Wall clock time and date at job start Tue Mar 31 2020 22:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.43205 * 120.00109 * 233.10455 * 3 2 1 5 5 N 3.51041 * 140.68838 * 233.10401 * 2 1 3 6 6 C 1.41153 * 120.00212 * 53.10118 * 3 2 1 7 7 C 1.38986 * 119.99624 * 354.70514 * 6 3 2 8 8 H 1.08000 * 119.99841 * 68.74487 * 7 6 3 9 9 C 1.40819 * 120.00164 * 248.74115 * 7 6 3 10 10 N 1.30336 * 120.00272 * 185.57121 * 9 7 6 11 11 Si 1.86798 * 119.99687 * 5.56900 * 9 7 6 12 12 H 1.48505 * 109.47001 * 94.88414 * 11 9 7 13 13 H 1.48493 * 109.47222 * 214.88154 * 11 9 7 14 14 H 1.48510 * 109.47415 * 334.88385 * 11 9 7 15 15 N 1.38228 * 120.00156 * 174.70068 * 6 3 2 16 16 S 1.65594 * 120.00131 * 188.60848 * 15 6 3 17 17 O 1.42097 * 106.40289 * 334.24954 * 16 15 6 18 18 O 1.42095 * 106.40618 * 201.32932 * 16 15 6 19 19 C 1.76200 * 107.22013 * 87.78844 * 16 15 6 20 20 C 1.38229 * 119.99187 * 111.41565 * 19 16 15 21 21 C 1.38180 * 120.05473 * 180.23350 * 20 19 16 22 22 C 1.38500 * 120.02315 * 359.79050 * 21 20 19 23 23 F 1.35101 * 120.01121 * 179.97438 * 22 21 20 24 24 C 1.38392 * 119.97423 * 359.97438 * 22 21 20 25 25 C 1.38439 * 119.95243 * 359.97438 * 24 22 21 26 26 F 1.35098 * 120.01396 * 179.97438 * 25 24 22 27 27 H 0.96997 * 119.99665 * 180.02562 * 10 9 7 28 28 H 0.97001 * 119.99427 * 8.60984 * 15 6 3 29 29 H 1.08004 * 119.97138 * 359.97438 * 20 19 16 30 30 H 1.08004 * 119.99282 * 179.76603 * 21 20 19 31 31 H 1.08001 * 120.02373 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.7455 0.9918 5 7 3.8520 1.3352 1.7786 6 6 3.2741 -0.7330 -0.9775 7 6 2.5840 -1.5432 -1.8713 8 1 1.9528 -1.0987 -2.6266 9 6 2.7077 -2.9437 -1.7922 10 7 2.1489 -3.6995 -2.6952 11 14 3.6728 -3.7184 -0.3930 12 1 2.7426 -4.0913 0.7030 13 1 4.3697 -4.9336 -0.8856 14 1 4.6733 -2.7462 0.1162 15 7 4.6520 -0.6455 -1.0460 16 16 5.4631 -1.3309 -2.3166 17 8 4.6409 -2.3865 -2.7949 18 8 6.8015 -1.5247 -1.8806 19 6 5.5281 -0.1289 -3.6033 20 6 6.7362 0.4450 -3.9524 21 6 6.7880 1.3913 -4.9579 22 6 5.6297 1.7627 -5.6203 23 9 5.6805 2.6883 -6.6031 24 6 4.4203 1.1853 -5.2750 25 6 4.3698 0.2366 -4.2681 26 9 3.1898 -0.3275 -3.9296 27 1 2.2339 -4.6641 -2.6404 28 1 5.1436 -0.1826 -0.3496 29 1 7.6398 0.1566 -3.4358 30 1 7.7319 1.8418 -5.2273 31 1 3.5167 1.4740 -5.7912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256098464.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:02 Heat of formation + Delta-G solvation = -35.403811 kcal Electronic energy + Delta-G solvation = -27271.526880 eV Core-core repulsion = 22897.247941 eV Total energy + Delta-G solvation = -4374.278938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.028 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.39525 -48.99770 -38.92338 -37.93318 -36.86310 -35.69294 -35.21787 -35.01221 -33.16118 -31.38535 -30.74210 -30.20176 -27.15555 -23.72955 -23.34376 -21.87334 -20.06286 -18.98030 -18.53434 -18.14163 -17.64524 -17.32609 -17.15169 -16.30776 -16.05479 -15.82504 -15.36959 -15.24102 -14.73732 -14.57291 -14.48307 -13.80335 -13.54766 -13.06105 -12.93195 -12.70043 -12.66450 -12.37826 -12.25151 -12.13204 -12.08557 -11.86907 -11.84180 -11.82672 -11.71418 -11.30691 -11.17157 -11.01162 -10.61055 -10.42745 -10.26318 -9.55551 -9.15752 -9.03109 -7.47934 -7.02494 -5.12194 0.19334 0.53248 0.78794 1.98367 2.71473 2.88074 2.98146 3.03240 3.21434 3.43985 3.55801 3.73312 3.75420 3.79340 4.01242 4.10739 4.21650 4.47569 4.58979 4.72676 4.85064 4.99472 5.17934 5.25652 5.46072 5.57689 5.58929 5.63846 5.71995 5.90810 6.44348 6.60231 6.97133 7.37483 7.74497 8.05070 8.34911 8.47336 8.87357 9.97286 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.005859 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.181770 B = 4777.633518 C = 5218.014621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.327 3.673 3 C -0.239 4.239 4 C 0.294 3.706 5 N -0.502 5.502 6 C 0.410 3.590 7 C -0.505 4.505 8 H 0.142 0.858 9 C 0.164 3.836 10 N -0.758 5.758 11 Si 0.866 3.134 12 H -0.259 1.259 13 H -0.263 1.263 14 H -0.255 1.255 15 N -1.045 6.045 16 S 2.671 3.329 17 O -0.880 6.880 18 O -0.961 6.961 19 C -0.728 4.728 20 C 0.031 3.969 21 C -0.195 4.195 22 C 0.182 3.818 23 F -0.126 7.126 24 C -0.221 4.221 25 C 0.246 3.754 26 F -0.072 7.072 27 H 0.292 0.708 28 H 0.412 0.588 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.893 3.932 -7.828 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C 0.015 3.985 3 C -0.259 4.259 4 C -0.016 4.016 5 N -0.183 5.183 6 C 0.302 3.698 7 C -0.538 4.538 8 H 0.158 0.842 9 C -0.065 4.065 10 N -0.380 5.380 11 Si 0.689 3.311 12 H -0.184 1.184 13 H -0.188 1.188 14 H -0.179 1.179 15 N -0.786 5.786 16 S 2.761 3.239 17 O -0.870 6.870 18 O -0.951 6.951 19 C -0.813 4.813 20 C 0.012 3.988 21 C -0.215 4.215 22 C 0.162 3.838 23 F -0.104 7.104 24 C -0.241 4.241 25 C 0.225 3.775 26 F -0.049 7.049 27 H 0.103 0.897 28 H 0.247 0.753 29 H 0.178 0.822 30 H 0.167 0.833 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.296 3.725 -7.006 12.222 hybrid contribution 0.672 0.386 -0.014 0.775 sum 9.967 4.112 -7.019 12.866 Atomic orbital electron populations 1.81072 1.11932 1.13083 1.11442 1.24283 0.90916 0.91442 0.91860 1.13306 0.84024 1.24036 1.04530 1.25381 0.93028 0.90935 0.92209 1.81126 1.09581 1.14864 1.12729 1.17351 0.78349 0.86505 0.87606 1.19241 1.27988 0.90992 1.15596 0.84150 1.25369 0.90503 0.95701 0.94880 1.69204 1.32831 1.07244 1.28770 0.87069 0.81521 0.81203 0.81334 1.18397 1.18782 1.17857 1.54667 1.17000 1.68326 1.38614 1.03094 0.72843 0.74500 0.73414 1.93808 1.64450 1.48906 1.79801 1.93570 1.36150 1.84133 1.81238 1.31132 0.98743 1.26486 1.24947 1.20738 0.96163 0.89581 0.92284 1.21237 0.98211 1.02228 0.99823 1.17575 0.94004 0.86586 0.85613 1.91560 1.97176 1.62723 1.58940 1.21203 0.99196 1.01541 1.02155 1.16877 0.81477 0.88650 0.90540 1.91951 1.42373 1.81180 1.89439 0.89674 0.75323 0.82225 0.83270 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.31 18.54 41.84 0.78 -10.53 16 2 C 0.33 7.03 14.39 -22.47 -0.32 6.71 16 3 C -0.24 -4.75 5.88 -104.94 -0.62 -5.36 16 4 C 0.29 5.74 14.10 -22.48 -0.32 5.42 16 5 N -0.50 -10.14 18.53 41.82 0.78 -9.36 16 6 C 0.41 7.93 4.44 -83.60 -0.37 7.56 16 7 C -0.50 -10.75 4.76 -38.33 -0.18 -10.93 16 8 H 0.14 3.14 6.23 -52.49 -0.33 2.82 16 9 C 0.16 3.66 3.22 -17.21 -0.06 3.60 16 10 N -0.76 -17.61 13.88 55.59 0.77 -16.84 16 11 Si 0.87 17.76 25.46 -169.99 -4.33 13.44 16 12 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 13 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 14 H -0.25 -4.85 5.96 56.52 0.34 -4.52 16 15 N -1.04 -17.84 4.44 32.59 0.14 -17.69 16 16 S 2.67 44.97 4.82 -107.50 -0.52 44.45 16 17 O -0.88 -17.29 10.22 -57.18 -0.58 -17.87 16 18 O -0.96 -16.47 16.97 -57.18 -0.97 -17.44 16 19 C -0.73 -10.32 5.93 -39.50 -0.23 -10.55 16 20 C 0.03 0.36 9.54 -39.61 -0.38 -0.02 16 21 C -0.20 -1.93 10.03 -39.51 -0.40 -2.32 16 22 C 0.18 2.00 7.30 -39.43 -0.29 1.71 16 23 F -0.13 -1.33 17.27 2.25 0.04 -1.30 16 24 C -0.22 -2.67 10.01 -39.45 -0.39 -3.06 16 25 C 0.25 3.58 7.20 -39.43 -0.28 3.30 16 26 F -0.07 -1.23 11.81 2.25 0.03 -1.21 16 27 H 0.29 6.27 8.28 -40.82 -0.34 5.93 16 28 H 0.41 6.24 7.68 -34.47 -0.26 5.97 16 29 H 0.16 1.50 7.33 -52.48 -0.38 1.12 16 30 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -26.28 304.56 -4.14 -30.42 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -1.02 Total: 3.31 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.84 Total: -3.96 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 2.47 Total: -54.43 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.55 Total: -35.32 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.07 Total: -2.50 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -4.33 Total: 13.44 kcal Atomic # 16 Polarization: 44.97 SS G_CDS: -0.52 Total: 44.45 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.28 -4.14 -30.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256098464.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.984 kcal (2) G-P(sol) polarization free energy of solvation -26.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds