Wall clock time and date at job start Tue Mar 31 2020 22:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.34916 * 116.99859 * 2 1 4 4 O 1.21649 * 119.99966 * 4.28501 * 3 2 1 5 5 C 1.46266 * 120.00005 * 184.28076 * 3 2 1 6 6 S 1.75828 * 125.45181 * 353.94859 * 5 3 2 7 7 C 1.70620 * 91.56932 * 180.22924 * 6 5 3 8 8 Cl 1.73605 * 124.52688 * 179.82860 * 7 6 5 9 9 C 1.34052 * 110.94096 * 359.82319 * 7 6 5 10 10 C 1.36801 * 125.45381 * 173.85946 * 5 3 2 11 11 S 1.76205 * 123.34436 * 359.97438 * 10 5 3 12 12 O 1.42101 * 106.39971 * 309.90762 * 11 10 5 13 13 O 1.42100 * 106.39838 * 176.98444 * 11 10 5 14 14 N 1.65596 * 107.21655 * 63.44548 * 11 10 5 15 15 C 1.46496 * 120.00278 * 65.99397 * 14 11 10 16 16 C 1.50698 * 109.47848 * 165.86880 * 15 14 11 17 17 H 1.08005 * 119.99584 * 4.75856 * 16 15 14 18 18 C 1.37873 * 120.00731 * 184.76698 * 16 15 14 19 19 N 1.31513 * 120.00245 * 174.22533 * 18 16 15 20 20 Si 1.86799 * 119.99689 * 354.22211 * 18 16 15 21 21 H 1.48505 * 109.47174 * 92.92626 * 20 18 16 22 22 H 1.48498 * 109.46999 * 212.92750 * 20 18 16 23 23 H 1.48500 * 109.47418 * 332.92764 * 20 18 16 24 24 H 1.09001 * 109.46825 * 303.36164 * 1 2 3 25 25 H 1.08996 * 109.47541 * 63.37105 * 1 2 3 26 26 H 1.09006 * 109.46363 * 183.37061 * 1 2 3 27 27 H 1.08004 * 122.45363 * 179.97438 * 9 7 6 28 28 H 0.97002 * 120.00092 * 246.26415 * 14 11 10 29 29 H 1.09005 * 109.47265 * 285.86667 * 15 14 11 30 30 H 1.09000 * 109.47265 * 45.86716 * 15 14 11 31 31 H 0.97000 * 120.00041 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0415 1.2021 0.0000 4 8 1.3816 2.2210 0.0787 5 6 3.4990 1.2803 -0.0946 6 16 4.5981 -0.0917 -0.0631 7 6 5.9550 0.9318 -0.2125 8 17 7.6010 0.3824 -0.2654 9 6 5.5802 2.2169 -0.2838 10 6 4.2252 2.4325 -0.2234 11 16 3.4950 4.0344 -0.2971 12 8 2.4715 3.9639 -1.2804 13 8 4.5692 4.9626 -0.3585 14 7 2.7350 4.2938 1.1511 15 6 3.5220 4.4054 2.3817 16 6 2.6605 4.9748 3.4792 17 1 1.6106 5.1564 3.3023 18 6 3.2124 5.2642 4.7091 19 7 2.4900 5.8654 5.6291 20 14 4.9863 4.8022 5.0687 21 1 5.8716 5.9506 4.7480 22 1 5.1259 4.4557 6.5059 23 1 5.3715 3.6332 4.2380 24 1 -0.3633 0.5652 0.8583 25 1 -0.3634 0.4606 -0.9186 26 1 -0.3632 -1.0260 0.0604 27 1 6.2917 3.0236 -0.3811 28 1 1.7684 4.3680 1.1852 29 1 3.8791 3.4183 2.6754 30 1 4.3737 5.0636 2.2100 31 1 2.8782 6.0686 6.4944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261051095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:28 Heat of formation + Delta-G solvation = -141.125733 kcal Electronic energy + Delta-G solvation = -23179.025958 eV Core-core repulsion = 19319.277359 eV Total energy + Delta-G solvation = -3859.748599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.988 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81100 -39.47361 -38.42549 -37.99705 -37.53939 -36.97319 -36.51688 -34.24295 -31.76945 -29.33110 -28.87585 -26.73367 -24.02040 -23.50683 -22.15146 -20.46343 -20.24464 -19.29354 -18.61945 -18.01636 -17.88199 -17.69118 -17.19687 -16.85987 -16.48211 -16.01773 -15.49447 -15.21572 -14.91031 -14.79895 -14.46093 -14.39965 -14.32820 -13.74776 -13.41392 -13.24767 -13.13152 -13.07831 -12.96770 -12.75252 -12.46353 -12.31805 -12.11637 -11.93954 -11.87241 -11.85140 -11.63136 -10.90459 -10.37354 -10.26723 -10.13754 -8.33705 -6.39873 -1.50059 -0.74765 -0.37356 0.21401 0.46535 0.80483 1.23660 1.34971 1.37130 1.38867 1.48521 2.06252 2.32795 2.61374 3.00572 3.18080 3.58752 3.75752 4.09861 4.24217 4.29739 4.34877 4.40401 4.56862 4.71970 4.99689 5.02025 5.04872 5.41228 6.15106 6.25183 6.34897 6.65775 7.22963 8.82129 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.005682 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.696257 B = 4926.675227 C = 6055.070550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.339 6.339 3 C 0.518 3.482 4 O -0.484 6.484 5 C -0.176 4.176 6 S 0.456 5.544 7 C -0.192 4.192 8 Cl 0.024 6.976 9 C -0.074 4.074 10 C -0.616 4.616 11 S 2.716 3.284 12 O -0.967 6.967 13 O -0.981 6.981 14 N -1.087 6.087 15 C 0.224 3.776 16 C -0.539 4.539 17 H 0.047 0.953 18 C 0.018 3.982 19 N -0.937 5.937 20 Si 0.930 3.070 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.237 1.237 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.147 0.853 27 H 0.178 0.822 28 H 0.420 0.580 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -19.749 -12.884 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.255 6.255 3 C 0.360 3.640 4 O -0.372 6.372 5 C -0.299 4.299 6 S 0.724 5.276 7 C -0.339 4.339 8 Cl 0.053 6.947 9 C -0.103 4.103 10 C -0.719 4.719 11 S 2.802 3.198 12 O -0.957 6.957 13 O -0.971 6.971 14 N -0.849 5.849 15 C 0.099 3.901 16 C -0.578 4.578 17 H 0.066 0.934 18 C -0.181 4.181 19 N -0.576 5.576 20 Si 0.752 3.248 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.160 1.160 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.165 0.835 27 H 0.195 0.805 28 H 0.257 0.743 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.100 -20.529 -13.264 25.191 hybrid contribution 0.329 1.430 0.744 1.646 sum 6.429 -19.099 -12.520 23.724 Atomic orbital electron populations 1.23418 0.73731 1.06640 1.03123 1.86094 1.25953 1.29471 1.83964 1.19735 0.86844 0.83155 0.74260 1.91005 1.65971 1.36278 1.43942 1.23582 0.95432 0.99547 1.11325 1.82768 0.86787 1.00848 1.57185 1.25487 0.95568 0.99353 1.13500 1.98411 1.11309 1.88320 1.96674 1.19673 0.93130 0.97769 0.99758 1.30513 1.03488 1.22051 1.15861 1.01093 0.72663 0.73434 0.72615 1.93550 1.57045 1.87088 1.58018 1.93536 1.57217 1.59722 1.86637 1.55087 1.18972 1.87886 1.22918 1.19246 0.91806 0.96602 0.82485 1.21262 0.96733 1.43250 0.96572 0.93441 1.25767 1.02825 0.93847 0.95672 1.70027 1.39516 1.41564 1.06511 0.85951 0.79469 0.80744 0.78654 1.18932 1.19908 1.16027 0.92055 0.91394 0.83490 0.80488 0.74346 0.95152 0.94848 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.51 113.37 1.19 1.59 16 2 O -0.34 -7.51 10.33 -58.31 -0.60 -8.11 16 3 C 0.52 15.27 7.84 69.91 0.55 15.82 16 4 O -0.48 -17.36 11.77 26.52 0.31 -17.04 16 5 C -0.18 -4.85 6.44 24.02 0.15 -4.69 16 6 S 0.46 8.16 22.92 -56.49 -1.29 6.86 16 7 C -0.19 -4.02 6.82 66.87 0.46 -3.57 16 8 Cl 0.02 0.42 29.27 -2.72 -0.08 0.34 16 9 C -0.07 -1.96 9.63 21.10 0.20 -1.75 16 10 C -0.62 -19.21 5.92 21.72 0.13 -19.08 16 11 S 2.72 105.23 4.96 -56.49 -0.28 104.95 16 12 O -0.97 -40.14 15.96 -119.19 -1.90 -42.04 16 13 O -0.98 -41.13 16.86 -128.00 -2.16 -43.28 16 14 N -1.09 -46.58 5.07 -190.79 -0.97 -47.55 16 15 C 0.22 10.60 5.05 85.63 0.43 11.03 16 16 C -0.54 -30.45 9.82 25.60 0.25 -30.20 16 17 H 0.05 2.93 7.88 -2.91 -0.02 2.91 16 18 C 0.02 1.05 5.47 84.65 0.46 1.51 16 19 N -0.94 -56.95 13.96 21.45 0.30 -56.65 16 20 Si 0.93 41.85 27.47 68.60 1.88 43.74 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.24 -9.61 6.57 99.48 0.65 -8.95 16 24 H 0.06 1.17 8.00 -2.39 -0.02 1.15 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.15 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.18 4.40 7.78 -2.91 -0.02 4.38 16 28 H 0.42 18.13 7.85 -96.74 -0.76 17.37 16 29 H 0.03 1.34 7.29 -2.38 -0.02 1.33 16 30 H 0.03 1.58 7.11 -2.39 -0.02 1.56 16 31 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -73.15 317.37 -0.56 -73.71 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.40 Total: 14.44 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 3.83 Total: -29.34 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -0.67 Total: -104.20 kcal Atomic # 8 Polarization: -106.13 SS G_CDS: -4.35 Total: -110.48 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.74 kcal Atomic # 16 Polarization: 113.39 SS G_CDS: -1.58 Total: 111.81 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -0.08 Total: 0.34 kcal Total: -73.15 -0.56 -73.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261051095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.417 kcal (2) G-P(sol) polarization free energy of solvation -73.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds