988 1.71496 1.19513 1.90966 1.60704 1.46839 1.37511 0.89911 0.74030 0.82720 0.77215 0.75911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.88 13.19 55.43 0.73 -24.15 15 2 C 0.13 3.80 5.46 -17.82 -0.10 3.70 15 3 Si 0.92 21.00 29.54 -169.99 -5.02 15.97 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 15 5 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.26 -5.81 7.11 56.52 0.40 -5.41 15 7 C -1.01 -28.11 9.70 30.60 0.30 -27.82 15 8 H 0.10 2.68 7.24 -52.49 -0.38 2.30 15 9 S 2.70 71.73 4.93 -107.50 -0.53 71.20 15 10 O -0.99 -29.42 18.02 -57.17 -1.03 -30.45 15 11 O -0.98 -26.98 13.59 -57.17 -0.78 -27.76 15 12 N -1.06 -21.76 3.56 32.67 0.12 -21.64 15 13 C 0.20 3.69 5.95 -83.36 -0.50 3.19 15 14 C 0.19 3.52 7.02 -17.22 -0.12 3.40 15 15 Cl 0.04 0.77 24.87 -51.86 -1.29 -0.52 15 16 N -0.45 -7.45 10.28 -7.39 -0.08 -7.53 15 17 C 0.17 2.35 7.26 -17.54 -0.13 2.22 15 18 Cl -0.02 -0.23 29.09 -51.86 -1.51 -1.74 15 19 C -0.12 -1.38 9.35 -39.00 -0.36 -1.74 15 20 C -0.08 -1.25 5.92 -104.50 -0.62 -1.87 15 21 C 0.56 8.21 8.04 -12.38 -0.10 8.11 15 22 N -0.85 -7.50 8.83 30.50 0.27 -7.23 15 23 O -0.49 -9.28 15.28 5.32 0.08 -9.19 15 24 H 0.29 7.71 8.31 -40.82 -0.34 7.37 15 25 H 0.42 7.62 8.66 -34.47 -0.30 7.32 15 26 H 0.16 1.03 6.57 -52.48 -0.34 0.69 15 27 H 0.40 2.09 6.99 -40.82 -0.29 1.81 15 28 H 0.41 3.05 8.93 -40.82 -0.36 2.68 15 LS Contribution 297.91 15.07 4.49 4.49 Total: -1.00 -36.68 297.91 -6.98 -43.66 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -0.81 Total: 5.68 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.63 Total: -10.80 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 1.04 Total: -60.55 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -1.73 Total: -67.40 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 71.73 SS G_CDS: -0.53 Total: 71.20 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -2.80 Total: -2.26 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.68 -6.98 -43.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943223.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.182 kcal (2) G-P(sol) polarization free energy of solvation -36.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds