Wall clock time and date at job start Tue Mar 31 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.34916 * 116.99859 * 2 1 4 4 O 1.21649 * 119.99966 * 4.28501 * 3 2 1 5 5 C 1.46266 * 120.00005 * 184.28076 * 3 2 1 6 6 S 1.75828 * 125.45181 * 353.94859 * 5 3 2 7 7 C 1.70620 * 91.56932 * 180.22924 * 6 5 3 8 8 Cl 1.73605 * 124.52688 * 179.82860 * 7 6 5 9 9 C 1.34052 * 110.94096 * 359.82319 * 7 6 5 10 10 C 1.36801 * 125.45381 * 173.85946 * 5 3 2 11 11 S 1.76205 * 123.34436 * 359.97438 * 10 5 3 12 12 O 1.42101 * 106.39971 * 309.90762 * 11 10 5 13 13 O 1.42100 * 106.39838 * 176.98444 * 11 10 5 14 14 N 1.65596 * 107.21655 * 63.44548 * 11 10 5 15 15 C 1.46496 * 120.00278 * 65.99397 * 14 11 10 16 16 C 1.50698 * 109.47848 * 165.86880 * 15 14 11 17 17 H 1.08005 * 119.99584 * 4.75856 * 16 15 14 18 18 C 1.37873 * 120.00731 * 184.76698 * 16 15 14 19 19 N 1.31513 * 120.00245 * 174.22533 * 18 16 15 20 20 Si 1.86799 * 119.99689 * 354.22211 * 18 16 15 21 21 H 1.48505 * 109.47174 * 92.92626 * 20 18 16 22 22 H 1.48498 * 109.46999 * 212.92750 * 20 18 16 23 23 H 1.48500 * 109.47418 * 332.92764 * 20 18 16 24 24 H 1.09001 * 109.46825 * 303.36164 * 1 2 3 25 25 H 1.08996 * 109.47541 * 63.37105 * 1 2 3 26 26 H 1.09006 * 109.46363 * 183.37061 * 1 2 3 27 27 H 1.08004 * 122.45363 * 179.97438 * 9 7 6 28 28 H 0.97002 * 120.00092 * 246.26415 * 14 11 10 29 29 H 1.09005 * 109.47265 * 285.86667 * 15 14 11 30 30 H 1.09000 * 109.47265 * 45.86716 * 15 14 11 31 31 H 0.97000 * 120.00041 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0415 1.2021 0.0000 4 8 1.3816 2.2210 0.0787 5 6 3.4990 1.2803 -0.0946 6 16 4.5981 -0.0917 -0.0631 7 6 5.9550 0.9318 -0.2125 8 17 7.6010 0.3824 -0.2654 9 6 5.5802 2.2169 -0.2838 10 6 4.2252 2.4325 -0.2234 11 16 3.4950 4.0344 -0.2971 12 8 2.4715 3.9639 -1.2804 13 8 4.5692 4.9626 -0.3585 14 7 2.7350 4.2938 1.1511 15 6 3.5220 4.4054 2.3817 16 6 2.6605 4.9748 3.4792 17 1 1.6106 5.1564 3.3023 18 6 3.2124 5.2642 4.7091 19 7 2.4900 5.8654 5.6291 20 14 4.9863 4.8022 5.0687 21 1 5.8716 5.9506 4.7480 22 1 5.1259 4.4557 6.5059 23 1 5.3715 3.6332 4.2380 24 1 -0.3633 0.5652 0.8583 25 1 -0.3634 0.4606 -0.9186 26 1 -0.3632 -1.0260 0.0604 27 1 6.2917 3.0236 -0.3811 28 1 1.7684 4.3680 1.1852 29 1 3.8791 3.4183 2.6754 30 1 4.3737 5.0636 2.2100 31 1 2.8782 6.0686 6.4944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261051095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:29 Heat of formation + Delta-G solvation = -116.722790 kcal Electronic energy + Delta-G solvation = -23177.967767 eV Core-core repulsion = 19319.277359 eV Total energy + Delta-G solvation = -3858.690408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.988 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74537 -38.44822 -37.17433 -36.88427 -36.35817 -35.41240 -34.70437 -32.19038 -30.72714 -27.99977 -27.34624 -25.69306 -22.52538 -21.99714 -20.93341 -19.44257 -18.68412 -17.72855 -17.28503 -16.91497 -16.71531 -16.07365 -15.88089 -15.50356 -15.16536 -14.52516 -14.29565 -13.96768 -13.49978 -13.37407 -13.28856 -12.96064 -12.50350 -12.41347 -12.20636 -12.03759 -11.92654 -11.68585 -11.56418 -11.25234 -11.11661 -10.94742 -10.90733 -10.75457 -10.59823 -9.97673 -9.50807 -9.38112 -9.16075 -8.89357 -8.46645 -6.19208 -4.19347 -0.40818 0.46263 0.79006 1.24929 1.55167 1.75081 2.27363 2.42588 3.23203 3.30304 3.31900 3.56483 4.06020 4.31387 4.35491 4.62297 4.97319 5.00382 5.08642 5.13145 5.15988 5.38837 5.43852 5.61636 6.01861 6.22057 6.86651 6.90155 7.32913 7.44021 7.95116 8.38114 8.84217 9.39411 10.93212 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.005682 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.696257 B = 4926.675227 C = 6055.070550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.348 6.348 3 C 0.523 3.477 4 O -0.447 6.447 5 C -0.145 4.145 6 S 0.343 5.657 7 C -0.186 4.186 8 Cl 0.003 6.997 9 C -0.060 4.060 10 C -0.599 4.599 11 S 2.701 3.299 12 O -0.949 6.949 13 O -0.957 6.957 14 N -1.077 6.077 15 C 0.216 3.784 16 C -0.528 4.528 17 H 0.084 0.916 18 C 0.076 3.924 19 N -0.890 5.890 20 Si 0.869 3.131 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.263 1.263 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.174 0.826 28 H 0.422 0.578 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -16.546 -12.398 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.265 6.265 3 C 0.363 3.637 4 O -0.333 6.333 5 C -0.267 4.267 6 S 0.611 5.389 7 C -0.333 4.333 8 Cl 0.031 6.969 9 C -0.090 4.090 10 C -0.696 4.696 11 S 2.782 3.218 12 O -0.939 6.939 13 O -0.947 6.947 14 N -0.842 5.842 15 C 0.092 3.908 16 C -0.567 4.567 17 H 0.101 0.899 18 C -0.128 4.128 19 N -0.528 5.528 20 Si 0.695 3.305 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.188 1.188 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.192 0.808 28 H 0.259 0.741 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.932 -17.345 -12.759 21.889 hybrid contribution 1.060 0.629 0.664 1.400 sum 4.992 -16.716 -12.095 21.228 Atomic orbital electron populations 1.23068 0.75276 1.04157 1.03498 1.86091 1.24505 1.31234 1.84682 1.19463 0.86426 0.82799 0.75026 1.91022 1.65106 1.35033 1.42141 1.23372 0.94858 0.97814 1.10695 1.83126 0.89935 1.04523 1.61292 1.25266 0.93805 0.99353 1.14869 1.98393 1.12830 1.88750 1.96886 1.19657 0.93939 0.96559 0.98819 1.31212 1.02441 1.23677 1.12306 1.01974 0.73351 0.72823 0.73652 1.93580 1.56096 1.86278 1.57920 1.93575 1.56972 1.57551 1.86594 1.55145 1.19143 1.86764 1.23135 1.19459 0.92412 0.96243 0.82720 1.21016 0.97606 1.43156 0.94919 0.89851 1.24838 0.97830 0.94106 0.96019 1.69887 1.37095 1.40006 1.05801 0.86933 0.85514 0.79975 0.78108 1.19539 1.20745 1.18773 0.91013 0.91458 0.87598 0.80833 0.74069 0.96835 0.94875 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.51 101.05 1.06 1.37 16 2 O -0.35 -4.19 10.33 -41.08 -0.42 -4.62 16 3 C 0.52 7.92 7.84 33.96 0.27 8.19 16 4 O -0.45 -7.89 11.77 -26.88 -0.32 -8.20 16 5 C -0.15 -2.13 6.44 -36.88 -0.24 -2.37 16 6 S 0.34 3.73 22.92 -107.50 -2.46 1.27 16 7 C -0.19 -2.27 6.82 29.26 0.20 -2.07 16 8 Cl 0.00 0.03 29.27 -51.86 -1.52 -1.49 16 9 C -0.06 -0.85 9.63 -41.38 -0.40 -1.25 16 10 C -0.60 -9.67 5.92 -40.43 -0.24 -9.91 16 11 S 2.70 51.64 4.96 -107.50 -0.53 51.11 16 12 O -0.95 -19.20 15.96 -66.39 -1.06 -20.26 16 13 O -0.96 -19.87 16.86 -57.17 -0.96 -20.83 16 14 N -1.08 -22.50 5.07 -11.66 -0.06 -22.56 16 15 C 0.22 5.11 5.05 -5.20 -0.03 5.08 16 16 C -0.53 -14.51 9.82 -34.44 -0.34 -14.85 16 17 H 0.08 2.44 7.88 -52.48 -0.41 2.02 16 18 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 20 Si 0.87 20.70 27.47 -169.99 -4.67 16.03 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.26 -5.92 6.57 56.52 0.37 -5.55 16 24 H 0.07 0.70 8.00 -51.93 -0.42 0.29 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.17 2.29 7.78 -52.48 -0.41 1.88 16 28 H 0.42 8.62 7.85 -34.47 -0.27 8.35 16 29 H 0.01 0.31 7.29 -51.93 -0.38 -0.06 16 30 H 0.03 0.79 7.11 -51.93 -0.37 0.42 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -33.06 317.37 -8.53 -41.59 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -2.27 Total: 2.58 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 0.19 Total: -13.76 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.71 Total: -48.19 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -2.76 Total: -53.91 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 55.38 SS G_CDS: -3.00 Total: 52.38 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.52 Total: -1.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.06 -8.53 -41.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261051095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.136 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds