Wall clock time and date at job start Tue Mar 31 2020 22:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42102 * 110.54535 * 2 1 4 4 O 1.42099 * 110.54467 * 223.25314 * 2 1 3 5 5 C 1.76194 * 104.45285 * 111.62855 * 2 1 3 6 6 C 1.38288 * 119.93503 * 115.02257 * 5 2 1 7 7 C 1.38087 * 120.09272 * 180.02562 * 6 5 2 8 8 C 1.38953 * 119.94662 * 0.02562 * 7 6 5 9 9 N 1.39669 * 120.06413 * 180.02562 * 8 7 6 10 10 S 1.65598 * 120.00125 * 133.81289 * 9 8 7 11 11 O 1.42093 * 106.40123 * 52.05960 * 10 9 8 12 12 O 1.42107 * 106.40056 * 184.97884 * 10 9 8 13 13 C 1.76203 * 107.21703 * 298.51996 * 10 9 8 14 14 H 1.07997 * 119.99962 * 5.20774 * 13 10 9 15 15 C 1.37882 * 119.99738 * 185.21316 * 13 10 9 16 16 N 1.31510 * 119.99707 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 119.99903 * 359.97438 * 15 13 10 18 18 H 1.48495 * 109.47320 * 90.00552 * 17 15 13 19 19 H 1.48506 * 109.46448 * 210.00160 * 17 15 13 20 20 H 1.48490 * 109.47144 * 329.99816 * 17 15 13 21 21 C 1.38866 * 119.86444 * 359.70250 * 8 7 6 22 22 C 1.38245 * 119.91168 * 0.57169 * 21 8 7 23 23 Cl 1.73593 * 119.97555 * 179.72970 * 22 21 8 24 24 H 1.09005 * 109.46913 * 308.36741 * 1 2 3 25 25 H 1.08996 * 109.47191 * 68.37210 * 1 2 3 26 26 H 1.08999 * 109.46665 * 188.37779 * 1 2 3 27 27 H 1.08001 * 119.95629 * 0.02562 * 6 5 2 28 28 H 1.07999 * 120.02884 * 180.02562 * 7 6 5 29 29 H 0.96998 * 119.99978 * 313.80446 * 9 8 7 30 30 H 0.96997 * 119.99934 * 179.97438 * 16 15 13 31 31 H 1.07997 * 120.04180 * 180.30290 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9691 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.9168 -1.8380 1.6894 7 6 3.2625 -2.3342 2.9308 8 6 2.9432 -1.6176 4.0777 9 7 3.2922 -2.1169 5.3345 10 16 3.9995 -1.1220 6.4535 11 8 3.1647 0.0232 6.5567 12 8 4.3346 -1.9421 7.5646 13 6 5.5243 -0.5662 5.7674 14 1 5.7851 -0.8239 4.7516 15 6 6.3845 0.1976 6.5275 16 7 7.5227 0.6121 6.0155 17 14 5.9330 0.6438 8.2843 18 1 6.4429 -0.4018 9.2072 19 1 6.5413 1.9525 8.6344 20 1 4.4561 0.7356 8.4077 21 6 2.2823 -0.4010 3.9713 22 6 1.9339 0.0877 2.7259 23 17 1.1015 1.6051 2.5914 24 1 -0.3633 0.6379 0.8058 25 1 -0.3633 0.3788 -0.9553 26 1 -0.3632 -1.0167 0.1497 27 1 3.1646 -2.3951 0.7979 28 1 3.7807 -3.2784 3.0103 29 1 3.1201 -3.0464 5.5520 30 1 8.1277 1.1497 6.5500 31 1 2.0371 0.1607 4.8606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972065.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:37 Heat of formation + Delta-G solvation = -116.679864 kcal Electronic energy + Delta-G solvation = -23042.170978 eV Core-core repulsion = 19183.482432 eV Total energy + Delta-G solvation = -3858.688546 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.988 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.61283 -37.24256 -36.73240 -36.02336 -35.95605 -34.86963 -34.75677 -33.18742 -30.91034 -29.88830 -29.21519 -26.60102 -23.16078 -22.93366 -19.53273 -19.19428 -18.31404 -17.78529 -17.38295 -17.03708 -16.32396 -16.08589 -15.41213 -15.09254 -14.88105 -14.31386 -14.09737 -13.94474 -13.65992 -13.54243 -13.32734 -13.17799 -13.00188 -12.17111 -12.11189 -12.04327 -11.93279 -11.59197 -11.47244 -11.42932 -11.13269 -11.02995 -10.91961 -10.79004 -10.63051 -10.47242 -10.04068 -9.37196 -9.30878 -8.91025 -8.56268 -6.93777 -5.52720 -0.04803 0.64532 1.15497 1.60769 1.84984 2.75520 2.97805 3.05801 3.12746 3.29241 3.74625 3.80005 3.83339 4.08678 4.44348 4.57839 4.59352 4.82729 4.93178 5.05468 5.15541 5.34873 5.43756 5.47575 5.79637 5.80176 5.92938 6.09139 6.44659 6.63393 7.21491 7.33769 8.04689 8.53488 10.18140 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.004084 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.394528 B = 6854.771806 C = 6979.382574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.499 3.501 3 O -0.921 6.921 4 O -0.940 6.940 5 C -0.680 4.680 6 C 0.007 3.993 7 C -0.156 4.156 8 C 0.245 3.755 9 N -1.062 6.062 10 S 2.659 3.341 11 O -0.993 6.993 12 O -0.995 6.995 13 C -1.011 5.011 14 H 0.125 0.875 15 C 0.154 3.846 16 N -0.812 5.812 17 Si 0.814 3.186 18 H -0.244 1.244 19 H -0.254 1.254 20 H -0.231 1.231 21 C -0.159 4.159 22 C 0.071 3.929 23 Cl -0.047 7.047 24 H 0.133 0.867 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.157 0.843 28 H 0.145 0.855 29 H 0.422 0.578 30 H 0.284 0.716 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 -4.205 -9.832 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.677 3.323 3 O -0.918 6.918 4 O -0.938 6.938 5 C -0.768 4.768 6 C -0.013 4.013 7 C -0.179 4.179 8 C 0.146 3.854 9 N -0.806 5.806 10 S 2.763 3.237 11 O -0.983 6.983 12 O -0.985 6.985 13 C -1.147 5.147 14 H 0.143 0.857 15 C -0.067 4.067 16 N -0.440 5.440 17 Si 0.634 3.366 18 H -0.168 1.168 19 H -0.178 1.178 20 H -0.153 1.153 21 C -0.181 4.181 22 C 0.042 3.958 23 Cl -0.017 7.017 24 H 0.151 0.849 25 H 0.151 0.849 26 H 0.152 0.848 27 H 0.174 0.826 28 H 0.162 0.838 29 H 0.258 0.742 30 H 0.095 0.905 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -13.735 -3.371 -9.563 17.072 hybrid contribution 0.021 -0.306 1.181 1.221 sum -13.714 -3.677 -8.381 16.487 Atomic orbital electron populations 1.30310 1.25800 1.12243 1.12051 1.05237 0.77995 0.75010 0.74030 1.93645 1.76817 1.35694 1.85613 1.93555 1.77591 1.61930 1.60690 1.30240 1.19092 1.07885 1.19553 1.20750 0.90577 0.91415 0.98579 1.21400 1.02624 1.02683 0.91147 1.17500 0.90058 0.92388 0.85488 1.53791 1.75383 1.26118 1.25317 1.02094 0.76573 0.72936 0.72077 1.93430 1.70251 1.49170 1.85453 1.93444 1.85234 1.69333 1.50519 1.30164 1.23726 1.47716 1.13053 0.85699 1.24404 0.93181 0.90959 0.98183 1.69966 1.07824 1.28591 1.37606 0.87677 0.83306 0.81147 0.84464 1.16786 1.17782 1.15345 1.21929 0.99652 0.97610 0.98894 1.20127 0.95104 0.86878 0.93654 1.98410 1.75773 1.29658 1.97889 0.84893 0.84905 0.84829 0.82585 0.83759 0.74213 0.90535 0.80412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.54 10.60 101.05 1.07 -3.47 16 2 S 2.50 29.24 5.23 -107.50 -0.56 28.68 16 3 O -0.92 -13.95 16.46 -57.54 -0.95 -14.90 16 4 O -0.94 -12.55 16.73 -57.54 -0.96 -13.51 16 5 C -0.68 -9.36 5.58 -39.51 -0.22 -9.58 16 6 C 0.01 0.09 9.49 -39.62 -0.38 -0.29 16 7 C -0.16 -2.16 9.97 -39.37 -0.39 -2.55 16 8 C 0.25 4.12 6.14 -83.79 -0.51 3.60 16 9 N -1.06 -18.46 5.77 32.41 0.19 -18.28 16 10 S 2.66 61.94 4.11 -107.50 -0.44 61.50 16 11 O -0.99 -24.35 13.71 -57.17 -0.78 -25.13 16 12 O -0.99 -24.66 16.37 -57.17 -0.94 -25.59 16 13 C -1.01 -27.15 10.15 30.60 0.31 -26.84 16 14 H 0.13 3.43 8.06 -52.49 -0.42 3.00 16 15 C 0.15 4.28 5.47 -17.82 -0.10 4.18 16 16 N -0.81 -22.88 13.96 55.43 0.77 -22.11 16 17 Si 0.81 20.10 26.32 -169.99 -4.47 15.62 16 18 H -0.24 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.25 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.23 -5.71 5.89 56.52 0.33 -5.38 16 21 C -0.16 -2.79 9.01 -39.35 -0.35 -3.14 16 22 C 0.07 1.11 6.28 -39.52 -0.25 0.86 16 23 Cl -0.05 -0.66 24.81 -51.86 -1.29 -1.95 16 24 H 0.13 0.92 6.29 -51.92 -0.33 0.60 16 25 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.16 1.63 7.20 -52.49 -0.38 1.25 16 28 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.42 5.67 8.96 -34.47 -0.31 5.36 16 30 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.18 3.37 5.69 -52.49 -0.30 3.07 16 LS Contribution 305.10 15.07 4.60 4.60 Total: -1.00 -34.92 305.10 -7.86 -42.78 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.21 Total: 5.51 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: -0.82 Total: -37.23 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.96 Total: -40.38 kcal Atomic # 8 Polarization: -75.50 SS G_CDS: -3.63 Total: -79.13 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.47 Total: 15.62 kcal Atomic # 16 Polarization: 91.18 SS G_CDS: -1.00 Total: 90.17 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.29 Total: -1.95 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.92 -7.86 -42.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972065.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.899 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds