Wall clock time and date at job start Tue Mar 31 2020 22:49:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45204 * 1
3 3 C 1.34232 * 116.99983 * 2 1
4 4 O 1.20826 * 119.99995 * 0.02562 * 3 2 1
5 5 C 1.50695 * 120.00206 * 180.02562 * 3 2 1
6 6 H 1.08998 * 110.30370 * 52.16076 * 5 3 2
7 7 S 1.83560 * 110.43048 * 174.39144 * 5 3 2
8 8 C 1.84245 * 94.86293 * 137.42924 * 7 5 3
9 9 C 1.55398 * 99.76625 * 326.85744 * 8 7 5
10 10 H 1.09008 * 109.46685 * 280.33137 * 9 8 7
11 11 C 1.50696 * 109.47631 * 160.38526 * 9 8 7
12 12 O 1.20820 * 120.00324 * 239.93913 * 11 9 8
13 13 O 1.34233 * 119.99443 * 59.93779 * 11 9 8
14 14 C 1.45199 * 116.99598 * 180.02562 * 13 11 9
15 15 N 1.46139 * 109.52388 * 40.35530 * 9 8 7
16 16 S 1.65597 * 122.50153 * 149.52826 * 15 9 8
17 17 O 1.42104 * 106.40065 * 23.27958 * 16 15 9
18 18 O 1.42096 * 106.40190 * 156.19616 * 16 15 9
19 19 C 1.76197 * 107.21971 * 269.73947 * 16 15 9
20 20 H 1.08000 * 119.99814 * 359.97438 * 19 16 15
21 21 C 1.37871 * 120.00007 * 179.97438 * 19 16 15
22 22 N 1.31516 * 120.00086 * 179.97438 * 21 19 16
23 23 Si 1.86800 * 120.00086 * 0.02562 * 21 19 16
24 24 H 1.48501 * 109.47188 * 89.99976 * 23 21 19
25 25 H 1.48504 * 109.47384 * 209.99678 * 23 21 19
26 26 H 1.48497 * 109.47077 * 329.99563 * 23 21 19
27 27 H 1.09002 * 109.47222 * 59.99774 * 1 2 3
28 28 H 1.08997 * 109.46989 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.46750 * 299.99757 * 1 2 3
30 30 H 1.09001 * 111.34824 * 84.48856 * 8 7 5
31 31 H 1.08993 * 111.34792 * 209.21799 * 8 7 5
32 32 H 1.09000 * 109.47296 * 180.02562 * 14 13 11
33 33 H 1.09010 * 109.46922 * 299.99495 * 14 13 11
34 34 H 1.09000 * 109.47671 * 59.99990 * 14 13 11
35 35 H 0.97006 * 120.00011 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 1 3.9765 0.6687 -0.8082
7 16 4.1165 3.0181 -0.1686
8 6 5.4472 2.8847 1.0987
9 6 4.7874 1.8643 2.0674
10 1 4.0676 2.3801 2.7031
11 6 5.8494 1.2281 2.9266
12 8 6.0153 0.0318 2.8954
13 8 6.6111 1.9907 3.7268
14 6 7.6145 1.3103 4.5259
15 7 4.1019 0.8304 1.2949
16 16 3.9347 -0.7241 1.8406
17 8 4.0442 -0.6663 3.2563
18 8 2.8050 -1.2655 1.1700
19 6 5.3338 -1.6306 1.2700
20 1 6.0913 -1.1384 0.6782
21 6 5.4614 -2.9681 1.5790
22 7 6.5053 -3.6448 1.1527
23 14 4.1507 -3.8196 2.6020
24 1 3.1095 -4.3814 1.7044
25 1 4.7709 -4.9164 3.3878
26 1 3.5296 -2.8380 3.5271
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 6.3662 2.4863 0.6686
31 1 5.6243 3.8412 1.5903
32 1 8.1579 2.0405 5.1255
33 1 7.1279 0.5902 5.1839
34 1 8.3105 0.7893 3.8685
35 1 6.5949 -4.5861 1.3698
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192961699.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:04
Heat of formation + Delta-G solvation = -185.448936 kcal
Electronic energy + Delta-G solvation = -27759.409391 eV
Core-core repulsion = 23592.862724 eV
Total energy + Delta-G solvation = -4166.546667 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 339.042 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.42588 -40.09444 -37.20365 -36.23364 -36.08908 -35.16789 -34.41605 -32.90882
-31.45913 -28.18767 -27.59391 -26.63999 -26.32247 -24.06175 -21.31933 -20.89962
-19.21840 -17.98795 -17.66371 -17.45566 -16.96823 -16.54473 -16.40018 -16.17403
-15.91487 -15.64936 -14.91089 -14.85767 -14.20486 -13.81269 -13.46069 -13.36799
-13.17505 -12.93989 -12.79015 -12.69668 -12.47437 -12.24300 -12.01187 -11.71063
-11.56680 -11.34612 -10.94382 -10.73093 -10.67712 -10.56915 -10.46777 -10.21038
-10.14028 -9.93653 -9.72413 -9.35114 -9.09203 -8.64240 -7.89871 -6.69394
-5.11460 1.23521 1.55761 1.89758 2.28734 2.56674 2.73998 3.03913
3.10291 3.20919 3.29537 3.90476 4.01287 4.23224 4.68218 4.76172
4.86220 4.88543 5.04252 5.22169 5.37017 5.37141 5.40665 5.45293
5.48232 5.53722 5.61368 5.74243 5.79792 5.82236 6.60297 6.63485
6.87525 7.58351 7.91959 8.07670 8.30535 8.82055 10.43637
Molecular weight = 339.04amu
Principal moments of inertia in cm(-1)
A = 0.010655 B = 0.008582 C = 0.005478
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2627.134694 B = 3262.036772 C = 5110.467465
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.286 6.286
3 C 0.450 3.550
4 O -0.491 6.491
5 C 0.198 3.802
6 H 0.141 0.859
7 S -0.183 6.183
8 C -0.076 4.076
9 C 0.163 3.837
10 H 0.121 0.879
11 C 0.423 3.577
12 O -0.409 6.409
13 O -0.360 6.360
14 C 0.038 3.962
15 N -0.985 5.985
16 S 2.671 3.329
17 O -0.990 6.990
18 O -0.973 6.973
19 C -0.967 4.967
20 H 0.116 0.884
21 C 0.155 3.845
22 N -0.830 5.830
23 Si 0.799 3.201
24 H -0.248 1.248
25 H -0.258 1.258
26 H -0.224 1.224
27 H 0.058 0.942
28 H 0.103 0.897
29 H 0.058 0.942
30 H 0.111 0.889
31 H 0.137 0.863
32 H 0.097 0.903
33 H 0.066 0.934
34 H 0.065 0.935
35 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.833 11.445 0.540 11.604
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.199 6.199
3 C 0.287 3.713
4 O -0.378 6.378
5 C -0.020 4.020
6 H 0.159 0.841
7 S 0.044 5.956
8 C -0.226 4.226
9 C 0.053 3.947
10 H 0.139 0.861
11 C 0.259 3.741
12 O -0.290 6.290
13 O -0.277 6.277
14 C -0.056 4.056
15 N -0.820 5.820
16 S 2.774 3.226
17 O -0.980 6.980
18 O -0.964 6.964
19 C -1.103 5.103
20 H 0.134 0.866
21 C -0.063 4.063
22 N -0.460 5.460
23 Si 0.620 3.380
24 H -0.172 1.172
25 H -0.183 1.183
26 H -0.146 1.146
27 H 0.076 0.924
28 H 0.121 0.879
29 H 0.077 0.923
30 H 0.130 0.870
31 H 0.155 0.845
32 H 0.115 0.885
33 H 0.085 0.915
34 H 0.084 0.916
35 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -3.014 11.794 0.338 12.178
hybrid contribution 0.585 -1.687 0.918 2.008
sum -2.429 10.107 1.256 10.470
Atomic orbital electron populations
1.23306 0.77449 1.03833 1.01594 1.87116 1.21986 1.29144 1.81622
1.23484 0.91290 0.82944 0.73603 1.90662 1.66187 1.36438 1.44554
1.23082 0.90198 0.97937 0.90807 0.84108 1.88125 1.40421 1.11805
1.55230 1.24875 0.99603 1.02546 0.95624 1.20911 0.92572 0.88587
0.92604 0.86145 1.23378 0.82851 0.87131 0.80770 1.91211 1.63902
1.13563 1.60324 1.86334 1.46657 1.41551 1.53204 1.23258 0.89576
0.98260 0.94457 1.58878 1.69213 1.28533 1.25400 1.02045 0.76070
0.70623 0.73841 1.93483 1.88713 1.84370 1.31482 1.93525 1.52797
1.74291 1.75738 1.30070 1.26903 1.05712 1.47608 0.86577 1.24300
0.94412 0.95815 0.91765 1.69985 1.26553 1.09702 1.39789 0.87928
0.83216 0.84021 0.82881 1.17173 1.18268 1.14584 0.92364 0.87879
0.92332 0.87033 0.84471 0.88450 0.91494 0.91642 0.91256
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 27.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.48 10.56 101.05 1.07 1.55 16
2 O -0.29 -5.54 6.89 -47.47 -0.33 -5.87 16
3 C 0.45 8.38 7.37 36.00 0.27 8.65 16
4 O -0.49 -9.26 15.73 -18.75 -0.29 -9.55 16
5 C 0.20 3.48 3.88 -4.89 -0.02 3.47 16
6 H 0.14 2.28 8.14 -51.93 -0.42 1.86 16
7 S -0.18 -2.63 21.97 -107.50 -2.36 -4.99 16
8 C -0.08 -0.93 6.99 38.43 0.27 -0.66 16
9 C 0.16 2.66 3.30 -68.01 -0.22 2.44 16
10 H 0.12 1.75 8.14 -51.92 -0.42 1.32 16
11 C 0.42 7.80 6.58 36.00 0.24 8.04 16
12 O -0.41 -9.54 9.47 -27.07 -0.26 -9.79 16
13 O -0.36 -5.40 10.50 -39.27 -0.41 -5.82 16
14 C 0.04 0.50 10.56 101.05 1.07 1.56 16
15 N -0.98 -19.39 3.19 -104.03 -0.33 -19.72 16
16 S 2.67 66.62 3.49 -107.50 -0.38 66.24 16
17 O -0.99 -26.44 12.52 -67.41 -0.84 -27.28 16
18 O -0.97 -24.78 12.45 -67.27 -0.84 -25.62 16
19 C -0.97 -26.82 7.79 30.60 0.24 -26.58 16
20 H 0.12 3.29 8.04 -52.49 -0.42 2.86 16
21 C 0.15 4.46 5.47 -17.82 -0.10 4.36 16
22 N -0.83 -24.09 13.96 55.43 0.77 -23.31 16
23 Si 0.80 20.80 26.54 -169.99 -4.51 16.29 16
24 H -0.25 -6.23 7.11 56.52 0.40 -5.83 16
25 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16
26 H -0.22 -5.95 5.61 56.52 0.32 -5.63 16
27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16
28 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16
29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16
30 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16
31 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16
32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16
33 H 0.07 0.95 8.13 -51.92 -0.42 0.53 16
34 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16
35 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16
LS Contribution 316.73 15.07 4.77 4.77
Total: -1.00 -35.36 316.73 -6.07 -41.43
By element:
Atomic # 1 Polarization: 4.27 SS G_CDS: -3.87 Total: 0.41 kcal
Atomic # 6 Polarization: 0.02 SS G_CDS: 2.80 Total: 2.82 kcal
Atomic # 7 Polarization: -43.48 SS G_CDS: 0.44 Total: -43.03 kcal
Atomic # 8 Polarization: -80.96 SS G_CDS: -2.97 Total: -83.93 kcal
Atomic # 14 Polarization: 20.80 SS G_CDS: -4.51 Total: 16.29 kcal
Atomic # 16 Polarization: 63.99 SS G_CDS: -2.74 Total: 61.25 kcal
Total LS contribution 4.77 Total: 4.77 kcal
Total: -35.36 -6.07 -41.43 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192961699.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -144.019 kcal
(2) G-P(sol) polarization free energy of solvation -35.359 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal
(6) G-S(sol) free energy of system = (1) + (5) -185.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds