Wall clock time and date at job start Tue Mar 31 2020 22:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00329 * 2 1 4 4 H 1.48492 * 109.47119 * 269.99837 * 3 2 1 5 5 H 1.48501 * 109.46871 * 29.99812 * 3 2 1 6 6 H 1.48500 * 109.47092 * 149.99863 * 3 2 1 7 7 C 1.37878 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00264 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00139 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.39828 * 66.45988 * 9 7 2 11 11 O 1.42105 * 106.40247 * 293.54052 * 9 7 2 12 12 N 1.65596 * 107.21940 * 180.02562 * 9 7 2 13 13 C 1.39006 * 120.00234 * 66.48156 * 12 9 7 14 14 C 1.39312 * 120.59637 * 68.29049 * 13 12 9 15 15 Cl 1.73601 * 119.61903 * 0.04370 * 14 13 12 16 16 N 1.31662 * 120.75544 * 180.02562 * 14 13 12 17 17 C 1.32060 * 122.14302 * 0.02562 * 16 14 13 18 18 Cl 1.73605 * 119.43962 * 180.02562 * 17 16 14 19 19 C 1.38005 * 121.11696 * 359.97438 * 17 16 14 20 20 C 1.40014 * 119.10404 * 0.26128 * 19 17 16 21 21 C 1.47734 * 120.96617 * 179.72586 * 20 19 17 22 22 N 1.34782 * 119.99771 * 5.24148 * 21 20 19 23 23 O 1.21557 * 120.00257 * 185.24720 * 21 20 19 24 24 H 0.97004 * 119.99349 * 0.02562 * 1 2 3 25 25 H 0.97004 * 119.99763 * 246.48829 * 12 9 7 26 26 H 1.08003 * 120.44956 * 179.97438 * 19 17 16 27 27 H 0.97001 * 119.99715 * 0.02562 * 22 21 20 28 28 H 0.97001 * 120.00054 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4507 -2.7950 1.2501 12 7 2.2481 -3.9355 0.0019 13 6 3.0719 -4.1189 1.1065 14 6 2.5458 -4.5640 2.3173 15 17 0.8461 -4.8928 2.4451 16 7 3.3232 -4.7383 3.3656 17 6 4.6220 -4.5033 3.3240 18 17 5.5812 -4.7576 4.7485 19 6 5.2299 -4.0600 2.1670 20 6 4.4489 -3.8531 1.0236 21 6 5.0559 -3.3735 -0.2350 22 7 6.3929 -3.2296 -0.3263 23 8 4.3496 -3.1087 -1.1882 24 1 -0.4849 0.8401 -0.0004 25 1 2.3320 -4.5194 -0.7681 26 1 6.2930 -3.8708 2.1452 27 1 6.9565 -3.4412 0.4342 28 1 6.7914 -2.9144 -1.1526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192943223.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:51 Heat of formation + Delta-G solvation = -114.965672 kcal Electronic energy + Delta-G solvation = -23308.919871 eV Core-core repulsion = 19344.721608 eV Total energy + Delta-G solvation = -3964.198263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 338.968 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.09146 -40.07544 -38.13737 -37.53367 -37.37592 -36.54382 -36.13357 -35.16477 -35.12565 -33.10607 -30.50597 -28.24910 -26.39233 -24.64266 -22.28687 -21.16171 -19.96016 -19.50304 -18.89860 -18.53140 -18.35434 -17.48849 -17.02425 -16.93788 -16.19485 -16.08381 -15.92092 -15.59123 -15.50471 -15.06726 -14.35075 -14.05220 -13.54157 -13.33633 -13.17562 -13.02331 -12.77496 -12.52715 -12.46142 -12.33225 -12.24008 -11.84809 -11.67581 -11.58687 -11.25039 -11.14267 -10.88667 -10.70447 -10.59985 -9.79028 -8.74661 -7.44970 -0.84316 -0.65166 0.26389 0.31879 0.85826 1.30069 1.32105 1.46568 1.56548 2.17327 2.19259 2.30123 2.58413 2.64481 3.26798 3.33993 3.49055 3.63407 3.74961 3.90653 4.23985 4.52874 4.65217 4.93172 5.28459 5.82881 5.92236 5.98264 6.13930 6.33750 6.78981 7.24130 8.21665 Molecular weight = 338.97amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.005993 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.502965 B = 4670.607855 C = 5397.498980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.247 1.247 7 C -1.024 5.024 8 H 0.112 0.888 9 S 2.706 3.294 10 O -1.037 7.037 11 O -0.999 6.999 12 N -1.048 6.048 13 C 0.165 3.835 14 C 0.171 3.829 15 Cl 0.010 6.990 16 N -0.462 5.462 17 C 0.173 3.827 18 Cl 0.012 6.988 19 C -0.087 4.087 20 C -0.081 4.081 21 C 0.561 3.439 22 N -0.815 5.815 23 O -0.542 6.542 24 H 0.298 0.702 25 H 0.429 0.571 26 H 0.214 0.786 27 H 0.420 0.580 28 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.147 -7.920 5.872 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.170 1.170 7 C -1.158 5.158 8 H 0.130 0.870 9 S 2.808 3.192 10 O -1.027 7.027 11 O -0.989 6.989 12 N -0.799 5.799 13 C 0.062 3.938 14 C 0.003 3.997 15 Cl 0.039 6.961 16 N -0.177 5.177 17 C 0.008 3.992 18 Cl 0.041 6.959 19 C -0.109 4.109 20 C -0.096 4.096 21 C 0.343 3.657 22 N -0.383 5.383 23 O -0.418 6.418 24 H 0.108 0.892 25 H 0.268 0.732 26 H 0.231 0.769 27 H 0.253 0.747 28 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 16.932 -8.117 6.345 19.820 hybrid contribution 0.821 0.919 -0.935 1.547 sum 17.752 -7.198 5.410 19.906 Atomic orbital electron populations 1.69980 1.08535 1.32197 1.41522 1.25925 0.95371 1.04970 0.87668 0.85225 0.79359 0.75230 0.79973 1.18162 1.18366 1.17027 1.30706 1.06674 1.12054 1.66362 0.87024 1.00700 0.72445 0.73696 0.72363 1.93321 1.74097 1.87997 1.47294 1.93482 1.73118 1.87382 1.44933 1.53073 1.53706 1.49813 1.23308 1.17986 0.90577 0.97550 0.87641 1.22042 0.89542 0.98434 0.89670 1.98472 1.07214 1.92493 1.97923 1.66149 1.05846 1.16095 1.29588 1.21630 0.88033 0.98869 0.90648 1.98432 1.65912 1.94726 1.36864 1.22401 1.03690 0.96494 0.88265 1.20739 0.92364 1.00001 0.96450 1.17717 0.84063 0.78009 0.85888 1.43370 1.04980 1.69067 1.20881 1.90959 1.62307 1.49527 1.38998 0.89160 0.73163 0.76899 0.74664 0.74549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.73 13.19 21.45 0.28 -53.44 15 2 C 0.07 4.17 5.46 84.65 0.46 4.63 15 3 Si 0.98 42.11 29.54 68.60 2.03 44.13 15 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 5 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 6 H -0.25 -9.76 7.11 99.48 0.71 -9.06 15 7 C -1.02 -58.02 9.70 67.73 0.66 -57.36 15 8 H 0.11 5.88 7.24 -2.91 -0.02 5.86 15 9 S 2.71 149.53 4.93 -56.49 -0.28 149.25 15 10 O -1.04 -64.64 18.02 -128.00 -2.31 -66.95 15 11 O -1.00 -57.47 13.59 -128.00 -1.74 -59.21 15 12 N -1.05 -44.48 3.56 -50.56 -0.18 -44.66 15 13 C 0.17 6.05 5.95 38.81 0.23 6.28 15 14 C 0.17 6.39 7.02 84.98 0.60 6.99 15 15 Cl 0.01 0.41 24.87 -2.72 -0.07 0.35 15 16 N -0.46 -14.83 10.28 -177.29 -1.82 -16.65 15 17 C 0.17 4.11 7.26 84.60 0.61 4.72 15 18 Cl 0.01 0.21 29.09 -2.72 -0.08 0.13 15 19 C -0.09 -1.63 9.35 22.65 0.21 -1.42 15 20 C -0.08 -2.22 5.92 -19.79 -0.12 -2.34 15 21 C 0.56 14.94 8.04 86.75 0.70 15.64 15 22 N -0.82 -10.81 8.83 -175.68 -1.55 -12.36 15 23 O -0.54 -20.24 15.28 -3.89 -0.06 -20.30 15 24 H 0.30 16.17 8.31 -92.71 -0.77 15.40 15 25 H 0.43 16.34 8.66 -96.74 -0.84 15.50 15 26 H 0.21 1.33 6.57 -2.91 -0.02 1.31 15 27 H 0.42 1.86 6.99 -92.71 -0.65 1.22 15 28 H 0.42 4.53 8.93 -92.71 -0.83 3.71 15 Total: -1.00 -84.69 297.91 -3.42 -88.11 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -1.00 Total: 14.46 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 3.35 Total: -22.86 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -3.27 Total: -127.11 kcal Atomic # 8 Polarization: -142.36 SS G_CDS: -4.10 Total: -146.46 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 149.53 SS G_CDS: -0.28 Total: 149.25 kcal Atomic # 17 Polarization: 0.63 SS G_CDS: -0.15 Total: 0.48 kcal Total: -84.69 -3.42 -88.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943223.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.855 kcal (2) G-P(sol) polarization free energy of solvation -84.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds