Wall clock time and date at job start Tue Mar 31 2020 22:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42102 * 110.54535 * 2 1 4 4 O 1.42099 * 110.54467 * 223.25314 * 2 1 3 5 5 C 1.76194 * 104.45285 * 111.62855 * 2 1 3 6 6 C 1.38288 * 119.93503 * 115.02257 * 5 2 1 7 7 C 1.38087 * 120.09272 * 180.02562 * 6 5 2 8 8 C 1.38953 * 119.94662 * 0.02562 * 7 6 5 9 9 N 1.39669 * 120.06413 * 180.02562 * 8 7 6 10 10 S 1.65598 * 120.00125 * 133.81289 * 9 8 7 11 11 O 1.42093 * 106.40123 * 52.05960 * 10 9 8 12 12 O 1.42107 * 106.40056 * 184.97884 * 10 9 8 13 13 C 1.76203 * 107.21703 * 298.51996 * 10 9 8 14 14 H 1.07997 * 119.99962 * 5.20774 * 13 10 9 15 15 C 1.37882 * 119.99738 * 185.21316 * 13 10 9 16 16 N 1.31510 * 119.99707 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 119.99903 * 359.97438 * 15 13 10 18 18 H 1.48495 * 109.47320 * 90.00552 * 17 15 13 19 19 H 1.48506 * 109.46448 * 210.00160 * 17 15 13 20 20 H 1.48490 * 109.47144 * 329.99816 * 17 15 13 21 21 C 1.38866 * 119.86444 * 359.70250 * 8 7 6 22 22 C 1.38245 * 119.91168 * 0.57169 * 21 8 7 23 23 Cl 1.73593 * 119.97555 * 179.72970 * 22 21 8 24 24 H 1.09005 * 109.46913 * 308.36741 * 1 2 3 25 25 H 1.08996 * 109.47191 * 68.37210 * 1 2 3 26 26 H 1.08999 * 109.46665 * 188.37779 * 1 2 3 27 27 H 1.08001 * 119.95629 * 0.02562 * 6 5 2 28 28 H 1.07999 * 120.02884 * 180.02562 * 7 6 5 29 29 H 0.96998 * 119.99978 * 313.80446 * 9 8 7 30 30 H 0.96997 * 119.99934 * 179.97438 * 16 15 13 31 31 H 1.07997 * 120.04180 * 180.30290 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9691 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.9168 -1.8380 1.6894 7 6 3.2625 -2.3342 2.9308 8 6 2.9432 -1.6176 4.0777 9 7 3.2922 -2.1169 5.3345 10 16 3.9995 -1.1220 6.4535 11 8 3.1647 0.0232 6.5567 12 8 4.3346 -1.9421 7.5646 13 6 5.5243 -0.5662 5.7674 14 1 5.7851 -0.8239 4.7516 15 6 6.3845 0.1976 6.5275 16 7 7.5227 0.6121 6.0155 17 14 5.9330 0.6438 8.2843 18 1 6.4429 -0.4018 9.2072 19 1 6.5413 1.9525 8.6344 20 1 4.4561 0.7356 8.4077 21 6 2.2823 -0.4010 3.9713 22 6 1.9339 0.0877 2.7259 23 17 1.1015 1.6051 2.5914 24 1 -0.3633 0.6379 0.8058 25 1 -0.3633 0.3788 -0.9553 26 1 -0.3632 -1.0167 0.1497 27 1 3.1646 -2.3951 0.7979 28 1 3.7807 -3.2784 3.0103 29 1 3.1201 -3.0464 5.5520 30 1 8.1277 1.1497 6.5500 31 1 2.0371 0.1607 4.8606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972065.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:36 Heat of formation + Delta-G solvation = -146.246238 kcal Electronic energy + Delta-G solvation = -23043.453072 eV Core-core repulsion = 19183.482432 eV Total energy + Delta-G solvation = -3859.970641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.988 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.80816 -38.29123 -37.96081 -37.79175 -36.98627 -36.72950 -36.13343 -35.26231 -32.06793 -30.82291 -30.15013 -28.67036 -24.35682 -24.13188 -21.34529 -20.18957 -19.86678 -19.26515 -18.85252 -18.53862 -17.37360 -17.28947 -17.06595 -16.39103 -16.12772 -15.90183 -15.55097 -15.31430 -15.00898 -14.97180 -14.61757 -14.11872 -13.91549 -13.75229 -13.53311 -13.26348 -13.17224 -13.12969 -13.02207 -12.81402 -12.73945 -12.52120 -12.49716 -12.09905 -11.88439 -11.83559 -11.62571 -11.40966 -11.25772 -10.10524 -9.85221 -9.02588 -7.62818 -0.92523 -0.57963 -0.12984 0.00941 0.67715 1.02360 1.10518 1.15423 1.80753 1.82877 2.13782 2.19737 2.36485 2.86334 3.02595 3.19924 3.60582 3.72917 3.91193 3.99975 4.09782 4.21228 4.28774 4.39657 4.61951 4.70815 4.90756 4.93975 5.17009 5.29351 5.48205 5.91735 5.99083 6.44994 8.15060 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.004084 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.394528 B = 6854.771806 C = 6979.382574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.627 4.627 2 S 2.497 3.503 3 O -0.963 6.963 4 O -0.959 6.959 5 C -0.678 4.678 6 C 0.007 3.993 7 C -0.147 4.147 8 C 0.216 3.784 9 N -1.047 6.047 10 S 2.689 3.311 11 O -1.009 7.009 12 O -1.010 7.010 13 C -1.036 5.036 14 H 0.106 0.894 15 C 0.110 3.890 16 N -0.847 5.847 17 Si 0.835 3.165 18 H -0.235 1.235 19 H -0.222 1.222 20 H -0.235 1.235 21 C -0.184 4.184 22 C 0.060 3.940 23 Cl -0.040 7.040 24 H 0.136 0.864 25 H 0.166 0.834 26 H 0.165 0.835 27 H 0.186 0.814 28 H 0.175 0.825 29 H 0.440 0.560 30 H 0.293 0.707 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.822 -5.160 -10.893 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.677 3.323 3 O -0.960 6.960 4 O -0.956 6.956 5 C -0.763 4.763 6 C -0.012 4.012 7 C -0.169 4.169 8 C 0.117 3.883 9 N -0.797 5.797 10 S 2.791 3.209 11 O -0.999 6.999 12 O -1.001 7.001 13 C -1.169 5.169 14 H 0.124 0.876 15 C -0.108 4.108 16 N -0.477 5.477 17 Si 0.652 3.348 18 H -0.158 1.158 19 H -0.145 1.145 20 H -0.157 1.157 21 C -0.207 4.207 22 C 0.031 3.969 23 Cl -0.011 7.011 24 H 0.155 0.845 25 H 0.184 0.816 26 H 0.183 0.817 27 H 0.203 0.797 28 H 0.193 0.807 29 H 0.280 0.720 30 H 0.104 0.896 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.420 -4.328 -10.602 19.207 hybrid contribution 0.427 -0.047 1.301 1.370 sum -14.993 -4.375 -9.301 18.178 Atomic orbital electron populations 1.30114 1.18991 1.14801 1.14166 1.05325 0.80558 0.73652 0.72742 1.93599 1.79492 1.37259 1.85649 1.93528 1.79709 1.61952 1.60426 1.30709 1.17919 1.07606 1.20079 1.21194 0.89467 0.91271 0.99264 1.21759 1.01476 1.03362 0.90309 1.17705 0.91771 0.93092 0.85703 1.53073 1.74957 1.26543 1.25177 1.01028 0.75172 0.72761 0.71980 1.93416 1.69766 1.50717 1.85971 1.93413 1.85554 1.69583 1.51516 1.30736 1.25719 1.47808 1.12648 0.87579 1.25159 0.93374 0.91101 1.01194 1.70001 1.08809 1.29733 1.39148 0.87337 0.83199 0.82903 0.81347 1.15818 1.14480 1.15746 1.21896 1.01276 0.98344 0.99147 1.20197 0.95654 0.87434 0.93573 1.98403 1.75564 1.29290 1.97853 0.84521 0.81622 0.81664 0.79699 0.80725 0.71990 0.89590 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -6.12 10.60 113.37 1.20 -4.92 16 2 S 2.50 53.42 5.23 -56.49 -0.30 53.13 16 3 O -0.96 -28.51 16.46 -127.65 -2.10 -30.61 16 4 O -0.96 -23.45 16.73 -127.65 -2.14 -25.58 16 5 C -0.68 -17.65 5.58 22.32 0.12 -17.52 16 6 C 0.01 0.17 9.49 22.25 0.21 0.39 16 7 C -0.15 -3.79 9.97 22.41 0.22 -3.57 16 8 C 0.22 7.12 6.14 38.21 0.23 7.35 16 9 N -1.05 -35.88 5.77 -51.37 -0.30 -36.17 16 10 S 2.69 125.61 4.11 -56.49 -0.23 125.37 16 11 O -1.01 -50.01 13.71 -128.00 -1.76 -51.76 16 12 O -1.01 -49.65 16.37 -128.00 -2.10 -51.74 16 13 C -1.04 -56.76 10.15 67.74 0.69 -56.07 16 14 H 0.11 6.02 8.06 -2.91 -0.02 6.00 16 15 C 0.11 6.17 5.47 84.66 0.46 6.63 16 16 N -0.85 -48.56 13.96 21.45 0.30 -48.26 16 17 Si 0.83 40.37 26.32 68.60 1.81 42.18 16 18 H -0.24 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.22 -9.56 7.11 99.48 0.71 -8.85 16 20 H -0.23 -11.44 5.89 99.48 0.59 -10.86 16 21 C -0.18 -6.53 9.01 22.42 0.20 -6.32 16 22 C 0.06 1.84 6.28 22.31 0.14 1.98 16 23 Cl -0.04 -1.13 24.81 -2.72 -0.07 -1.20 16 24 H 0.14 1.42 6.29 -2.39 -0.02 1.40 16 25 H 0.17 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.17 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.19 3.29 7.20 -2.91 -0.02 3.27 16 28 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 29 H 0.44 11.30 8.96 -96.75 -0.87 10.43 16 30 H 0.29 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.16 6.17 5.69 -2.91 -0.02 6.15 16 Total: -1.00 -77.25 305.10 -3.16 -80.41 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.22 Total: 16.30 kcal Atomic # 6 Polarization: -75.54 SS G_CDS: 3.49 Total: -72.06 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: 0.00 Total: -84.44 kcal Atomic # 8 Polarization: -151.61 SS G_CDS: -8.09 Total: -159.70 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.81 Total: 42.18 kcal Atomic # 16 Polarization: 179.03 SS G_CDS: -0.53 Total: 178.50 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -77.25 -3.16 -80.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972065.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.837 kcal (2) G-P(sol) polarization free energy of solvation -77.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds