Wall clock time and date at job start Tue Mar 31 2020 22:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48499 * 109.47331 * 270.00128 * 3 2 1 5 5 H 1.48502 * 109.46710 * 29.99950 * 3 2 1 6 6 H 1.48499 * 109.46976 * 149.99473 * 3 2 1 7 7 C 1.37878 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00195 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99879 * 179.97438 * 7 2 1 10 10 O 1.42101 * 106.40142 * 66.46046 * 9 7 2 11 11 O 1.42100 * 106.40455 * 293.53924 * 9 7 2 12 12 N 1.65605 * 107.21435 * 179.97438 * 9 7 2 13 13 C 1.46499 * 119.99754 * 65.00457 * 12 9 7 14 14 H 1.09002 * 109.47391 * 24.99564 * 13 12 9 15 15 C 1.53002 * 109.46799 * 264.99661 * 13 12 9 16 16 O 1.42903 * 109.47251 * 295.00076 * 15 13 12 17 17 C 1.50701 * 109.46992 * 144.99574 * 13 12 9 18 18 C 1.38240 * 119.99137 * 24.72748 * 17 13 12 19 19 C 1.38202 * 120.02502 * 179.72600 * 18 17 13 20 20 C 1.38383 * 120.01236 * 0.54137 * 19 18 17 21 21 Cl 1.73597 * 120.00787 * 179.74932 * 20 19 18 22 22 C 1.38309 * 119.98568 * 359.73261 * 20 19 18 23 23 C 1.38336 * 119.99279 * 204.99859 * 17 13 12 24 24 Cl 1.73594 * 120.00758 * 359.97438 * 23 17 13 25 25 H 0.96996 * 120.00185 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99610 * 245.00069 * 12 9 7 27 27 H 1.08996 * 109.47073 * 55.00163 * 15 13 12 28 28 H 1.09002 * 109.46816 * 175.00414 * 15 13 12 29 29 H 0.96690 * 113.99994 * 180.02562 * 16 15 13 30 30 H 1.08005 * 119.98981 * 359.97438 * 18 17 13 31 31 H 1.08001 * 119.99906 * 180.24920 * 19 18 17 32 32 H 1.08002 * 120.01314 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 16 3.7667 -1.1939 -0.0012 10 8 4.1683 -0.6497 1.2485 11 8 4.1674 -0.6492 -1.2510 12 7 4.2569 -2.7758 -0.0011 13 6 3.9611 -3.6343 -1.1507 14 1 3.8368 -3.0187 -2.0415 15 6 2.6720 -4.4148 -0.8860 16 8 2.8726 -5.3080 0.2113 17 6 5.0986 -4.6000 -1.3622 18 6 5.9198 -4.9428 -0.3043 19 6 6.9597 -5.8327 -0.4962 20 6 7.1863 -6.3724 -1.7501 21 17 8.4965 -7.4851 -1.9925 22 6 6.3685 -6.0254 -2.8102 23 6 5.3242 -5.1388 -2.6162 24 17 4.2968 -4.7032 -3.9459 25 1 -0.4850 0.8400 0.0004 26 1 4.7398 -3.1337 0.7602 27 1 1.8687 -3.7185 -0.6455 28 1 2.4040 -4.9858 -1.7750 29 1 2.0947 -5.8368 0.4352 30 1 5.7463 -4.5182 0.6735 31 1 7.5985 -6.1033 0.3315 32 1 6.5447 -6.4467 -3.7889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995287.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:38 Heat of formation + Delta-G solvation = -137.927562 kcal Electronic energy + Delta-G solvation = -23076.370630 eV Core-core repulsion = 19214.717008 eV Total energy + Delta-G solvation = -3861.653622 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.993 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96044 -38.44687 -37.73384 -37.67334 -37.23101 -36.52206 -35.79570 -35.16971 -32.06918 -31.77117 -29.18520 -28.38620 -24.65572 -24.05320 -22.08517 -21.11665 -19.59645 -19.11419 -18.57282 -18.03165 -17.45749 -17.18673 -16.56161 -16.35365 -15.88414 -15.59533 -15.49806 -15.13850 -15.05267 -14.80160 -14.64502 -14.11297 -13.59184 -13.41476 -13.31390 -13.24304 -12.90671 -12.84489 -12.73705 -12.58001 -12.46663 -12.06355 -11.97359 -11.91977 -11.81808 -11.32799 -11.21547 -10.82609 -10.44304 -10.00056 -9.64758 -8.94628 -7.50541 -0.13969 0.05328 0.11386 0.78191 1.05952 1.14896 1.22246 1.23166 1.89943 2.33038 2.43360 2.50121 3.26831 3.27722 3.44700 3.63418 3.94136 4.02944 4.10150 4.18591 4.22794 4.39834 4.44283 4.65819 4.67528 4.84350 4.88812 5.05621 5.32211 5.41177 5.49127 6.07694 6.18852 6.56190 6.91680 8.21433 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.003820 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.452081 B = 7328.679392 C = 7623.794370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.115 3.885 3 Si 0.816 3.184 4 H -0.240 1.240 5 H -0.221 1.221 6 H -0.232 1.232 7 C -1.034 5.034 8 H 0.122 0.878 9 S 2.690 3.310 10 O -1.027 7.027 11 O -1.028 7.028 12 N -1.098 6.098 13 C 0.189 3.811 14 H 0.106 0.894 15 C 0.061 3.939 16 O -0.568 6.568 17 C -0.069 4.069 18 C -0.079 4.079 19 C -0.096 4.096 20 C -0.031 4.031 21 Cl -0.051 7.051 22 C -0.098 4.098 23 C -0.032 4.032 24 Cl -0.057 7.057 25 H 0.291 0.709 26 H 0.420 0.580 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.395 0.605 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.673 -15.632 -4.025 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.102 4.102 3 Si 0.633 3.367 4 H -0.163 1.163 5 H -0.143 1.143 6 H -0.154 1.154 7 C -1.167 5.167 8 H 0.140 0.860 9 S 2.791 3.209 10 O -1.017 7.017 11 O -1.017 7.017 12 N -0.859 5.859 13 C 0.081 3.919 14 H 0.123 0.877 15 C -0.018 4.018 16 O -0.376 6.376 17 C -0.072 4.072 18 C -0.098 4.098 19 C -0.115 4.115 20 C -0.058 4.058 21 Cl -0.022 7.022 22 C -0.117 4.117 23 C -0.059 4.059 24 Cl -0.028 7.028 25 H 0.101 0.899 26 H 0.257 0.743 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.244 0.756 30 H 0.166 0.834 31 H 0.183 0.817 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.590 -14.515 -4.328 19.072 hybrid contribution -1.223 0.152 0.135 1.240 sum 10.367 -14.363 -4.193 18.203 Atomic orbital electron populations 1.69986 1.07196 1.30377 1.40236 1.25029 0.95516 1.00980 0.88688 0.87623 0.82961 0.83533 0.82545 1.16302 1.14338 1.15445 1.30992 1.17226 1.02173 1.66302 0.86015 1.00736 0.76311 0.71421 0.72469 1.93445 1.85409 1.77149 1.45711 1.93392 1.84890 1.77213 1.46239 1.55121 1.73702 1.29479 1.27552 1.19843 0.92571 0.90432 0.89020 0.87667 1.22692 0.95708 0.92819 0.90604 1.86375 1.42476 1.56848 1.51862 1.19747 0.96950 0.97708 0.92750 1.20989 0.93408 0.96510 0.98903 1.21378 0.97798 0.95714 0.96568 1.20816 0.93038 0.96995 0.94915 1.98383 1.46315 1.60406 1.97098 1.20978 0.93112 0.97220 1.00415 1.20628 0.95859 1.00755 0.88688 1.98392 1.66685 1.91932 1.45750 0.89861 0.74271 0.92645 0.90945 0.75614 0.83386 0.81749 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.32 13.96 21.45 0.30 -47.02 16 2 C 0.12 6.41 5.47 84.65 0.46 6.88 16 3 Si 0.82 40.23 26.54 68.60 1.82 42.05 16 4 H -0.24 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.22 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.23 -11.84 5.61 99.48 0.56 -11.28 16 7 C -1.03 -55.52 10.09 67.73 0.68 -54.83 16 8 H 0.12 6.46 5.77 -2.91 -0.02 6.44 16 9 S 2.69 130.54 4.22 -56.49 -0.24 130.31 16 10 O -1.03 -53.86 16.02 -128.00 -2.05 -55.91 16 11 O -1.03 -53.47 16.17 -128.00 -2.07 -55.54 16 12 N -1.10 -40.54 5.28 -172.52 -0.91 -41.45 16 13 C 0.19 6.27 2.43 44.25 0.11 6.37 16 14 H 0.11 3.81 6.49 -2.39 -0.02 3.80 16 15 C 0.06 1.84 6.87 71.98 0.49 2.33 16 16 O -0.57 -14.66 12.88 -148.98 -1.92 -16.58 16 17 C -0.07 -1.90 4.65 -19.84 -0.09 -1.99 16 18 C -0.08 -1.87 9.04 22.26 0.20 -1.67 16 19 C -0.10 -1.84 9.83 22.30 0.22 -1.62 16 20 C -0.03 -0.59 6.32 22.32 0.14 -0.45 16 21 Cl -0.05 -0.85 28.96 -2.72 -0.08 -0.93 16 22 C -0.10 -2.01 9.62 22.31 0.21 -1.80 16 23 C -0.03 -0.79 6.31 22.32 0.14 -0.65 16 24 Cl -0.06 -1.43 27.15 -2.72 -0.07 -1.50 16 25 H 0.29 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.42 13.24 6.55 -96.74 -0.63 12.60 16 27 H 0.06 1.94 5.63 -2.39 -0.01 1.93 16 28 H 0.07 1.86 7.89 -2.39 -0.02 1.84 16 29 H 0.39 6.88 9.12 -74.06 -0.68 6.20 16 30 H 0.15 3.25 6.06 -2.91 -0.02 3.23 16 31 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -67.29 313.56 -2.89 -70.18 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.24 Total: 23.83 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 2.57 Total: -47.43 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -0.61 Total: -88.47 kcal Atomic # 8 Polarization: -121.99 SS G_CDS: -6.04 Total: -128.03 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.82 Total: 42.05 kcal Atomic # 16 Polarization: 130.54 SS G_CDS: -0.24 Total: 130.31 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -0.15 Total: -2.43 kcal Total: -67.29 -2.89 -70.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995287.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.750 kcal (2) G-P(sol) polarization free energy of solvation -67.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds