Wall clock time and date at job start Tue Mar 31 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48494 * 109.47199 * 239.99443 * 3 2 1 5 5 H 1.48498 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.46864 * 119.99650 * 3 2 1 7 7 C 1.37879 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00076 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42094 * 106.40477 * 66.45703 * 9 7 2 11 11 O 1.42100 * 106.39831 * 293.53264 * 9 7 2 12 12 N 1.65598 * 107.21628 * 179.97438 * 9 7 2 13 13 C 1.39969 * 120.00461 * 67.67648 * 12 9 7 14 14 C 1.38782 * 120.07006 * 327.00076 * 13 12 9 15 15 C 1.38271 * 120.00959 * 180.25092 * 14 13 12 16 16 Br 1.89101 * 119.92556 * 179.76494 * 15 14 13 17 17 C 1.38347 * 120.15504 * 359.74334 * 15 14 13 18 18 C 1.38453 * 120.14305 * 359.97438 * 17 15 14 19 19 F 1.35096 * 120.00927 * 180.02562 * 18 17 15 20 20 C 1.38697 * 119.98801 * 0.02562 * 18 17 15 21 21 O 1.36076 * 120.07979 * 179.97438 * 20 18 17 22 22 H 0.96993 * 120.00068 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99852 * 247.68079 * 12 9 7 24 24 H 1.08003 * 119.99412 * 359.97438 * 14 13 12 25 25 H 1.07997 * 119.93191 * 180.02562 * 17 15 14 26 26 H 0.96696 * 114.00720 * 89.99323 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2493 11 8 0.4511 -2.7950 1.2501 12 7 2.2483 -3.9354 0.0005 13 6 3.0616 -4.1364 1.1218 14 6 3.4577 -3.0551 1.8964 15 6 4.2655 -3.2545 3.0008 16 35 4.8092 -1.7787 4.0506 17 6 4.6764 -4.5313 3.3398 18 6 4.2803 -5.6152 2.5749 19 9 4.6827 -6.8609 2.9087 20 6 3.4701 -5.4220 1.4659 21 8 3.0800 -6.4860 0.7125 22 1 -0.4850 0.8400 -0.0004 23 1 2.3436 -4.5080 -0.7766 24 1 3.1387 -2.0572 1.6339 25 1 5.3069 -4.6829 4.2034 26 1 2.2504 -6.8898 1.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982077.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:40 Heat of formation + Delta-G solvation = -148.823258 kcal Electronic energy + Delta-G solvation = -19516.839723 eV Core-core repulsion = 15876.116473 eV Total energy + Delta-G solvation = -3640.723251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 338.941 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.92411 -39.80960 -36.84061 -35.55004 -34.67667 -34.27785 -33.29983 -31.46265 -29.29252 -28.22277 -26.42098 -22.87361 -22.41276 -19.31083 -18.74312 -17.89423 -17.69374 -16.94744 -16.29768 -15.75460 -15.65219 -15.24138 -14.99871 -14.23951 -14.21144 -13.79942 -13.56634 -12.87532 -12.65391 -12.20685 -11.94886 -11.50568 -11.30596 -11.27810 -11.10177 -10.71907 -10.59604 -10.50322 -10.46107 -10.23740 -10.05739 -9.38208 -9.06263 -8.53433 -8.11110 -6.88962 -5.55578 0.86674 1.13067 1.57840 1.88774 3.01404 3.06150 3.11185 3.30863 3.87580 3.95654 4.19524 4.32012 4.46279 4.94591 5.12594 5.19162 5.39159 5.53934 5.72185 5.95212 6.10027 6.23687 6.48405 6.61676 7.12458 7.39058 7.57671 7.71395 8.68054 10.05429 Molecular weight = 338.94amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.007084 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.703002 B = 3951.789501 C = 6013.490103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.138 3.862 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.258 1.258 7 C -1.024 5.024 8 H 0.111 0.889 9 S 2.694 3.306 10 O -0.990 6.990 11 O -0.985 6.985 12 N -1.060 6.060 13 C 0.211 3.789 14 C -0.140 4.140 15 C -0.037 4.037 16 Br -0.032 7.032 17 C -0.148 4.148 18 C 0.104 3.896 19 F -0.129 7.129 20 C 0.044 3.956 21 O -0.481 6.481 22 H 0.295 0.705 23 H 0.421 0.579 24 H 0.183 0.817 25 H 0.147 0.853 26 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.785 -5.656 7.086 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.082 4.082 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.182 1.182 7 C -1.157 5.157 8 H 0.129 0.871 9 S 2.795 3.205 10 O -0.980 6.980 11 O -0.975 6.975 12 N -0.800 5.800 13 C 0.109 3.891 14 C -0.163 4.163 15 C -0.118 4.118 16 Br 0.053 6.947 17 C -0.170 4.170 18 C 0.083 3.917 19 F -0.107 7.107 20 C -0.007 4.007 21 O -0.290 6.290 22 H 0.106 0.894 23 H 0.255 0.745 24 H 0.199 0.801 25 H 0.165 0.835 26 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.280 -4.988 7.232 12.779 hybrid contribution 0.447 0.162 -0.358 0.595 sum 9.728 -4.826 6.875 12.852 Atomic orbital electron populations 1.69861 1.06857 1.31349 1.38566 1.24724 0.94495 1.00852 0.88169 0.86190 0.80016 0.79281 0.80292 1.18615 1.19949 1.18179 1.30451 1.06132 1.11049 1.68114 0.87106 1.01360 0.72217 0.73561 0.73367 1.93413 1.72185 1.87122 1.45276 1.93426 1.71840 1.86995 1.45262 1.54416 1.52571 1.52183 1.20879 1.17358 0.91442 0.91534 0.88743 1.21967 0.97719 1.01659 0.94973 1.21153 1.01404 0.92271 0.96928 1.96726 1.89644 1.40169 1.68133 1.20812 1.04298 0.89828 1.02061 1.17515 0.99610 0.79969 0.94647 1.91495 1.88807 1.38517 1.91894 1.18126 1.02561 0.86912 0.93052 1.84849 1.45198 1.44144 1.54849 0.89428 0.74458 0.80058 0.83482 0.75288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.05 13.19 55.43 0.73 -22.32 15 2 C 0.14 3.55 5.46 -17.82 -0.10 3.46 15 3 Si 0.92 19.21 29.54 -169.99 -5.02 14.19 15 4 H -0.26 -5.33 7.11 56.52 0.40 -4.92 15 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 7 C -1.02 -25.78 7.59 30.60 0.23 -25.54 15 8 H 0.11 2.51 6.88 -52.49 -0.36 2.14 15 9 S 2.69 66.76 4.63 -107.50 -0.50 66.26 15 10 O -0.99 -27.26 18.02 -57.17 -1.03 -28.29 15 11 O -0.99 -26.79 17.45 -57.17 -1.00 -27.79 15 12 N -1.06 -20.24 5.67 32.50 0.18 -20.06 15 13 C 0.21 3.80 6.21 -83.58 -0.52 3.28 15 14 C -0.14 -2.58 8.68 -39.37 -0.34 -2.92 15 15 C -0.04 -0.58 6.22 -39.53 -0.25 -0.82 15 16 Br -0.03 -0.46 33.69 -68.01 -2.29 -2.75 15 17 C -0.15 -2.03 9.76 -39.46 -0.39 -2.41 15 18 C 0.10 1.51 7.30 -39.33 -0.29 1.22 15 19 F -0.13 -1.79 17.11 2.25 0.04 -1.75 15 20 C 0.04 0.69 6.73 -39.05 -0.26 0.43 15 21 O -0.48 -6.60 12.90 -19.98 -0.26 -6.86 15 22 H 0.30 7.32 8.31 -40.82 -0.34 6.98 15 23 H 0.42 6.92 8.66 -34.47 -0.30 6.63 15 24 H 0.18 3.67 4.47 -52.48 -0.23 3.44 15 25 H 0.15 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.39 3.76 9.07 45.56 0.41 4.18 15 LS Contribution 276.90 15.07 4.17 4.17 Total: -1.00 -31.84 276.90 -6.91 -38.76 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -0.04 Total: 9.74 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.91 Total: -23.31 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.92 Total: -42.38 kcal Atomic # 8 Polarization: -60.65 SS G_CDS: -2.29 Total: -62.94 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 16 Polarization: 66.76 SS G_CDS: -0.50 Total: 66.26 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.75 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.84 -6.91 -38.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982077.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.066 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds