Wall clock time and date at job start Tue Mar 31 2020 22:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35849 * 116.99767 * 2 1 4 4 C 1.38961 * 120.38015 * 359.97438 * 3 2 1 5 5 N 1.31593 * 120.82304 * 180.02562 * 4 3 2 6 6 C 1.32660 * 121.69531 * 359.97438 * 5 4 3 7 7 C 1.48379 * 119.66172 * 180.02562 * 6 5 4 8 8 N 1.30786 * 126.41399 * 180.02562 * 7 6 5 9 9 O 1.21286 * 110.09278 * 180.02562 * 8 7 6 10 10 C 1.33675 * 110.03198 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.43557 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47064 * 270.02203 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 N 1.30966 * 107.12810 * 0.26233 * 10 9 8 21 21 C 1.39375 * 120.67267 * 0.27859 * 6 5 4 22 22 Br 1.89099 * 120.44109 * 179.70143 * 21 6 5 23 23 C 1.38465 * 119.11397 * 359.47852 * 21 6 5 24 24 H 1.09000 * 109.47104 * 59.99890 * 1 2 3 25 25 H 1.08998 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47399 * 300.00125 * 1 2 3 27 27 H 1.07995 * 119.58500 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.47152 * 150.02296 * 11 10 9 29 29 H 1.09001 * 109.46980 * 30.02396 * 11 10 9 30 30 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 31 31 H 1.08005 * 120.77823 * 180.22305 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2966 2.3808 -0.0005 5 7 1.8848 3.5580 -0.0010 6 6 3.2061 3.6768 -0.0006 7 6 3.8219 5.0268 -0.0006 8 7 5.1017 5.2963 -0.0006 9 8 5.2747 6.4968 -0.0001 10 6 4.0970 7.1291 -0.0003 11 6 3.8819 8.6207 -0.0004 12 6 3.8106 9.1180 1.4204 13 1 3.9114 8.4235 2.2413 14 6 3.6178 10.4598 1.6723 15 7 3.4956 11.3056 0.6726 16 14 3.5301 11.0763 3.4334 17 1 3.6957 9.9333 4.3669 18 1 4.6130 12.0656 3.6660 19 1 2.2126 11.7203 3.6674 20 7 3.1651 6.2089 0.0048 21 6 4.0217 2.5466 -0.0053 22 35 5.9043 2.7237 -0.0131 23 6 3.4349 1.2924 0.0004 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2181 2.3236 -0.0014 28 1 2.9490 8.8533 -0.5140 29 1 4.7108 9.1073 -0.5145 30 1 3.3596 12.2495 0.8499 31 1 4.0412 0.3986 0.0006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247444456.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:13 Heat of formation + Delta-G solvation = 77.737949 kcal Electronic energy + Delta-G solvation = -20111.818352 eV Core-core repulsion = 16637.061732 eV Total energy + Delta-G solvation = -3474.756620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.73930 -41.01052 -38.62123 -35.13858 -33.94014 -33.49961 -32.24562 -31.05225 -29.64497 -28.40726 -27.91305 -24.99549 -24.06071 -23.12781 -22.46866 -20.79881 -18.51517 -17.66033 -17.50857 -17.20717 -16.35282 -16.25152 -15.90453 -14.82219 -14.64415 -14.53170 -14.29334 -13.73009 -13.21234 -13.12857 -12.48225 -12.38102 -12.21199 -12.11973 -11.52064 -11.45272 -11.14828 -10.92491 -10.80835 -10.47672 -10.22403 -9.97641 -9.90154 -9.57752 -9.57560 -9.12165 -8.59205 -8.48181 -6.22440 -4.27550 0.34994 0.72162 1.28605 1.99900 2.72802 2.83967 3.25418 3.33065 3.38627 3.45626 3.58750 3.80186 4.06815 4.16383 4.35044 4.46972 4.63666 4.72450 4.85938 4.97644 5.06933 5.16441 5.17727 5.50266 5.70307 5.86223 6.54391 6.64426 6.69286 7.14715 7.21611 7.53795 7.71768 7.94785 8.73013 8.87454 9.37179 10.88064 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.003529 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.936782 B = 7932.067266 C = 9174.275679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.306 6.306 3 C 0.087 3.913 4 C 0.040 3.960 5 N -0.399 5.399 6 C 0.209 3.791 7 C 0.185 3.815 8 N -0.363 5.363 9 O 0.072 5.928 10 C 0.236 3.764 11 C 0.101 3.899 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.281 1.281 20 N -0.473 5.473 21 C -0.086 4.086 22 Br 0.013 6.987 23 C -0.084 4.084 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.172 0.828 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.267 0.733 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -22.777 -2.910 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.217 6.217 3 C 0.038 3.962 4 C -0.121 4.121 5 N -0.109 5.109 6 C 0.069 3.931 7 C -0.085 4.085 8 N -0.074 5.074 9 O 0.012 5.988 10 C 0.017 3.983 11 C 0.062 3.938 12 C -0.561 4.561 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.207 1.207 20 N -0.206 5.206 21 C -0.170 4.170 22 Br 0.099 6.901 23 C -0.112 4.112 24 H 0.080 0.920 25 H 0.124 0.876 26 H 0.081 0.919 27 H 0.189 0.811 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.001 -22.724 -2.961 22.938 hybrid contribution -0.359 -0.170 0.946 1.027 sum -1.361 -22.893 -2.014 23.022 Atomic orbital electron populations 1.23223 0.77370 1.04747 1.02094 1.86072 1.22117 1.25384 1.88171 1.20089 0.92542 0.86130 0.97475 1.23156 1.01111 0.86265 1.01608 1.67562 1.09440 1.26070 1.07833 1.17745 0.88271 0.87352 0.99752 1.23095 0.86895 0.93251 1.05245 1.75471 1.17222 0.94308 1.20431 1.85316 1.35488 1.12696 1.65346 1.30208 0.77720 1.00807 0.89520 1.18240 1.00678 0.74688 1.00199 1.20844 1.51925 0.93196 0.90132 0.91960 1.24918 0.94429 0.96340 0.98023 1.69932 1.48189 1.03520 1.30908 0.86307 0.77834 0.78860 0.83739 1.19579 1.20644 1.20660 1.72167 1.30241 0.96484 1.21663 1.22681 0.93948 0.94674 1.05741 1.96840 0.98667 1.97753 1.96864 1.20712 0.92064 0.96996 1.01394 0.91952 0.87552 0.91940 0.81111 0.91220 0.92227 0.92350 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.73 10.50 -19.27 -0.20 -2.93 16 3 C 0.09 0.96 6.71 -38.97 -0.26 0.70 16 4 C 0.04 0.49 10.21 -17.39 -0.18 0.31 16 5 N -0.40 -6.70 10.28 -9.62 -0.10 -6.80 16 6 C 0.21 3.71 6.76 -82.91 -0.56 3.15 16 7 C 0.19 3.86 7.83 -156.10 -1.22 2.64 16 8 N -0.36 -7.42 9.01 30.97 0.28 -7.14 16 9 O 0.07 1.55 11.29 18.02 0.20 1.75 16 10 C 0.24 5.41 7.69 -12.99 -0.10 5.31 16 11 C 0.10 2.48 5.60 -29.03 -0.16 2.31 16 12 C -0.52 -14.11 9.09 -34.44 -0.31 -14.42 16 13 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 16 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 N -0.47 -10.94 11.56 -9.88 -0.11 -11.06 16 21 C -0.09 -1.27 6.27 -39.07 -0.24 -1.51 16 22 Br 0.01 0.18 30.54 -68.01 -2.08 -1.89 16 23 C -0.08 -0.98 9.88 -39.15 -0.39 -1.37 16 24 H 0.06 0.26 7.67 -51.93 -0.40 -0.14 16 25 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 27 H 0.17 1.47 6.31 -52.49 -0.33 1.14 16 28 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 29 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -30.79 302.82 -6.62 -37.42 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -2.36 Total: -5.72 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.53 Total: -0.10 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.80 Total: -48.98 kcal Atomic # 8 Polarization: -1.18 SS G_CDS: 0.00 Total: -1.18 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -2.08 Total: -1.89 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.79 -6.62 -37.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444456.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.155 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds