Wall clock time and date at job start Tue Mar 31 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00031 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 S 1.65596 * 119.99677 * 165.00247 * 11 10 9 13 13 O 1.42106 * 106.40283 * 178.54151 * 12 11 10 14 14 O 1.42105 * 106.40421 * 311.45913 * 12 11 10 15 15 C 1.76198 * 107.22309 * 65.00118 * 12 11 10 16 16 C 1.38257 * 119.93720 * 269.72901 * 15 12 11 17 17 C 1.38261 * 120.06463 * 179.72186 * 16 15 12 18 18 Cl 1.73602 * 120.03393 * 180.27264 * 17 16 15 19 19 C 1.38790 * 119.93561 * 0.52150 * 17 16 15 20 20 O 1.35947 * 120.06514 * 179.72507 * 19 17 16 21 21 C 1.38794 * 119.87336 * 359.75125 * 19 17 16 22 22 Cl 1.73595 * 120.03391 * 179.97438 * 21 19 17 23 23 C 1.38258 * 119.93777 * 89.99237 * 15 12 11 24 24 H 0.96991 * 119.99886 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 26 26 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 27 27 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 28 28 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 29 29 H 0.96996 * 120.00063 * 345.00668 * 11 10 9 30 30 H 1.08003 * 119.96388 * 359.97438 * 16 15 12 31 31 H 0.96696 * 114.00093 * 270.02776 * 20 19 17 32 32 H 1.08005 * 119.96382 * 0.02562 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4867 -2.6364 -0.0022 12 16 6.3149 -4.0215 0.3688 13 8 7.6957 -3.7081 0.2477 14 8 5.7349 -4.5283 1.5630 15 6 5.9588 -5.1966 -0.8949 16 6 4.8829 -6.0538 -0.7567 17 6 4.5976 -6.9730 -1.7493 18 17 3.2421 -8.0440 -1.5782 19 6 5.3990 -7.0421 -2.8803 20 8 5.1243 -7.9488 -3.8553 21 6 6.4819 -6.1843 -3.0138 22 17 7.4875 -6.2676 -4.4263 23 6 6.7592 -5.2635 -2.0203 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8746 -0.6800 -0.8911 27 1 3.6579 -3.1505 -0.8908 28 1 3.6586 -3.1502 0.8892 29 1 5.9714 -1.8251 -0.2202 30 1 4.2621 -6.0024 0.1257 31 1 5.5627 -8.8020 -3.7339 32 1 7.6019 -4.5959 -2.1234 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260880677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:41 Heat of formation + Delta-G solvation = -131.481402 kcal Electronic energy + Delta-G solvation = -22232.852527 eV Core-core repulsion = 18371.478431 eV Total energy + Delta-G solvation = -3861.374096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.993 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24916 -38.47262 -38.19994 -37.96324 -37.50139 -37.09681 -37.05035 -34.69500 -32.12138 -31.52344 -31.42264 -26.40460 -24.67285 -24.49762 -22.69438 -20.80594 -20.03940 -19.42778 -18.82246 -18.41181 -18.00953 -16.98821 -16.86095 -16.58583 -16.22782 -15.81594 -15.63181 -15.52093 -15.06798 -14.60644 -14.33621 -13.82326 -13.60222 -13.56070 -13.42831 -13.33913 -13.24593 -13.11162 -12.81383 -12.56069 -12.50601 -12.25358 -12.02666 -11.90664 -11.78568 -11.77026 -11.41805 -10.74870 -10.43999 -10.31555 -10.12285 -8.25375 -6.30479 -0.94447 -0.66679 -0.43490 0.55950 0.95692 1.41148 1.43744 1.54111 1.59479 2.01063 2.39960 2.55099 2.62790 3.10904 3.18581 3.52359 3.64035 3.78381 3.94656 4.15394 4.31792 4.39929 4.49900 4.54010 4.67974 4.89179 4.94044 5.39656 5.48558 5.65160 6.06869 6.29539 6.35683 6.78107 7.34218 8.90766 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.003601 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.551261 B = 7773.929979 C = 8396.308906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.241 1.241 7 C -0.532 4.532 8 H 0.041 0.959 9 C -0.019 4.019 10 C 0.132 3.868 11 N -1.106 6.106 12 S 2.718 3.282 13 O -0.968 6.968 14 O -0.975 6.975 15 C -0.667 4.667 16 C 0.002 3.998 17 C -0.085 4.085 18 Cl -0.031 7.031 19 C 0.192 3.808 20 O -0.477 6.477 21 C -0.083 4.083 22 Cl -0.025 7.025 23 C 0.010 3.990 24 H 0.266 0.734 25 H 0.031 0.969 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.428 0.572 30 H 0.165 0.835 31 H 0.423 0.577 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.870 -15.772 -7.051 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.164 1.164 7 C -0.571 4.571 8 H 0.059 0.941 9 C -0.058 4.058 10 C 0.007 3.993 11 N -0.868 5.868 12 S 2.807 3.193 13 O -0.959 6.959 14 O -0.965 6.965 15 C -0.754 4.754 16 C -0.018 4.018 17 C -0.113 4.113 18 Cl -0.002 7.002 19 C 0.144 3.856 20 O -0.292 6.292 21 C -0.112 4.112 22 Cl 0.004 6.996 23 C -0.010 4.010 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.265 0.735 30 H 0.182 0.818 31 H 0.286 0.714 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 16.794 -15.683 -6.652 23.922 hybrid contribution -0.339 0.258 -0.678 0.801 sum 16.455 -15.425 -7.329 23.716 Atomic orbital electron populations 1.70056 1.08365 1.28146 1.52440 1.25953 0.95526 1.03433 0.94114 0.85715 0.79754 0.78328 0.79195 1.19125 1.21619 1.16404 1.21323 0.91532 0.93556 1.50669 0.94079 1.19706 0.94328 0.93686 0.98077 1.21215 0.76522 0.99934 1.01657 1.55309 1.16219 1.27118 1.88200 1.01118 0.72278 0.72582 0.73371 1.93574 1.31325 1.83890 1.87062 1.93582 1.79040 1.80383 1.43486 1.30970 1.06666 1.19514 1.18246 1.21058 0.93400 0.89495 0.97836 1.21318 0.94936 0.99013 0.96066 1.98414 1.41628 1.62687 1.97431 1.18035 0.89940 0.91505 0.86129 1.84800 1.73191 1.27132 1.44054 1.21278 0.95512 1.01552 0.92833 1.98407 1.66475 1.97648 1.37100 1.21054 0.96967 0.94336 0.88620 0.92546 0.95045 0.94586 0.91371 0.91018 0.73505 0.81752 0.71375 0.80565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.71 13.96 21.45 0.30 -57.41 16 2 C 0.01 0.39 5.47 84.65 0.46 0.85 16 3 Si 0.95 41.81 27.47 68.60 1.88 43.70 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 7 C -0.53 -28.60 9.66 25.60 0.25 -28.36 16 8 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 9 C -0.02 -0.79 4.18 29.85 0.12 -0.66 16 10 C 0.13 4.45 6.16 86.38 0.53 4.99 16 11 N -1.11 -29.06 6.00 -187.47 -1.12 -30.19 16 12 S 2.72 69.02 5.74 -56.49 -0.32 68.70 16 13 O -0.97 -26.28 17.28 -128.00 -2.21 -28.49 16 14 O -0.97 -30.46 16.74 -128.00 -2.14 -32.61 16 15 C -0.67 -14.83 5.95 22.28 0.13 -14.70 16 16 C 0.00 0.05 9.30 22.28 0.21 0.25 16 17 C -0.08 -1.79 6.33 22.41 0.14 -1.65 16 18 Cl -0.03 -0.63 28.50 -2.72 -0.08 -0.71 16 19 C 0.19 3.61 6.69 22.54 0.15 3.76 16 20 O -0.48 -7.14 12.42 -92.95 -1.15 -8.29 16 21 C -0.08 -1.56 6.33 22.41 0.14 -1.42 16 22 Cl -0.03 -0.42 28.50 -2.72 -0.08 -0.50 16 23 C 0.01 0.20 9.30 22.28 0.21 0.40 16 24 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 25 H 0.03 1.28 7.20 -2.38 -0.02 1.27 16 26 H 0.04 1.39 7.57 -2.39 -0.02 1.38 16 27 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.07 2.50 7.75 -2.39 -0.02 2.48 16 29 H 0.43 9.48 8.65 -96.75 -0.84 8.64 16 30 H 0.16 3.62 7.60 -2.91 -0.02 3.60 16 31 H 0.42 2.27 9.06 -74.06 -0.67 1.60 16 32 H 0.18 2.81 7.61 -2.91 -0.02 2.79 16 Total: -1.00 -70.44 326.63 -2.93 -73.37 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -0.35 Total: 8.95 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 2.35 Total: -36.54 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -0.83 Total: -87.60 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -5.51 Total: -69.39 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.88 Total: 43.70 kcal Atomic # 16 Polarization: 69.02 SS G_CDS: -0.32 Total: 68.70 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.16 Total: -1.20 kcal Total: -70.44 -2.93 -73.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260880677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.107 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds