Wall clock time and date at job start Tue Mar 31 2020 22:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.43198 * 119.99874 * 115.02601 * 3 2 1 5 5 N 3.51032 * 140.68946 * 115.01848 * 2 1 3 6 6 C 1.41152 * 120.00139 * 295.01847 * 3 2 1 7 7 C 1.38982 * 119.99873 * 6.17313 * 6 3 2 8 8 H 1.07997 * 120.00246 * 223.85684 * 7 6 3 9 9 C 1.40822 * 120.00222 * 43.86458 * 7 6 3 10 10 N 1.30337 * 120.00278 * 209.73284 * 9 7 6 11 11 Si 1.86799 * 119.99949 * 29.72251 * 9 7 6 12 12 H 1.48507 * 109.46876 * 93.03371 * 11 9 7 13 13 H 1.48500 * 109.47360 * 213.03244 * 11 9 7 14 14 H 1.48500 * 109.47477 * 333.03876 * 11 9 7 15 15 N 1.38232 * 119.99828 * 186.16897 * 6 3 2 16 16 S 1.65604 * 119.99797 * 185.50289 * 15 6 3 17 17 O 1.42099 * 106.40274 * 308.70997 * 16 15 6 18 18 O 1.42100 * 106.40246 * 175.79023 * 16 15 6 19 19 C 1.76205 * 107.21374 * 62.25144 * 16 15 6 20 20 C 1.38204 * 119.97163 * 263.52903 * 19 16 15 21 21 C 1.38478 * 120.02286 * 179.76696 * 20 19 16 22 22 F 1.35101 * 120.01187 * 180.27685 * 21 20 19 23 23 C 1.38415 * 119.97432 * 0.53621 * 21 20 19 24 24 C 1.38417 * 119.94817 * 359.72055 * 23 21 20 25 25 F 1.35107 * 120.01343 * 179.97438 * 24 23 21 26 26 C 1.38202 * 119.97635 * 83.80974 * 19 16 15 27 27 H 0.96996 * 120.00428 * 179.97438 * 10 9 7 28 28 H 0.97003 * 120.00205 * 5.51404 * 15 6 3 29 29 H 1.08006 * 119.99108 * 0.02562 * 20 19 16 30 30 H 1.08004 * 120.02500 * 179.69779 * 23 21 20 31 31 H 1.08006 * 119.98600 * 359.97438 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.5256 -1.1237 5 7 3.8521 0.9405 -2.0152 6 6 3.2740 -0.5160 1.1077 7 6 2.5854 -1.1411 2.1405 8 1 2.8397 -0.9249 3.1676 9 6 1.5563 -2.0567 1.8477 10 7 0.5601 -2.2039 2.6752 11 14 1.6187 -3.0600 0.2733 12 1 2.2757 -4.3642 0.5432 13 1 0.2376 -3.2941 -0.2196 14 1 2.3926 -2.3195 -0.7553 15 7 4.6503 -0.4003 1.1652 16 16 5.4914 -1.1241 2.3944 17 8 4.8665 -0.7152 3.6034 18 8 6.8688 -0.9079 2.1198 19 6 5.2234 -2.8603 2.2580 20 6 4.2435 -3.4694 3.0188 21 6 4.0286 -4.8330 2.9089 22 9 3.0669 -5.4274 3.6486 23 6 4.8032 -5.5877 2.0450 24 6 5.7879 -4.9773 1.2875 25 9 6.5450 -5.7128 0.4442 26 6 5.9970 -3.6127 1.3948 27 1 -0.1490 -2.8343 2.4734 28 1 5.1233 0.1051 0.4856 29 1 3.6422 -2.8811 3.6962 30 1 4.6396 -6.6521 1.9622 31 1 6.7653 -3.1362 0.8038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259314138.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:29 Heat of formation + Delta-G solvation = -85.957758 kcal Electronic energy + Delta-G solvation = -27219.849578 eV Core-core repulsion = 22843.378456 eV Total energy + Delta-G solvation = -4376.471122 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.028 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.11706 -50.09418 -39.99115 -39.42547 -38.39478 -37.09704 -36.80545 -36.79247 -35.43308 -32.52600 -31.86652 -31.55033 -28.91403 -25.02388 -24.09516 -23.69486 -21.48730 -20.51296 -20.05339 -19.39854 -18.70707 -18.42167 -17.81444 -17.59977 -17.19855 -17.10570 -17.02866 -16.81794 -16.41295 -16.06164 -15.43697 -15.27438 -14.94623 -14.70512 -14.39056 -14.07206 -13.90797 -13.81122 -13.59966 -13.59123 -13.48450 -13.44631 -13.39541 -13.17416 -13.03973 -12.95152 -12.81243 -12.69038 -12.38492 -12.11064 -11.89121 -11.29415 -10.61857 -9.93702 -9.31539 -9.13859 -7.30728 -0.96938 -0.58876 -0.22913 0.46904 1.18205 1.24711 1.37222 1.60746 1.85893 1.98875 2.01023 2.12052 2.31490 2.38157 2.57758 2.71463 2.90746 3.20260 3.49307 3.55818 3.62506 3.63366 3.88073 3.98289 4.08640 4.29677 4.49120 4.63475 4.72647 4.83586 4.98045 5.14105 5.51447 5.70167 5.92684 6.00514 6.32324 6.96683 7.17617 7.65458 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.006964 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.733086 B = 4019.839971 C = 4842.134554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.317 3.683 3 C -0.288 4.288 4 C 0.310 3.690 5 N -0.522 5.522 6 C 0.389 3.611 7 C -0.477 4.477 8 H 0.154 0.846 9 C 0.103 3.897 10 N -0.729 5.729 11 Si 0.853 3.147 12 H -0.229 1.229 13 H -0.277 1.277 14 H -0.209 1.209 15 N -1.035 6.035 16 S 2.718 3.282 17 O -0.948 6.948 18 O -0.955 6.955 19 C -0.620 4.620 20 C -0.045 4.045 21 C 0.094 3.906 22 F -0.129 7.129 23 C -0.128 4.128 24 C 0.103 3.897 25 F -0.124 7.124 26 C -0.061 4.061 27 H 0.309 0.691 28 H 0.429 0.571 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.800 -9.760 2.740 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C 0.009 3.991 3 C -0.308 4.308 4 C 0.002 3.998 5 N -0.204 5.204 6 C 0.281 3.719 7 C -0.507 4.507 8 H 0.171 0.829 9 C -0.131 4.131 10 N -0.347 5.347 11 Si 0.671 3.329 12 H -0.153 1.153 13 H -0.202 1.202 14 H -0.130 1.130 15 N -0.779 5.779 16 S 2.809 3.191 17 O -0.938 6.938 18 O -0.946 6.946 19 C -0.707 4.707 20 C -0.065 4.065 21 C 0.074 3.926 22 F -0.108 7.108 23 C -0.147 4.147 24 C 0.083 3.917 25 F -0.102 7.102 26 C -0.081 4.081 27 H 0.121 0.879 28 H 0.267 0.733 29 H 0.183 0.817 30 H 0.199 0.801 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.240 -8.923 2.267 13.044 hybrid contribution -0.682 -1.089 -0.753 1.489 sum 8.558 -10.013 1.514 13.258 Atomic orbital electron populations 1.81075 1.12735 1.17121 1.10286 1.24777 0.91751 0.90786 0.91800 1.12717 0.82728 1.37015 0.98380 1.25101 0.92643 0.90652 0.91429 1.81131 1.09969 1.17626 1.11678 1.16566 0.80246 0.85319 0.89800 1.20020 1.13005 1.20466 0.97200 0.82937 1.26342 0.91747 0.96348 0.98677 1.69425 1.04421 1.24779 1.36090 0.86870 0.81435 0.81862 0.82728 1.15271 1.20186 1.12978 1.53729 1.14294 1.63904 1.45947 1.01329 0.71812 0.73442 0.72534 1.93593 1.76422 1.80291 1.43452 1.93609 1.30695 1.85390 1.84891 1.30382 1.06615 1.25715 1.07968 1.21279 0.94447 0.93719 0.97093 1.17401 0.89768 0.90985 0.94427 1.91554 1.60822 1.83705 1.74694 1.21582 0.94556 1.03385 0.95204 1.17184 0.92771 0.89206 0.92534 1.91569 1.73796 1.76601 1.68245 1.21182 0.98207 0.92620 0.96085 0.87868 0.73309 0.81655 0.80144 0.80271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.10 18.44 19.00 0.35 -24.75 16 2 C 0.32 14.10 10.90 88.33 0.96 15.07 16 3 C -0.29 -11.45 4.01 -20.07 -0.08 -11.53 16 4 C 0.31 12.09 14.12 88.33 1.25 13.34 16 5 N -0.52 -20.92 18.54 19.00 0.35 -20.57 16 6 C 0.39 14.09 5.40 39.03 0.21 14.30 16 7 C -0.48 -18.35 5.32 23.08 0.12 -18.23 16 8 H 0.15 6.00 5.53 -2.91 -0.02 5.99 16 9 C 0.10 4.11 3.78 85.55 0.32 4.44 16 10 N -0.73 -30.56 13.90 21.98 0.31 -30.26 16 11 Si 0.85 32.16 25.60 68.60 1.76 33.92 16 12 H -0.23 -7.55 7.11 99.48 0.71 -6.84 16 13 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 14 H -0.21 -7.82 5.94 99.48 0.59 -7.23 16 15 N -1.04 -30.81 5.73 -50.80 -0.29 -31.10 16 16 S 2.72 76.96 5.34 -56.49 -0.30 76.66 16 17 O -0.95 -31.25 14.56 -128.00 -1.86 -33.11 16 18 O -0.96 -27.59 17.45 -128.00 -2.23 -29.82 16 19 C -0.62 -16.23 5.53 22.25 0.12 -16.11 16 20 C -0.05 -1.26 7.72 22.32 0.17 -1.09 16 21 C 0.09 2.44 7.30 22.37 0.16 2.60 16 22 F -0.13 -3.51 17.27 44.97 0.78 -2.74 16 23 C -0.13 -2.72 10.01 22.35 0.22 -2.49 16 24 C 0.10 2.23 7.30 22.37 0.16 2.40 16 25 F -0.12 -2.56 17.27 44.97 0.78 -1.78 16 26 C -0.06 -1.37 9.50 22.32 0.21 -1.16 16 27 H 0.31 12.14 8.29 -92.71 -0.77 11.37 16 28 H 0.43 11.26 7.71 -96.74 -0.75 10.52 16 29 H 0.17 4.89 6.27 -2.91 -0.02 4.88 16 30 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.18 3.16 7.76 -2.91 -0.02 3.14 16 Total: -1.00 -51.97 308.74 3.88 -48.09 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.41 Total: 13.93 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 3.84 Total: 1.54 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: 0.72 Total: -106.68 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -4.10 Total: -62.94 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 1.55 Total: -4.52 kcal Atomic # 14 Polarization: 32.16 SS G_CDS: 1.76 Total: 33.92 kcal Atomic # 16 Polarization: 76.96 SS G_CDS: -0.30 Total: 76.66 kcal Total: -51.97 3.88 -48.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259314138.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.866 kcal (2) G-P(sol) polarization free energy of solvation -51.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds