Wall clock time and date at job start Tue Mar 31 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00031 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 S 1.65596 * 119.99677 * 165.00247 * 11 10 9 13 13 O 1.42106 * 106.40283 * 178.54151 * 12 11 10 14 14 O 1.42105 * 106.40421 * 311.45913 * 12 11 10 15 15 C 1.76198 * 107.22309 * 65.00118 * 12 11 10 16 16 C 1.38257 * 119.93720 * 269.72901 * 15 12 11 17 17 C 1.38261 * 120.06463 * 179.72186 * 16 15 12 18 18 Cl 1.73602 * 120.03393 * 180.27264 * 17 16 15 19 19 C 1.38790 * 119.93561 * 0.52150 * 17 16 15 20 20 O 1.35947 * 120.06514 * 179.72507 * 19 17 16 21 21 C 1.38794 * 119.87336 * 359.75125 * 19 17 16 22 22 Cl 1.73595 * 120.03391 * 179.97438 * 21 19 17 23 23 C 1.38258 * 119.93777 * 89.99237 * 15 12 11 24 24 H 0.96991 * 119.99886 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 26 26 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 27 27 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 28 28 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 29 29 H 0.96996 * 120.00063 * 345.00668 * 11 10 9 30 30 H 1.08003 * 119.96388 * 359.97438 * 16 15 12 31 31 H 0.96696 * 114.00093 * 270.02776 * 20 19 17 32 32 H 1.08005 * 119.96382 * 0.02562 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4867 -2.6364 -0.0022 12 16 6.3149 -4.0215 0.3688 13 8 7.6957 -3.7081 0.2477 14 8 5.7349 -4.5283 1.5630 15 6 5.9588 -5.1966 -0.8949 16 6 4.8829 -6.0538 -0.7567 17 6 4.5976 -6.9730 -1.7493 18 17 3.2421 -8.0440 -1.5782 19 6 5.3990 -7.0421 -2.8803 20 8 5.1243 -7.9488 -3.8553 21 6 6.4819 -6.1843 -3.0138 22 17 7.4875 -6.2676 -4.4263 23 6 6.7592 -5.2635 -2.0203 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8746 -0.6800 -0.8911 27 1 3.6579 -3.1505 -0.8908 28 1 3.6586 -3.1502 0.8892 29 1 5.9714 -1.8251 -0.2202 30 1 4.2621 -6.0024 0.1257 31 1 5.5627 -8.8020 -3.7339 32 1 7.6019 -4.5959 -2.1234 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260880677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:41 Heat of formation + Delta-G solvation = -105.643647 kcal Electronic energy + Delta-G solvation = -22231.732118 eV Core-core repulsion = 18371.478431 eV Total energy + Delta-G solvation = -3860.253687 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.993 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44221 -37.44476 -37.33953 -37.14166 -36.68896 -35.90417 -35.67575 -32.75175 -31.27976 -30.58939 -29.78536 -24.66638 -23.81312 -23.64548 -21.01411 -19.72501 -19.26681 -18.32180 -17.34376 -17.19561 -16.81656 -16.21756 -15.69937 -15.64334 -14.91116 -14.46790 -14.27689 -14.15982 -14.09313 -13.50089 -13.01627 -12.76010 -12.69039 -12.30309 -12.17121 -12.06297 -11.90466 -11.76070 -11.72964 -11.64613 -11.39206 -11.13894 -11.10175 -10.54746 -10.13618 -9.93977 -9.50977 -9.38279 -9.29187 -9.16719 -8.63927 -6.14253 -4.14871 -0.04879 0.36326 0.41144 1.37171 1.77672 2.47690 3.07005 3.24434 3.30786 3.33131 3.34426 3.65695 4.20375 4.34763 4.36022 4.45897 4.60573 4.88040 5.08691 5.19428 5.26317 5.39665 5.48944 5.77519 5.95463 6.14387 6.41681 6.86648 7.04721 7.11421 7.19554 7.63882 8.38432 8.88389 9.46138 10.98546 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.003601 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.551261 B = 7773.929979 C = 8396.308906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.526 4.526 8 H 0.076 0.924 9 C -0.017 4.017 10 C 0.123 3.877 11 N -1.110 6.110 12 S 2.696 3.304 13 O -0.960 6.960 14 O -0.947 6.947 15 C -0.664 4.664 16 C 0.011 3.989 17 C -0.075 4.075 18 Cl -0.031 7.031 19 C 0.180 3.820 20 O -0.473 6.473 21 C -0.078 4.078 22 Cl -0.037 7.037 23 C 0.009 3.991 24 H 0.265 0.735 25 H 0.027 0.973 26 H 0.020 0.980 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.418 0.582 30 H 0.165 0.835 31 H 0.402 0.598 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.721 -15.869 -6.069 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.056 4.056 10 C -0.002 4.002 11 N -0.872 5.872 12 S 2.782 3.218 13 O -0.950 6.950 14 O -0.937 6.937 15 C -0.748 4.748 16 C -0.008 4.008 17 C -0.103 4.103 18 Cl -0.002 7.002 19 C 0.132 3.868 20 O -0.284 6.284 21 C -0.106 4.106 22 Cl -0.008 7.008 23 C -0.011 4.011 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.254 0.746 30 H 0.183 0.817 31 H 0.261 0.739 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 14.600 -15.773 -5.685 22.232 hybrid contribution 0.342 0.464 -0.900 1.069 sum 14.942 -15.309 -6.584 22.383 Atomic orbital electron populations 1.69893 1.06300 1.27126 1.50238 1.24981 0.94737 0.99157 0.94263 0.86791 0.80419 0.83590 0.78551 1.20228 1.21249 1.18898 1.20929 0.88637 0.94902 1.52019 0.90568 1.19759 0.97730 0.90789 0.97353 1.21550 0.74763 1.02492 1.01372 1.55527 1.17754 1.25936 1.88014 1.01992 0.72976 0.73035 0.73808 1.93587 1.31022 1.83622 1.86818 1.93617 1.78627 1.80026 1.41393 1.31361 1.05801 1.19438 1.18165 1.20970 0.93241 0.89156 0.97470 1.21270 0.94534 0.98802 0.95719 1.98415 1.41615 1.62787 1.97403 1.18022 0.90657 0.91557 0.86545 1.84851 1.72763 1.26089 1.44717 1.21236 0.95269 1.01637 0.92461 1.98401 1.66856 1.97690 1.37816 1.20845 0.96921 0.94233 0.89090 0.92513 0.95470 0.96178 0.92210 0.90394 0.74637 0.81741 0.73911 0.82105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.53 -14.02 9.66 -34.44 -0.33 -14.36 16 8 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.02 -0.37 4.18 -27.88 -0.12 -0.49 16 10 C 0.12 2.13 6.16 -4.04 -0.02 2.11 16 11 N -1.11 -15.58 6.00 -10.61 -0.06 -15.64 16 12 S 2.70 36.04 5.74 -107.50 -0.62 35.42 16 13 O -0.96 -13.93 17.28 -57.17 -0.99 -14.92 16 14 O -0.95 -15.09 16.74 -57.17 -0.96 -16.04 16 15 C -0.66 -7.84 5.95 -39.57 -0.24 -8.08 16 16 C 0.01 0.13 9.30 -39.57 -0.37 -0.23 16 17 C -0.07 -0.83 6.33 -39.37 -0.25 -1.08 16 18 Cl -0.03 -0.33 28.50 -51.86 -1.48 -1.81 16 19 C 0.18 1.86 6.69 -39.17 -0.26 1.60 16 20 O -0.47 -4.05 12.42 -19.57 -0.24 -4.30 16 21 C -0.08 -0.81 6.33 -39.37 -0.25 -1.06 16 22 Cl -0.04 -0.34 28.50 -51.86 -1.48 -1.82 16 23 C 0.01 0.10 9.30 -39.57 -0.37 -0.27 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 26 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.36 7.75 -51.93 -0.40 0.96 16 29 H 0.42 5.15 8.65 -34.47 -0.30 4.85 16 30 H 0.17 1.82 7.60 -52.48 -0.40 1.42 16 31 H 0.40 1.56 9.06 45.56 0.41 1.98 16 32 H 0.16 1.49 7.61 -52.48 -0.40 1.09 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -33.08 326.63 -8.96 -42.05 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -1.86 Total: 2.04 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.30 Total: -20.00 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.71 Total: -41.49 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -2.19 Total: -35.26 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 36.04 SS G_CDS: -0.62 Total: 35.42 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -2.96 Total: -3.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.08 -8.96 -42.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260880677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.598 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds