Wall clock time and date at job start Tue Mar 31 2020 22:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.43195 * 119.99581 * 101.08002 * 3 2 1 5 5 N 3.51036 * 140.68912 * 101.07388 * 2 1 3 6 6 C 1.41143 * 120.00030 * 281.07851 * 3 2 1 7 7 C 1.38997 * 120.00036 * 6.71843 * 6 3 2 8 8 H 1.08001 * 119.99926 * 226.78221 * 7 6 3 9 9 C 1.40817 * 120.00442 * 46.77387 * 7 6 3 10 10 N 1.30339 * 119.99581 * 9.95215 * 9 7 6 11 11 Si 1.86794 * 120.00223 * 189.94836 * 9 7 6 12 12 H 1.48496 * 109.46947 * 60.00446 * 11 9 7 13 13 H 1.48501 * 109.47014 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47332 * 300.00056 * 11 9 7 15 15 N 1.38224 * 120.00171 * 186.71460 * 6 3 2 16 16 S 1.65607 * 120.00221 * 184.01962 * 15 6 3 17 17 O 1.42101 * 106.40111 * 309.37054 * 16 15 6 18 18 O 1.42097 * 106.39976 * 176.45025 * 16 15 6 19 19 C 1.76199 * 107.21453 * 62.91000 * 16 15 6 20 20 C 1.38415 * 120.02662 * 78.99737 * 19 16 15 21 21 F 1.35100 * 120.01480 * 359.69850 * 20 19 16 22 22 C 1.38478 * 119.97539 * 179.97438 * 20 19 16 23 23 C 1.38207 * 120.02362 * 359.97438 * 22 20 19 24 24 C 1.38206 * 120.05111 * 359.97438 * 23 22 20 25 25 C 1.38420 * 120.02254 * 258.96917 * 19 16 15 26 26 F 1.35098 * 120.01343 * 0.02562 * 25 19 16 27 27 H 0.96997 * 120.00114 * 184.98334 * 10 9 7 28 28 H 0.97005 * 120.00003 * 4.02223 * 15 6 3 29 29 H 1.08001 * 119.98701 * 179.97438 * 22 20 19 30 30 H 1.07997 * 119.97092 * 180.02562 * 23 22 20 31 31 H 1.08000 * 119.98967 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.2393 -1.2170 5 7 3.8520 0.4272 -2.1825 6 6 3.2739 -0.2339 1.1995 7 6 2.5862 -0.6029 2.3498 8 1 2.8025 -0.1144 3.2884 9 6 1.6074 -1.6136 2.2913 10 7 1.4797 -2.3355 1.2136 11 14 0.4923 -1.9199 3.7582 12 1 -0.2814 -0.6882 4.0574 13 1 -0.4439 -3.0293 3.4452 14 1 1.3159 -2.2860 4.9383 15 7 4.6489 -0.0967 1.2305 16 16 5.4873 -0.4679 2.6096 17 8 4.8432 0.2254 3.6696 18 8 6.8642 -0.3055 2.2981 19 6 5.2466 -2.1856 2.9198 20 6 5.9722 -3.1261 2.2094 21 9 6.8611 -2.7277 1.2733 22 6 5.7826 -4.4758 2.4544 23 6 4.8695 -4.8838 3.4083 24 6 4.1452 -3.9456 4.1191 25 6 4.3321 -2.5954 3.8747 26 9 3.6232 -1.6785 4.5689 27 1 0.7598 -2.9820 1.1454 28 1 5.1229 0.2170 0.4444 29 1 6.3483 -5.2098 1.8999 30 1 4.7226 -5.9366 3.5991 31 1 3.4317 -4.2655 4.8640 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259071917.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:27 Heat of formation + Delta-G solvation = -79.514994 kcal Electronic energy + Delta-G solvation = -27928.384423 eV Core-core repulsion = 23552.192680 eV Total energy + Delta-G solvation = -4376.191743 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.028 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.31363 -50.08316 -39.69339 -39.31606 -38.34053 -37.11036 -36.77916 -36.58839 -35.12544 -32.37115 -31.40634 -31.35429 -28.80263 -24.80012 -24.03962 -23.72482 -21.52960 -20.32261 -19.86040 -19.32644 -18.62927 -18.45695 -18.37544 -17.58669 -17.23946 -16.79855 -16.67343 -16.35085 -16.21704 -15.93616 -15.52764 -15.02536 -14.92195 -14.39275 -14.08966 -13.93924 -13.81506 -13.70475 -13.54891 -13.46185 -13.35878 -13.32859 -13.21696 -13.15195 -13.04091 -12.83960 -12.70513 -12.63093 -12.13874 -11.95342 -11.75328 -11.15773 -10.59965 -9.77443 -9.04032 -8.95093 -7.15181 -0.92521 -0.45754 -0.03803 0.63172 1.38322 1.42776 1.49964 1.65380 1.95296 2.12530 2.19153 2.24414 2.44913 2.53595 2.69769 2.77645 3.04403 3.30783 3.40529 3.68372 3.75632 3.81804 4.15509 4.16539 4.48181 4.51175 4.56985 4.90257 4.93203 4.96181 5.10114 5.27396 5.68056 5.75560 6.03693 6.32986 6.41724 7.02334 7.38552 7.95321 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.008168 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.776891 B = 3427.251343 C = 4606.880012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C 0.355 3.645 3 C -0.262 4.262 4 C 0.306 3.694 5 N -0.534 5.534 6 C 0.428 3.572 7 C -0.511 4.511 8 H 0.142 0.858 9 C 0.077 3.923 10 N -0.750 5.750 11 Si 0.931 3.069 12 H -0.270 1.270 13 H -0.265 1.265 14 H -0.215 1.215 15 N -1.042 6.042 16 S 2.707 3.293 17 O -0.945 6.945 18 O -0.968 6.968 19 C -0.758 4.758 20 C 0.200 3.800 21 F -0.126 7.126 22 C -0.181 4.181 23 C 0.012 3.988 24 C -0.191 4.191 25 C 0.230 3.770 26 F -0.104 7.104 27 H 0.304 0.696 28 H 0.421 0.579 29 H 0.180 0.820 30 H 0.200 0.800 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 -11.511 10.563 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.229 5.229 2 C 0.045 3.955 3 C -0.281 4.281 4 C -0.001 4.001 5 N -0.217 5.217 6 C 0.320 3.680 7 C -0.543 4.543 8 H 0.159 0.841 9 C -0.151 4.151 10 N -0.370 5.370 11 Si 0.751 3.249 12 H -0.195 1.195 13 H -0.189 1.189 14 H -0.137 1.137 15 N -0.784 5.784 16 S 2.799 3.201 17 O -0.935 6.935 18 O -0.959 6.959 19 C -0.849 4.849 20 C 0.179 3.821 21 F -0.104 7.104 22 C -0.201 4.201 23 C -0.005 4.005 24 C -0.210 4.210 25 C 0.209 3.791 26 F -0.082 7.082 27 H 0.116 0.884 28 H 0.257 0.743 29 H 0.197 0.803 30 H 0.217 0.783 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.175 -10.865 9.602 15.760 hybrid contribution -0.446 0.024 -0.276 0.525 sum 5.730 -10.841 9.326 15.405 Atomic orbital electron populations 1.80939 1.12779 1.18992 1.10189 1.24407 0.91274 0.88846 0.90927 1.12755 0.83333 1.44028 0.88031 1.25409 0.92550 0.90224 0.91940 1.81087 1.10168 1.19638 1.10794 1.16856 0.79257 0.79621 0.92312 1.20325 1.19056 1.17659 0.97213 0.84064 1.26373 0.96026 0.92969 0.99745 1.69482 1.25825 1.14043 1.27691 0.85983 0.78941 0.79649 0.80361 1.19484 1.18903 1.13693 1.54022 1.15398 1.76094 1.32877 1.01388 0.71871 0.74215 0.72576 1.93592 1.75585 1.70892 1.53446 1.93591 1.31594 1.86385 1.84312 1.30263 1.14735 1.25926 1.13947 1.17129 0.86007 0.93665 0.85271 1.91608 1.65140 1.91698 1.61972 1.21678 1.03184 0.92620 1.02569 1.21705 0.88200 1.02161 0.88458 1.21762 1.04605 0.89578 1.05088 1.17010 0.86361 0.88241 0.87512 1.91653 1.74807 1.65843 1.75900 0.88426 0.74331 0.80264 0.78320 0.80682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.03 18.54 19.01 0.35 -26.68 16 2 C 0.35 17.01 11.75 88.33 1.04 18.05 16 3 C -0.26 -11.77 5.33 -20.07 -0.11 -11.88 16 4 C 0.31 13.73 14.11 88.33 1.25 14.97 16 5 N -0.53 -24.42 18.54 19.00 0.35 -24.07 16 6 C 0.43 18.03 6.08 39.03 0.24 18.27 16 7 C -0.51 -21.31 4.70 23.08 0.11 -21.21 16 8 H 0.14 5.90 4.82 -2.91 -0.01 5.89 16 9 C 0.08 3.12 3.98 85.55 0.34 3.46 16 10 N -0.75 -31.35 11.00 21.97 0.24 -31.11 16 11 Si 0.93 31.99 28.26 68.60 1.94 33.93 16 12 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 13 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 14 H -0.21 -6.28 6.40 99.48 0.64 -5.65 16 15 N -1.04 -39.37 5.74 -50.80 -0.29 -39.66 16 16 S 2.71 98.60 5.16 -56.49 -0.29 98.31 16 17 O -0.95 -37.06 13.59 -128.00 -1.74 -38.80 16 18 O -0.97 -37.21 16.69 -128.00 -2.14 -39.35 16 19 C -0.76 -24.33 5.44 22.36 0.12 -24.21 16 20 C 0.20 5.68 7.19 22.37 0.16 5.84 16 21 F -0.13 -3.94 15.73 44.97 0.71 -3.23 16 22 C -0.18 -3.45 10.03 22.32 0.22 -3.23 16 23 C 0.01 0.18 10.04 22.25 0.22 0.41 16 24 C -0.19 -3.87 10.02 22.32 0.22 -3.64 16 25 C 0.23 6.78 6.07 22.37 0.14 6.91 16 26 F -0.10 -3.46 10.39 44.97 0.47 -2.99 16 27 H 0.30 11.97 8.29 -92.71 -0.77 11.20 16 28 H 0.42 14.95 7.70 -96.74 -0.74 14.20 16 29 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.20 0.88 8.06 -2.91 -0.02 0.85 16 31 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -60.19 303.99 4.01 -56.18 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.45 Total: 13.73 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 3.95 Total: 3.73 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: 0.65 Total: -121.51 kcal Atomic # 8 Polarization: -74.27 SS G_CDS: -3.88 Total: -78.15 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 1.17 Total: -6.22 kcal Atomic # 14 Polarization: 31.99 SS G_CDS: 1.94 Total: 33.93 kcal Atomic # 16 Polarization: 98.60 SS G_CDS: -0.29 Total: 98.31 kcal Total: -60.19 4.01 -56.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259071917.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.334 kcal (2) G-P(sol) polarization free energy of solvation -60.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds