Wall clock time and date at job start Tue Mar 31 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48494 * 109.47199 * 239.99443 * 3 2 1 5 5 H 1.48498 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.46864 * 119.99650 * 3 2 1 7 7 C 1.37879 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00076 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42094 * 106.40477 * 66.45703 * 9 7 2 11 11 O 1.42100 * 106.39831 * 293.53264 * 9 7 2 12 12 N 1.65598 * 107.21628 * 179.97438 * 9 7 2 13 13 C 1.39969 * 120.00461 * 67.67648 * 12 9 7 14 14 C 1.38782 * 120.07006 * 327.00076 * 13 12 9 15 15 C 1.38271 * 120.00959 * 180.25092 * 14 13 12 16 16 Br 1.89101 * 119.92556 * 179.76494 * 15 14 13 17 17 C 1.38347 * 120.15504 * 359.74334 * 15 14 13 18 18 C 1.38453 * 120.14305 * 359.97438 * 17 15 14 19 19 F 1.35096 * 120.00927 * 180.02562 * 18 17 15 20 20 C 1.38697 * 119.98801 * 0.02562 * 18 17 15 21 21 O 1.36076 * 120.07979 * 179.97438 * 20 18 17 22 22 H 0.96993 * 120.00068 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99852 * 247.68079 * 12 9 7 24 24 H 1.08003 * 119.99412 * 359.97438 * 14 13 12 25 25 H 1.07997 * 119.93191 * 180.02562 * 17 15 14 26 26 H 0.96696 * 114.00720 * 89.99323 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2493 11 8 0.4511 -2.7950 1.2501 12 7 2.2483 -3.9354 0.0005 13 6 3.0616 -4.1364 1.1218 14 6 3.4577 -3.0551 1.8964 15 6 4.2655 -3.2545 3.0008 16 35 4.8092 -1.7787 4.0506 17 6 4.6764 -4.5313 3.3398 18 6 4.2803 -5.6152 2.5749 19 9 4.6827 -6.8609 2.9087 20 6 3.4701 -5.4220 1.4659 21 8 3.0800 -6.4860 0.7125 22 1 -0.4850 0.8400 -0.0004 23 1 2.3436 -4.5080 -0.7766 24 1 3.1387 -2.0572 1.6339 25 1 5.3069 -4.6829 4.2034 26 1 2.2504 -6.8898 1.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192982077.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:40 Heat of formation + Delta-G solvation = -174.900337 kcal Electronic energy + Delta-G solvation = -19517.970510 eV Core-core repulsion = 15876.116473 eV Total energy + Delta-G solvation = -3641.854037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 338.941 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.06123 -41.06908 -38.02784 -37.55585 -36.34699 -36.10747 -35.23484 -32.65075 -30.62730 -29.46131 -28.36300 -24.19259 -23.67438 -21.11202 -20.09107 -19.52939 -19.00250 -18.60788 -17.75349 -17.15297 -16.95337 -16.85555 -16.37181 -15.99191 -15.67601 -15.42832 -14.80193 -14.20114 -14.06367 -13.92039 -13.29974 -13.09056 -13.02293 -12.95466 -12.67393 -12.61800 -12.58584 -12.32040 -11.77933 -11.40455 -11.31491 -11.22814 -10.96316 -9.76757 -9.44949 -8.80185 -7.55100 -0.36057 -0.16421 0.05803 0.40254 1.37385 1.38752 1.51571 2.07047 2.18084 2.53474 2.57834 2.77916 3.13756 3.50035 3.74475 3.81855 3.96459 4.08397 4.30732 4.56881 4.70712 4.92531 4.98865 5.22895 5.39431 5.81428 5.99332 6.53518 6.72767 8.16411 Molecular weight = 338.94amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.007084 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.703002 B = 3951.789501 C = 6013.490103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.082 3.918 3 Si 0.980 3.020 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.242 1.242 7 C -1.034 5.034 8 H 0.130 0.870 9 S 2.705 3.295 10 O -1.028 7.028 11 O -1.019 7.019 12 N -1.048 6.048 13 C 0.182 3.818 14 C -0.161 4.161 15 C -0.044 4.044 16 Br -0.018 7.018 17 C -0.125 4.125 18 C 0.108 3.892 19 F -0.121 7.121 20 C 0.056 3.944 21 O -0.484 6.484 22 H 0.302 0.698 23 H 0.431 0.569 24 H 0.160 0.840 25 H 0.181 0.819 26 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.910 -5.883 8.123 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.133 4.133 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.166 1.166 7 C -1.168 5.168 8 H 0.148 0.852 9 S 2.807 3.193 10 O -1.018 7.018 11 O -1.009 7.009 12 N -0.794 5.794 13 C 0.081 3.919 14 C -0.184 4.184 15 C -0.125 4.125 16 Br 0.067 6.933 17 C -0.146 4.146 18 C 0.086 3.914 19 F -0.099 7.099 20 C 0.005 3.995 21 O -0.296 6.296 22 H 0.112 0.888 23 H 0.269 0.731 24 H 0.177 0.823 25 H 0.198 0.802 26 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 11.396 -5.256 8.275 15.032 hybrid contribution -0.143 0.085 -0.615 0.637 sum 11.253 -5.171 7.660 14.562 Atomic orbital electron populations 1.69952 1.08708 1.32710 1.40274 1.25873 0.95241 1.04897 0.87272 0.85288 0.79033 0.74688 0.81209 1.17486 1.18960 1.16558 1.30751 1.07205 1.11294 1.67551 0.85232 1.00669 0.72478 0.74111 0.72023 1.93354 1.73955 1.87932 1.46578 1.93369 1.73469 1.87701 1.46325 1.53619 1.52312 1.51358 1.22156 1.17497 0.92748 0.92705 0.88910 1.21859 0.99203 1.00828 0.96501 1.21245 1.01114 0.93622 0.96488 1.96733 1.89313 1.39857 1.67361 1.21127 1.02840 0.88549 1.02119 1.17478 0.99218 0.80476 0.94233 1.91525 1.88613 1.38042 1.91720 1.18091 1.01968 0.86422 0.92972 1.84799 1.46507 1.43415 1.54911 0.88811 0.73139 0.82280 0.80174 0.72998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.80 13.19 21.45 0.28 -49.51 15 2 C 0.08 4.25 5.46 84.66 0.46 4.72 15 3 Si 0.98 38.57 29.54 68.60 2.03 40.59 15 4 H -0.25 -9.38 7.11 99.48 0.71 -8.67 15 5 H -0.27 -9.93 7.11 99.48 0.71 -9.23 15 6 H -0.24 -8.86 7.11 99.48 0.71 -8.15 15 7 C -1.03 -52.54 7.59 67.73 0.51 -52.03 15 8 H 0.13 5.86 6.88 -2.91 -0.02 5.84 15 9 S 2.71 137.32 4.63 -56.49 -0.26 137.06 15 10 O -1.03 -58.42 18.02 -128.00 -2.31 -60.72 15 11 O -1.02 -57.07 17.45 -128.00 -2.23 -59.30 15 12 N -1.05 -40.27 5.67 -51.08 -0.29 -40.56 15 13 C 0.18 6.42 6.21 38.21 0.24 6.66 15 14 C -0.16 -5.80 8.68 22.41 0.19 -5.60 15 15 C -0.04 -1.30 6.22 22.30 0.14 -1.16 15 16 Br -0.02 -0.49 33.69 -20.37 -0.69 -1.17 15 17 C -0.12 -3.03 9.76 22.35 0.22 -2.81 15 18 C 0.11 2.81 7.30 22.43 0.16 2.97 15 19 F -0.12 -2.94 17.11 44.97 0.77 -2.17 15 20 C 0.06 1.66 6.73 22.61 0.15 1.81 15 21 O -0.48 -12.29 12.90 -94.41 -1.22 -13.51 15 22 H 0.30 15.28 8.31 -92.71 -0.77 14.51 15 23 H 0.43 14.23 8.66 -96.75 -0.84 13.39 15 24 H 0.16 6.47 4.47 -2.91 -0.01 6.46 15 25 H 0.18 3.16 8.06 -2.91 -0.02 3.14 15 26 H 0.41 7.05 9.07 -74.06 -0.67 6.38 15 Total: -1.00 -69.03 276.90 -2.05 -71.08 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.22 Total: 23.67 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 2.08 Total: -45.44 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -0.01 Total: -90.08 kcal Atomic # 8 Polarization: -127.78 SS G_CDS: -5.76 Total: -133.54 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.77 Total: -2.17 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: 137.32 SS G_CDS: -0.26 Total: 137.06 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -0.69 Total: -1.17 kcal Total: -69.03 -2.05 -71.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982077.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.821 kcal (2) G-P(sol) polarization free energy of solvation -69.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds