Wall clock time and date at job start Tue Mar 31 2020 22:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43201 * 120.00423 * 70.11565 * 3 2 1 5 5 N 3.51034 * 140.68803 * 70.11107 * 2 1 3 6 6 C 1.41160 * 120.00292 * 250.11541 * 3 2 1 7 7 C 1.38983 * 119.99578 * 7.07658 * 6 3 2 8 8 H 1.07999 * 120.00432 * 220.15105 * 7 6 3 9 9 C 1.40830 * 120.00150 * 40.15133 * 7 6 3 10 10 N 1.30344 * 119.99622 * 12.78051 * 9 7 6 11 11 Si 1.86796 * 120.00058 * 192.78034 * 9 7 6 12 12 H 1.48499 * 109.47246 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47163 * 119.99975 * 11 9 7 14 14 H 1.48503 * 109.47109 * 239.99799 * 11 9 7 15 15 N 1.38229 * 120.00307 * 187.07681 * 6 3 2 16 16 S 1.65601 * 119.99953 * 187.71559 * 15 6 3 17 17 O 1.42104 * 106.40030 * 198.54194 * 16 15 6 18 18 O 1.42102 * 106.40254 * 331.45891 * 16 15 6 19 19 C 1.76194 * 107.21840 * 85.00112 * 16 15 6 20 20 C 1.38210 * 119.99851 * 111.63940 * 19 16 15 21 21 C 1.38429 * 119.99487 * 179.77196 * 20 19 16 22 22 F 1.35107 * 119.99536 * 180.26889 * 21 20 19 23 23 C 1.38468 * 120.00590 * 0.52484 * 21 20 19 24 24 C 1.38163 * 119.99506 * 359.72878 * 23 21 20 25 25 C 1.38433 * 120.00146 * 291.91635 * 19 16 15 26 26 F 1.35101 * 119.99631 * 359.97196 * 25 19 16 27 27 H 0.97001 * 119.99197 * 184.92358 * 10 9 7 28 28 H 0.96997 * 120.00025 * 7.71915 * 15 6 3 29 29 H 1.07995 * 119.99914 * 0.02562 * 20 19 16 30 30 H 1.07995 * 120.00344 * 179.70035 * 23 21 20 31 31 H 1.08005 * 120.00279 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2842 -0.4208 -1.1662 5 7 3.8519 -0.7566 -2.0913 6 6 3.2736 0.4167 1.1496 7 6 2.5865 0.6848 2.3275 8 1 2.8715 1.5281 2.9391 9 6 1.5184 -0.1432 2.7238 10 7 1.3300 -1.2905 2.1346 11 14 0.3719 0.4027 4.0938 12 1 0.7976 1.7344 4.5943 13 1 -1.0157 0.4909 3.5723 14 1 0.4220 -0.5830 5.2034 15 7 4.6479 0.5576 1.1037 16 16 5.4963 0.8584 2.4937 17 8 6.7575 1.3741 2.0904 18 8 4.6124 1.5564 3.3602 19 6 5.8157 -0.6973 3.2567 20 6 7.1078 -1.1839 3.3194 21 6 7.3593 -2.4039 3.9231 22 9 8.6231 -2.8771 3.9892 23 6 6.3152 -3.1419 4.4545 24 6 5.0229 -2.6579 4.3872 25 6 4.7718 -1.4349 3.7884 26 9 3.5082 -0.9615 3.7226 27 1 0.5541 -1.8283 2.3572 28 1 5.1154 0.4803 0.2573 29 1 7.9217 -0.6103 2.9011 30 1 6.5108 -4.0960 4.9212 31 1 4.2082 -3.2336 4.8012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258949658.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:25 Heat of formation + Delta-G solvation = -63.648715 kcal Electronic energy + Delta-G solvation = -27415.664923 eV Core-core repulsion = 23040.161194 eV Total energy + Delta-G solvation = -4375.503729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.028 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.00501 -49.96601 -39.82075 -39.28262 -38.26977 -37.05967 -36.65571 -36.46961 -35.02415 -32.74741 -31.27943 -31.05643 -28.69953 -25.04526 -24.01629 -23.56671 -21.43731 -20.29040 -19.90137 -19.25163 -18.59011 -18.42961 -18.09286 -17.60025 -17.01687 -16.85137 -16.82154 -16.30343 -16.02563 -15.41738 -15.30938 -15.00093 -14.82901 -14.39662 -14.28339 -14.18947 -13.83772 -13.65487 -13.56816 -13.37571 -13.29540 -13.24361 -13.20112 -13.15662 -13.07797 -12.76813 -12.62203 -12.44770 -12.02048 -11.82815 -11.40824 -10.98521 -10.76028 -9.73522 -8.98707 -8.87042 -6.92900 -0.89867 -0.52544 -0.14881 0.73613 1.43356 1.50083 1.59138 1.73965 2.08867 2.11237 2.18039 2.35012 2.51068 2.65805 2.82248 2.93217 3.11698 3.29743 3.54697 3.60395 3.74493 3.88705 4.00662 4.25520 4.29070 4.56935 4.68074 4.74824 4.79733 4.94332 5.04574 5.42497 5.60592 5.90425 6.17529 6.48808 6.54032 7.17176 7.54611 7.97060 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.006072 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.537240 B = 4610.217645 C = 5366.025091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C 0.360 3.640 3 C -0.281 4.281 4 C 0.309 3.691 5 N -0.550 5.550 6 C 0.392 3.608 7 C -0.450 4.450 8 H 0.157 0.843 9 C 0.075 3.925 10 N -0.735 5.735 11 Si 0.944 3.056 12 H -0.243 1.243 13 H -0.279 1.279 14 H -0.246 1.246 15 N -1.038 6.038 16 S 2.708 3.292 17 O -0.965 6.965 18 O -0.934 6.934 19 C -0.702 4.702 20 C -0.037 4.037 21 C 0.056 3.944 22 F -0.133 7.133 23 C -0.052 4.052 24 C -0.149 4.149 25 C 0.182 3.818 26 F -0.088 7.088 27 H 0.302 0.698 28 H 0.422 0.578 29 H 0.171 0.829 30 H 0.189 0.811 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.433 -3.905 11.840 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.244 5.244 2 C 0.052 3.948 3 C -0.302 4.302 4 C 0.003 3.997 5 N -0.234 5.234 6 C 0.284 3.716 7 C -0.480 4.480 8 H 0.174 0.826 9 C -0.154 4.154 10 N -0.355 5.355 11 Si 0.765 3.235 12 H -0.165 1.165 13 H -0.205 1.205 14 H -0.170 1.170 15 N -0.781 5.781 16 S 2.799 3.201 17 O -0.956 6.956 18 O -0.924 6.924 19 C -0.790 4.790 20 C -0.057 4.057 21 C 0.035 3.965 22 F -0.111 7.111 23 C -0.070 4.070 24 C -0.168 4.168 25 C 0.160 3.840 26 F -0.066 7.066 27 H 0.114 0.886 28 H 0.258 0.742 29 H 0.188 0.812 30 H 0.206 0.794 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.786 -3.842 10.901 14.519 hybrid contribution -0.271 -0.662 0.093 0.722 sum 8.515 -4.505 10.994 14.617 Atomic orbital electron populations 1.80933 1.13031 1.18235 1.12243 1.24419 0.91352 0.89360 0.89698 1.12587 0.83120 1.42983 0.91491 1.25444 0.92383 0.90079 0.91793 1.81089 1.10518 1.19800 1.11953 1.16760 0.79179 0.84019 0.91596 1.20959 1.11405 1.11711 1.03967 0.82611 1.26496 0.96820 0.93064 0.99046 1.69504 1.24125 1.07839 1.34065 0.85634 0.77591 0.81656 0.78654 1.16543 1.20465 1.16983 1.53593 1.15163 1.83105 1.26249 1.01502 0.71905 0.73932 0.72718 1.93568 1.42232 1.77290 1.82496 1.93590 1.63164 1.70073 1.65548 1.30631 0.99749 1.26729 1.21913 1.20927 0.95345 0.94656 0.94723 1.17686 0.80243 0.94614 1.03926 1.91539 1.36807 1.88023 1.94743 1.21674 0.90034 1.00641 0.94680 1.21492 0.99179 0.94577 1.01559 1.17750 0.79694 0.92941 0.93600 1.91989 1.34910 1.87020 1.92649 0.88628 0.74194 0.81196 0.79388 0.80621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.79 18.34 19.00 0.35 -27.44 16 2 C 0.36 17.16 11.26 88.33 0.99 18.15 16 3 C -0.28 -12.42 5.33 -20.07 -0.11 -12.52 16 4 C 0.31 13.61 14.14 88.33 1.25 14.86 16 5 N -0.55 -24.82 18.54 19.01 0.35 -24.47 16 6 C 0.39 15.80 6.12 39.03 0.24 16.04 16 7 C -0.45 -18.35 4.76 23.08 0.11 -18.24 16 8 H 0.16 6.33 5.14 -4.39 -0.02 6.31 16 9 C 0.08 3.06 2.10 85.55 0.18 3.24 16 10 N -0.74 -30.85 10.01 21.98 0.22 -30.63 16 11 Si 0.94 33.48 29.52 68.60 2.03 35.50 16 12 H -0.24 -8.44 7.11 99.48 0.71 -7.73 16 13 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 14 H -0.25 -7.90 7.11 99.48 0.71 -7.19 16 15 N -1.04 -35.52 5.72 -50.80 -0.29 -35.81 16 16 S 2.71 85.88 5.54 -56.49 -0.31 85.56 16 17 O -0.97 -31.39 16.97 -128.00 -2.17 -33.56 16 18 O -0.93 -33.30 13.22 -128.00 -1.69 -34.99 16 19 C -0.70 -19.74 5.92 22.31 0.13 -19.60 16 20 C -0.04 -0.88 9.53 22.31 0.21 -0.66 16 21 C 0.06 1.16 7.30 22.37 0.16 1.32 16 22 F -0.13 -2.71 17.27 44.97 0.78 -1.94 16 23 C -0.05 -0.88 10.02 22.31 0.22 -0.65 16 24 C -0.15 -3.09 10.02 22.31 0.22 -2.87 16 25 C 0.18 5.16 7.20 22.37 0.16 5.32 16 26 F -0.09 -2.99 10.09 44.97 0.45 -2.53 16 27 H 0.30 12.08 8.29 -92.71 -0.77 11.31 16 28 H 0.42 13.34 7.75 -96.75 -0.75 12.59 16 29 H 0.17 3.62 7.33 -2.91 -0.02 3.60 16 30 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -56.51 304.88 4.00 -52.51 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.51 Total: 13.41 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 3.78 Total: 4.39 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: 0.63 Total: -118.35 kcal Atomic # 8 Polarization: -64.69 SS G_CDS: -3.86 Total: -68.56 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 1.23 Total: -4.47 kcal Atomic # 14 Polarization: 33.48 SS G_CDS: 2.03 Total: 35.50 kcal Atomic # 16 Polarization: 85.88 SS G_CDS: -0.31 Total: 85.56 kcal Total: -56.51 4.00 -52.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258949658.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.137 kcal (2) G-P(sol) polarization free energy of solvation -56.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds