Wall clock time and date at job start Tue Mar 31 2020 22:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.43195 * 119.99581 * 101.08002 * 3 2 1 5 5 N 3.51036 * 140.68912 * 101.07388 * 2 1 3 6 6 C 1.41143 * 120.00030 * 281.07851 * 3 2 1 7 7 C 1.38997 * 120.00036 * 6.71843 * 6 3 2 8 8 H 1.08001 * 119.99926 * 226.78221 * 7 6 3 9 9 C 1.40817 * 120.00442 * 46.77387 * 7 6 3 10 10 N 1.30339 * 119.99581 * 9.95215 * 9 7 6 11 11 Si 1.86794 * 120.00223 * 189.94836 * 9 7 6 12 12 H 1.48496 * 109.46947 * 60.00446 * 11 9 7 13 13 H 1.48501 * 109.47014 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47332 * 300.00056 * 11 9 7 15 15 N 1.38224 * 120.00171 * 186.71460 * 6 3 2 16 16 S 1.65607 * 120.00221 * 184.01962 * 15 6 3 17 17 O 1.42101 * 106.40111 * 309.37054 * 16 15 6 18 18 O 1.42097 * 106.39976 * 176.45025 * 16 15 6 19 19 C 1.76199 * 107.21453 * 62.91000 * 16 15 6 20 20 C 1.38415 * 120.02662 * 78.99737 * 19 16 15 21 21 F 1.35100 * 120.01480 * 359.69850 * 20 19 16 22 22 C 1.38478 * 119.97539 * 179.97438 * 20 19 16 23 23 C 1.38207 * 120.02362 * 359.97438 * 22 20 19 24 24 C 1.38206 * 120.05111 * 359.97438 * 23 22 20 25 25 C 1.38420 * 120.02254 * 258.96917 * 19 16 15 26 26 F 1.35098 * 120.01343 * 0.02562 * 25 19 16 27 27 H 0.96997 * 120.00114 * 184.98334 * 10 9 7 28 28 H 0.97005 * 120.00003 * 4.02223 * 15 6 3 29 29 H 1.08001 * 119.98701 * 179.97438 * 22 20 19 30 30 H 1.07997 * 119.97092 * 180.02562 * 23 22 20 31 31 H 1.08000 * 119.98967 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.2393 -1.2170 5 7 3.8520 0.4272 -2.1825 6 6 3.2739 -0.2339 1.1995 7 6 2.5862 -0.6029 2.3498 8 1 2.8025 -0.1144 3.2884 9 6 1.6074 -1.6136 2.2913 10 7 1.4797 -2.3355 1.2136 11 14 0.4923 -1.9199 3.7582 12 1 -0.2814 -0.6882 4.0574 13 1 -0.4439 -3.0293 3.4452 14 1 1.3159 -2.2860 4.9383 15 7 4.6489 -0.0967 1.2305 16 16 5.4873 -0.4679 2.6096 17 8 4.8432 0.2254 3.6696 18 8 6.8642 -0.3055 2.2981 19 6 5.2466 -2.1856 2.9198 20 6 5.9722 -3.1261 2.2094 21 9 6.8611 -2.7277 1.2733 22 6 5.7826 -4.4758 2.4544 23 6 4.8695 -4.8838 3.4083 24 6 4.1452 -3.9456 4.1191 25 6 4.3321 -2.5954 3.8747 26 9 3.6232 -1.6785 4.5689 27 1 0.7598 -2.9820 1.1454 28 1 5.1229 0.2170 0.4444 29 1 6.3483 -5.2098 1.8999 30 1 4.7226 -5.9366 3.5991 31 1 3.4317 -4.2655 4.8640 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259071917.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:27 Heat of formation + Delta-G solvation = -61.639964 kcal Electronic energy + Delta-G solvation = -27927.609303 eV Core-core repulsion = 23552.192680 eV Total energy + Delta-G solvation = -4375.416623 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.028 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.18235 -48.91196 -38.70315 -37.69483 -36.83699 -35.63304 -35.02894 -34.78144 -33.48174 -31.34500 -30.37557 -29.73363 -27.11830 -23.76526 -22.98550 -22.12080 -19.98855 -18.89341 -18.29203 -18.06078 -17.36460 -17.23316 -16.88315 -16.11653 -15.97922 -15.56983 -15.37305 -15.13997 -15.04271 -14.63376 -14.42125 -13.49438 -13.22283 -12.85197 -12.64349 -12.57422 -12.38057 -12.27544 -12.16195 -12.09226 -11.94438 -11.84783 -11.75895 -11.63034 -11.52157 -11.20973 -11.03197 -10.92629 -10.72710 -10.64329 -10.21203 -9.64505 -9.52289 -8.75752 -7.42805 -7.26285 -5.45712 0.37084 0.68770 0.96103 2.28117 2.86175 2.88702 2.92063 2.99992 3.25781 3.61853 3.72728 3.77762 3.89957 4.04478 4.19847 4.32468 4.34411 4.37290 4.59436 4.99090 5.02286 5.21943 5.43238 5.46124 5.55292 5.70601 5.73028 5.90233 5.98843 6.25599 6.57460 6.62792 6.92651 7.37486 7.68289 7.99135 8.05507 8.79305 9.23647 9.55040 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.008168 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.776891 B = 3427.251343 C = 4606.880012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.352 3.648 3 C -0.241 4.241 4 C 0.299 3.701 5 N -0.520 5.520 6 C 0.423 3.577 7 C -0.511 4.511 8 H 0.142 0.858 9 C 0.096 3.904 10 N -0.736 5.736 11 Si 0.905 3.095 12 H -0.251 1.251 13 H -0.273 1.273 14 H -0.246 1.246 15 N -1.043 6.043 16 S 2.702 3.298 17 O -0.926 6.926 18 O -0.953 6.953 19 C -0.741 4.741 20 C 0.228 3.772 21 F -0.113 7.113 22 C -0.193 4.193 23 C -0.008 4.008 24 C -0.196 4.196 25 C 0.260 3.740 26 F -0.088 7.088 27 H 0.300 0.700 28 H 0.417 0.583 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 -8.586 9.185 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C 0.041 3.959 3 C -0.260 4.260 4 C -0.009 4.009 5 N -0.202 5.202 6 C 0.316 3.684 7 C -0.543 4.543 8 H 0.159 0.841 9 C -0.134 4.134 10 N -0.356 5.356 11 Si 0.727 3.273 12 H -0.175 1.175 13 H -0.198 1.198 14 H -0.170 1.170 15 N -0.787 5.787 16 S 2.791 3.209 17 O -0.916 6.916 18 O -0.944 6.944 19 C -0.828 4.828 20 C 0.207 3.793 21 F -0.091 7.091 22 C -0.212 4.212 23 C -0.026 4.026 24 C -0.215 4.215 25 C 0.238 3.762 26 F -0.065 7.065 27 H 0.112 0.888 28 H 0.252 0.748 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.083 -7.977 8.240 12.982 hybrid contribution -0.482 -0.759 0.076 0.902 sum 5.601 -8.737 8.316 13.299 Atomic orbital electron populations 1.80961 1.12274 1.17660 1.09577 1.24161 0.90948 0.89341 0.91416 1.12732 0.83809 1.42009 0.87480 1.25438 0.92795 0.90580 0.92115 1.81096 1.09808 1.18715 1.10581 1.16839 0.78514 0.80341 0.92741 1.20159 1.18996 1.17828 0.97363 0.84066 1.25903 0.95749 0.93441 0.98328 1.69458 1.25505 1.13876 1.26781 0.86362 0.79779 0.80252 0.80956 1.17465 1.19825 1.16997 1.54083 1.16089 1.76089 1.32402 1.01837 0.72440 0.73386 0.73248 1.93625 1.75415 1.69378 1.53180 1.93617 1.30978 1.85533 1.84235 1.30638 1.12644 1.27470 1.12056 1.16726 0.85484 0.92274 0.84820 1.91644 1.64630 1.91373 1.61416 1.21162 1.03466 0.93799 1.02788 1.21041 0.90697 1.00017 0.90851 1.21285 1.04403 0.91025 1.04812 1.16608 0.85723 0.86947 0.86900 1.91707 1.74335 1.64949 1.75507 0.88828 0.74760 0.83554 0.83592 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.89 18.54 41.84 0.78 -12.12 16 2 C 0.35 8.38 11.75 -22.47 -0.26 8.12 16 3 C -0.24 -5.37 5.33 -104.95 -0.56 -5.93 16 4 C 0.30 6.64 14.11 -22.48 -0.32 6.32 16 5 N -0.52 -11.83 18.54 41.83 0.78 -11.05 16 6 C 0.42 8.85 6.08 -83.60 -0.51 8.34 16 7 C -0.51 -10.74 4.70 -38.33 -0.18 -10.92 16 8 H 0.14 2.94 4.82 -52.49 -0.25 2.69 16 9 C 0.10 1.98 3.98 -17.21 -0.07 1.91 16 10 N -0.74 -15.77 11.00 55.59 0.61 -15.16 16 11 Si 0.90 16.57 28.26 -169.99 -4.80 11.77 16 12 H -0.25 -4.84 7.11 56.52 0.40 -4.44 16 13 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 14 H -0.25 -4.06 6.40 56.52 0.36 -3.70 16 15 N -1.04 -19.38 5.74 32.59 0.19 -19.20 16 16 S 2.70 48.58 5.16 -107.50 -0.56 48.02 16 17 O -0.93 -17.85 13.59 -57.17 -0.78 -18.62 16 18 O -0.95 -17.95 16.69 -57.17 -0.95 -18.91 16 19 C -0.74 -12.22 5.44 -39.45 -0.21 -12.44 16 20 C 0.23 3.41 7.19 -39.43 -0.28 3.13 16 21 F -0.11 -1.79 15.73 2.25 0.04 -1.75 16 22 C -0.19 -2.22 10.03 -39.50 -0.40 -2.62 16 23 C -0.01 -0.08 10.04 -39.60 -0.40 -0.48 16 24 C -0.20 -2.39 10.02 -39.51 -0.40 -2.79 16 25 C 0.26 4.08 6.07 -39.43 -0.24 3.84 16 26 F -0.09 -1.51 10.39 2.25 0.02 -1.48 16 27 H 0.30 6.10 8.29 -40.82 -0.34 5.76 16 28 H 0.42 7.20 7.70 -34.48 -0.27 6.94 16 29 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -27.47 303.99 -4.89 -32.36 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -0.96 Total: 5.06 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -3.83 Total: -3.51 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 2.35 Total: -57.52 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.73 Total: -37.53 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.06 Total: -3.23 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -4.80 Total: 11.77 kcal Atomic # 16 Polarization: 48.58 SS G_CDS: -0.56 Total: 48.02 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.47 -4.89 -32.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259071917.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.280 kcal (2) G-P(sol) polarization free energy of solvation -27.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds