Wall clock time and date at job start Tue Mar 31 2020 22:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.43205 * 120.00109 * 233.10455 * 3 2 1 5 5 N 3.51041 * 140.68838 * 233.10401 * 2 1 3 6 6 C 1.41153 * 120.00212 * 53.10118 * 3 2 1 7 7 C 1.38986 * 119.99624 * 354.70514 * 6 3 2 8 8 H 1.08000 * 119.99841 * 68.74487 * 7 6 3 9 9 C 1.40819 * 120.00164 * 248.74115 * 7 6 3 10 10 N 1.30336 * 120.00272 * 185.57121 * 9 7 6 11 11 Si 1.86798 * 119.99687 * 5.56900 * 9 7 6 12 12 H 1.48505 * 109.47001 * 94.88414 * 11 9 7 13 13 H 1.48493 * 109.47222 * 214.88154 * 11 9 7 14 14 H 1.48510 * 109.47415 * 334.88385 * 11 9 7 15 15 N 1.38228 * 120.00156 * 174.70068 * 6 3 2 16 16 S 1.65594 * 120.00131 * 188.60848 * 15 6 3 17 17 O 1.42097 * 106.40289 * 334.24954 * 16 15 6 18 18 O 1.42095 * 106.40618 * 201.32932 * 16 15 6 19 19 C 1.76200 * 107.22013 * 87.78844 * 16 15 6 20 20 C 1.38229 * 119.99187 * 111.41565 * 19 16 15 21 21 C 1.38180 * 120.05473 * 180.23350 * 20 19 16 22 22 C 1.38500 * 120.02315 * 359.79050 * 21 20 19 23 23 F 1.35101 * 120.01121 * 179.97438 * 22 21 20 24 24 C 1.38392 * 119.97423 * 359.97438 * 22 21 20 25 25 C 1.38439 * 119.95243 * 359.97438 * 24 22 21 26 26 F 1.35098 * 120.01396 * 179.97438 * 25 24 22 27 27 H 0.96997 * 119.99665 * 180.02562 * 10 9 7 28 28 H 0.97001 * 119.99427 * 8.60984 * 15 6 3 29 29 H 1.08004 * 119.97138 * 359.97438 * 20 19 16 30 30 H 1.08004 * 119.99282 * 179.76603 * 21 20 19 31 31 H 1.08001 * 120.02373 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.7455 0.9918 5 7 3.8520 1.3352 1.7786 6 6 3.2741 -0.7330 -0.9775 7 6 2.5840 -1.5432 -1.8713 8 1 1.9528 -1.0987 -2.6266 9 6 2.7077 -2.9437 -1.7922 10 7 2.1489 -3.6995 -2.6952 11 14 3.6728 -3.7184 -0.3930 12 1 2.7426 -4.0913 0.7030 13 1 4.3697 -4.9336 -0.8856 14 1 4.6733 -2.7462 0.1162 15 7 4.6520 -0.6455 -1.0460 16 16 5.4631 -1.3309 -2.3166 17 8 4.6409 -2.3865 -2.7949 18 8 6.8015 -1.5247 -1.8806 19 6 5.5281 -0.1289 -3.6033 20 6 6.7362 0.4450 -3.9524 21 6 6.7880 1.3913 -4.9579 22 6 5.6297 1.7627 -5.6203 23 9 5.6805 2.6883 -6.6031 24 6 4.4203 1.1853 -5.2750 25 6 4.3698 0.2366 -4.2681 26 9 3.1898 -0.3275 -3.9296 27 1 2.2339 -4.6641 -2.6404 28 1 5.1436 -0.1826 -0.3496 29 1 7.6398 0.1566 -3.4358 30 1 7.7319 1.8418 -5.2273 31 1 3.5167 1.4740 -5.7912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256098464.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:01 Heat of formation + Delta-G solvation = -52.037400 kcal Electronic energy + Delta-G solvation = -27272.248166 eV Core-core repulsion = 22897.247941 eV Total energy + Delta-G solvation = -4375.000225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.028 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.25602 -50.15905 -39.88433 -39.47236 -38.28613 -37.15974 -36.76835 -36.73378 -34.80993 -32.33486 -31.86277 -31.63007 -28.81476 -24.70061 -24.32120 -23.46817 -21.57799 -20.32749 -19.81173 -19.41497 -18.99117 -18.65628 -18.27379 -17.65019 -17.11412 -16.92352 -16.79670 -16.41321 -16.03884 -15.66714 -15.55033 -15.18477 -14.68497 -14.61096 -14.56697 -14.29864 -13.91400 -13.69562 -13.65623 -13.60461 -13.55609 -13.43418 -13.35875 -13.16732 -12.97152 -12.76177 -12.67685 -12.45325 -12.15697 -12.02183 -11.71077 -10.74671 -10.47864 -10.09083 -9.09627 -8.70236 -6.79836 -0.98058 -0.60372 -0.13600 0.37529 1.17731 1.33757 1.35258 1.66263 1.80753 2.05696 2.09242 2.09698 2.33731 2.46422 2.61790 2.89344 3.07310 3.20795 3.25330 3.42810 3.60178 3.75781 4.00582 4.09791 4.27645 4.37099 4.53227 4.68524 4.75908 4.83887 5.04318 5.34213 5.52910 5.90902 6.11404 6.37886 6.68040 6.86068 7.15485 8.33104 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.005859 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.181770 B = 4777.633518 C = 5218.014621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.333 3.667 3 C -0.239 4.239 4 C 0.305 3.695 5 N -0.506 5.506 6 C 0.431 3.569 7 C -0.515 4.515 8 H 0.125 0.875 9 C 0.147 3.853 10 N -0.793 5.793 11 Si 0.872 3.128 12 H -0.259 1.259 13 H -0.260 1.260 14 H -0.235 1.235 15 N -1.041 6.041 16 S 2.676 3.324 17 O -0.910 6.910 18 O -0.963 6.963 19 C -0.732 4.732 20 C 0.031 3.969 21 C -0.176 4.176 22 C 0.187 3.813 23 F -0.120 7.120 24 C -0.221 4.221 25 C 0.219 3.781 26 F -0.096 7.096 27 H 0.294 0.706 28 H 0.424 0.576 29 H 0.183 0.817 30 H 0.189 0.811 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.309 5.391 -8.133 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C 0.022 3.978 3 C -0.259 4.259 4 C -0.004 4.004 5 N -0.187 5.187 6 C 0.321 3.679 7 C -0.549 4.549 8 H 0.143 0.857 9 C -0.079 4.079 10 N -0.418 5.418 11 Si 0.693 3.307 12 H -0.184 1.184 13 H -0.184 1.184 14 H -0.157 1.157 15 N -0.781 5.781 16 S 2.769 3.231 17 O -0.899 6.899 18 O -0.954 6.954 19 C -0.821 4.821 20 C 0.012 3.988 21 C -0.195 4.195 22 C 0.167 3.833 23 F -0.098 7.098 24 C -0.241 4.241 25 C 0.198 3.802 26 F -0.074 7.074 27 H 0.106 0.894 28 H 0.260 0.740 29 H 0.200 0.800 30 H 0.207 0.793 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 11.724 5.175 -7.264 14.731 hybrid contribution 0.029 0.084 -0.043 0.099 sum 11.753 5.259 -7.307 14.805 Atomic orbital electron populations 1.81066 1.12749 1.14081 1.12316 1.24533 0.91271 0.90805 0.91204 1.13248 0.83311 1.24421 1.04917 1.25135 0.92771 0.90655 0.91860 1.81145 1.09818 1.14948 1.12751 1.17097 0.79114 0.85241 0.86472 1.19090 1.28678 0.91026 1.16065 0.85749 1.25755 0.90445 0.96120 0.95563 1.69237 1.34651 1.07604 1.30265 0.86938 0.81717 0.81687 0.80348 1.18366 1.18374 1.15723 1.54452 1.16120 1.68136 1.39441 1.02579 0.72320 0.74715 0.73471 1.93772 1.65374 1.50758 1.80006 1.93565 1.35672 1.84599 1.81535 1.30701 1.00023 1.26906 1.24490 1.21088 0.95682 0.89361 0.92670 1.21633 0.99316 1.00598 0.97935 1.17654 0.93940 0.86222 0.85484 1.91584 1.97126 1.62416 1.58675 1.21342 1.00558 1.00785 1.01430 1.17109 0.80917 0.90077 0.92146 1.91887 1.43644 1.81886 1.89944 0.89405 0.73993 0.79976 0.79341 0.81210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.91 18.54 19.00 0.35 -23.56 16 2 C 0.33 14.29 14.39 88.33 1.27 15.56 16 3 C -0.24 -9.30 5.88 -20.07 -0.12 -9.42 16 4 C 0.31 11.43 14.10 88.34 1.25 12.67 16 5 N -0.51 -19.42 18.53 19.00 0.35 -19.07 16 6 C 0.43 16.46 4.44 39.03 0.17 16.63 16 7 C -0.52 -22.27 4.76 23.08 0.11 -22.16 16 8 H 0.13 5.80 6.23 -2.91 -0.02 5.78 16 9 C 0.15 6.64 3.22 85.55 0.28 6.91 16 10 N -0.79 -37.93 13.88 21.97 0.31 -37.63 16 11 Si 0.87 35.20 25.46 68.60 1.75 36.95 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 13 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 14 H -0.23 -8.53 5.96 99.48 0.59 -7.94 16 15 N -1.04 -34.22 4.44 -50.80 -0.23 -34.45 16 16 S 2.68 87.07 4.82 -56.49 -0.27 86.80 16 17 O -0.91 -35.79 10.22 -128.00 -1.31 -37.10 16 18 O -0.96 -31.05 16.97 -128.00 -2.17 -33.22 16 19 C -0.73 -19.59 5.93 22.32 0.13 -19.45 16 20 C 0.03 0.60 9.54 22.25 0.21 0.81 16 21 C -0.18 -2.71 10.03 22.32 0.22 -2.49 16 22 C 0.19 3.50 7.30 22.37 0.16 3.67 16 23 F -0.12 -2.14 17.27 44.97 0.78 -1.36 16 24 C -0.22 -4.99 10.01 22.35 0.22 -4.76 16 25 C 0.22 6.22 7.20 22.37 0.16 6.38 16 26 F -0.10 -3.37 11.81 44.97 0.53 -2.84 16 27 H 0.29 13.07 8.28 -92.71 -0.77 12.30 16 28 H 0.42 12.00 7.68 -96.74 -0.74 11.26 16 29 H 0.18 2.69 7.33 -2.91 -0.02 2.67 16 30 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -56.17 304.56 4.57 -51.60 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.41 Total: 9.53 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.07 Total: 4.35 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: 0.78 Total: -114.70 kcal Atomic # 8 Polarization: -66.84 SS G_CDS: -3.48 Total: -70.32 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 1.31 Total: -4.20 kcal Atomic # 14 Polarization: 35.20 SS G_CDS: 1.75 Total: 36.95 kcal Atomic # 16 Polarization: 87.07 SS G_CDS: -0.27 Total: 86.80 kcal Total: -56.17 4.57 -51.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256098464.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.434 kcal (2) G-P(sol) polarization free energy of solvation -56.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds