Wall clock time and date at job start Tue Mar 31 2020 22:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99343 * 2 1 4 4 C 1.52998 * 109.47611 * 269.99610 * 3 2 1 5 5 N 1.46894 * 109.47456 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99945 * 170.00282 * 5 4 3 7 7 C 1.53244 * 109.33962 * 187.25655 * 6 5 4 8 8 N 1.47078 * 108.51991 * 306.16970 * 7 6 5 9 9 C 1.36942 * 120.88233 * 231.20926 * 8 7 6 10 10 H 1.07999 * 119.99577 * 26.56936 * 9 8 7 11 11 C 1.38813 * 119.99965 * 206.56592 * 9 8 7 12 12 N 1.31622 * 120.00064 * 17.01165 * 11 9 8 13 13 Si 1.86798 * 119.99908 * 197.00627 * 11 9 8 14 14 H 1.48500 * 109.47003 * 60.00127 * 13 11 9 15 15 H 1.48496 * 109.47028 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47220 * 300.00559 * 13 11 9 17 17 C 1.47079 * 118.23884 * 51.18447 * 8 7 6 18 18 C 1.46899 * 111.00243 * 294.30534 * 5 4 3 19 19 C 1.34767 * 120.00348 * 179.97438 * 2 1 3 20 20 O 1.21282 * 120.00196 * 180.02562 * 19 2 1 21 21 C 1.50698 * 120.00179 * 0.02562 * 19 2 1 22 22 H 1.09001 * 109.46123 * 319.99592 * 21 19 2 23 23 C 1.53034 * 109.46538 * 79.97358 * 21 19 2 24 24 C 1.53121 * 109.27995 * 179.20813 * 23 21 19 25 25 C 1.53120 * 109.15232 * 302.32997 * 24 23 21 26 26 C 1.53037 * 109.27589 * 57.66000 * 25 24 23 27 27 N 1.46846 * 109.52605 * 300.81916 * 26 25 24 28 28 C 1.46898 * 111.00354 * 185.84084 * 27 26 25 29 29 H 1.09003 * 109.47007 * 90.00230 * 1 2 3 30 30 H 1.08998 * 109.47150 * 209.99606 * 1 2 3 31 31 H 1.08993 * 109.47674 * 330.00090 * 1 2 3 32 32 H 1.09002 * 109.46619 * 149.99721 * 3 2 1 33 33 H 1.09001 * 109.47383 * 30.00433 * 3 2 1 34 34 H 1.08998 * 109.46552 * 60.00400 * 4 3 2 35 35 H 1.08998 * 109.46929 * 300.00763 * 4 3 2 36 36 H 1.09000 * 109.49449 * 307.21318 * 6 5 4 37 37 H 1.08990 * 109.49474 * 67.29540 * 6 5 4 38 38 H 1.08995 * 109.62923 * 65.87497 * 7 6 5 39 39 H 1.08997 * 109.62617 * 186.45767 * 7 6 5 40 40 H 0.96993 * 119.99619 * 180.02562 * 12 11 9 41 41 H 1.09002 * 109.62982 * 189.11029 * 17 8 7 42 42 H 1.08999 * 109.79217 * 68.62059 * 17 8 7 43 43 H 1.08999 * 109.48934 * 292.70928 * 18 5 4 44 44 H 1.09001 * 109.49149 * 52.78273 * 18 5 4 45 45 H 1.09002 * 109.50664 * 299.13779 * 23 21 19 46 46 H 1.09003 * 109.50098 * 59.25748 * 23 21 19 47 47 H 1.09008 * 109.52349 * 182.42983 * 24 23 21 48 48 H 1.09001 * 109.58080 * 62.26884 * 24 23 21 49 49 H 1.09001 * 109.50201 * 297.71776 * 25 24 23 50 50 H 1.09003 * 109.50350 * 177.60064 * 25 24 23 51 51 H 1.08997 * 109.45982 * 180.80264 * 26 25 24 52 52 H 1.08996 * 109.45502 * 60.83109 * 26 25 24 53 53 H 1.08999 * 109.46894 * 295.79279 * 28 27 26 54 54 H 1.09003 * 109.46837 * 55.78477 * 28 27 26 55 55 H 1.08995 * 109.47037 * 175.79140 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1973 1.2688 0.0000 4 6 2.4524 1.7106 -1.4424 5 7 3.1873 2.9825 -1.4424 6 6 3.6567 3.3193 -2.7930 7 6 4.5673 4.5498 -2.7217 8 7 3.8442 5.6265 -2.0281 9 6 3.7484 6.8768 -2.5784 10 1 3.8016 7.0006 -3.6499 11 6 3.5830 7.9849 -1.7589 12 7 3.8486 7.8979 -0.4727 13 14 2.9834 9.5997 -2.4816 14 1 1.6443 9.4019 -3.0921 15 1 2.8906 10.6193 -1.4059 16 1 3.9379 10.0615 -3.5211 17 6 3.2263 5.3246 -0.7280 18 6 2.3685 4.0636 -0.8778 19 6 2.1389 -1.1671 0.0005 20 8 3.3517 -1.1670 0.0010 21 6 1.3855 -2.4722 0.0005 22 1 0.5219 -2.3930 0.6608 23 6 0.9136 -2.7886 -1.4204 24 6 0.1659 -4.1249 -1.4191 25 6 1.0907 -5.2174 -0.8752 26 6 1.5577 -4.8307 0.5299 27 7 2.2674 -3.5462 0.4751 28 6 2.8500 -3.2105 1.7811 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.1497 1.1385 0.5139 33 1 1.6082 2.0284 0.5139 34 1 1.5000 1.8409 -1.9562 35 1 3.0415 0.9509 -1.9562 36 1 4.2140 2.4779 -3.2048 37 1 2.8009 3.5367 -3.4319 38 1 5.4740 4.3028 -2.1694 39 1 4.8260 4.8728 -3.7300 40 1 3.7326 8.6721 0.0999 41 1 2.5982 6.1599 -0.4183 42 1 4.0019 5.1532 0.0184 43 1 1.5305 4.2706 -1.5434 44 1 1.9914 3.7619 0.0994 45 1 0.2466 -1.9991 -1.7667 46 1 1.7758 -2.8545 -2.0840 47 1 -0.1346 -4.3752 -2.4365 48 1 -0.7185 -4.0480 -0.7865 49 1 1.9556 -5.3215 -1.5304 50 1 0.5505 -6.1631 -0.8318 51 1 2.2277 -5.5997 0.9144 52 1 0.6933 -4.7402 1.1877 53 1 2.0515 -3.0667 2.5090 54 1 3.4987 -4.0228 2.1092 55 1 3.4321 -2.2931 1.6943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267572939.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:34 Heat of formation + Delta-G solvation = -9.040457 kcal Electronic energy + Delta-G solvation = -30970.042908 eV Core-core repulsion = 27042.125950 eV Total energy + Delta-G solvation = -3927.916958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.62603 -39.87185 -38.99398 -37.06132 -35.98989 -34.40945 -33.52265 -32.37053 -31.67058 -30.48196 -28.11898 -27.95896 -27.11590 -25.41703 -24.55271 -24.20708 -23.85079 -22.67465 -20.95165 -20.85441 -19.99501 -18.77067 -18.24790 -17.56040 -17.02745 -16.67235 -16.41695 -16.06357 -15.94445 -15.83083 -15.37335 -15.33570 -15.20386 -15.16254 -14.85094 -14.69362 -14.52026 -14.02841 -13.96856 -13.90681 -13.64387 -13.36594 -13.26218 -13.02824 -12.93425 -12.88524 -12.67595 -12.59794 -12.47468 -12.33326 -12.16452 -12.03050 -11.84642 -11.81762 -11.62684 -11.57303 -11.39878 -11.32598 -10.59057 -10.58338 -9.75673 -9.28505 -9.27014 -8.69824 -7.88005 -5.33129 1.46881 1.48955 1.55096 1.56325 1.83180 2.50681 2.87868 3.05652 3.27181 3.43539 3.65758 3.79792 3.87167 3.91614 4.01520 4.07526 4.15948 4.23534 4.27346 4.30632 4.32846 4.43051 4.44297 4.50541 4.52299 4.55135 4.59651 4.66101 4.68076 4.76208 4.77559 4.81202 4.87118 4.88630 4.95172 4.96944 5.02229 5.05826 5.06628 5.16971 5.19131 5.25650 5.34518 5.44896 5.46450 5.60190 5.67526 5.92144 6.10808 6.14536 6.21982 6.36539 6.39490 7.12415 7.17456 7.82297 8.37481 9.18944 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.002087 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.484475 B =13413.125030 C =13495.918871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.612 5.612 3 C 0.127 3.873 4 C 0.058 3.942 5 N -0.544 5.544 6 C 0.059 3.941 7 C 0.145 3.855 8 N -0.614 5.614 9 C -0.266 4.266 10 H 0.067 0.933 11 C -0.052 4.052 12 N -0.936 5.936 13 Si 0.972 3.028 14 H -0.277 1.277 15 H -0.293 1.293 16 H -0.276 1.276 17 C 0.184 3.816 18 C 0.052 3.948 19 C 0.509 3.491 20 O -0.562 6.562 21 C 0.077 3.923 22 H 0.083 0.917 23 C -0.106 4.106 24 C -0.114 4.114 25 C -0.119 4.119 26 C 0.056 3.944 27 N -0.544 5.544 28 C 0.020 3.980 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.028 0.972 38 H 0.012 0.988 39 H 0.062 0.938 40 H 0.251 0.749 41 H 0.060 0.940 42 H -0.004 1.004 43 H 0.024 0.976 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.089 0.911 51 H 0.081 0.919 52 H 0.045 0.955 53 H 0.031 0.969 54 H 0.076 0.924 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 -27.432 1.851 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.346 5.346 3 C 0.003 3.997 4 C -0.071 4.071 5 N -0.270 5.270 6 C -0.070 4.070 7 C 0.019 3.981 8 N -0.338 5.338 9 C -0.396 4.396 10 H 0.085 0.915 11 C -0.248 4.248 12 N -0.582 5.582 13 Si 0.799 3.201 14 H -0.203 1.203 15 H -0.219 1.219 16 H -0.202 1.202 17 C 0.058 3.942 18 C -0.077 4.077 19 C 0.298 3.702 20 O -0.440 6.440 21 C -0.034 4.034 22 H 0.101 0.899 23 C -0.144 4.144 24 C -0.151 4.151 25 C -0.157 4.157 26 C -0.071 4.071 27 N -0.270 5.270 28 C -0.128 4.128 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.030 0.970 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.014 0.986 43 H 0.042 0.958 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.076 0.924 50 H 0.108 0.892 51 H 0.100 0.900 52 H 0.063 0.937 53 H 0.050 0.950 54 H 0.095 0.905 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.819 -27.404 1.927 30.315 hybrid contribution -0.880 1.536 -0.010 1.770 sum -13.699 -25.868 1.917 29.334 Atomic orbital electron populations 1.22196 0.76969 1.04872 1.03433 1.47964 1.08538 1.05048 1.73035 1.21302 0.97581 0.84647 0.96158 1.22259 0.96457 0.90920 0.97499 1.61789 1.39902 1.02651 1.22630 1.22411 0.98059 0.98038 0.88531 1.21107 0.93023 0.87963 0.96030 1.44413 1.60625 1.07621 1.21182 1.19502 1.44587 0.84091 0.91399 0.91481 1.25832 1.01640 1.00899 0.96381 1.70192 1.52051 1.30543 1.05381 0.85282 0.78641 0.79029 0.77121 1.20278 1.21891 1.20201 1.20637 0.93801 0.93595 0.86117 1.22641 0.94242 0.91853 0.98985 1.21065 0.87809 0.86004 0.75367 1.90690 1.15840 1.87538 1.49918 1.21674 0.93844 0.88033 0.99883 0.89939 1.21564 1.00348 0.99706 0.92755 1.21575 0.97991 0.92915 1.02656 1.21641 0.99524 0.99162 0.95340 1.22220 0.97034 0.89814 0.98031 1.61593 1.34909 1.02511 1.28019 1.22464 0.99187 1.02694 0.88468 0.91053 0.89013 0.89601 0.91774 0.88996 0.94209 0.92110 0.89839 0.95400 0.96997 0.91980 0.93992 0.92149 0.98627 0.95794 0.89583 0.89538 0.92823 0.90149 0.90308 0.92398 0.89236 0.90013 0.93659 0.95045 0.90483 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.60 127.77 1.23 2.00 16 2 N -0.61 -12.80 2.87 -846.79 -2.43 -15.24 16 3 C 0.13 3.31 5.38 86.38 0.46 3.78 16 4 C 0.06 1.68 5.28 86.30 0.46 2.13 16 5 N -0.54 -19.78 4.63 -895.27 -4.14 -23.93 16 6 C 0.06 2.18 5.62 86.38 0.49 2.66 16 7 C 0.14 6.46 6.69 86.35 0.58 7.04 16 8 N -0.61 -32.41 3.04 -698.13 -2.12 -34.53 16 9 C -0.27 -15.02 9.63 84.03 0.81 -14.21 16 10 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 11 C -0.05 -2.97 4.94 84.86 0.42 -2.55 16 12 N -0.94 -56.26 11.15 21.65 0.24 -56.02 16 13 Si 0.97 45.23 29.59 68.60 2.03 47.26 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 C 0.18 9.26 5.42 86.35 0.47 9.73 16 18 C 0.05 1.99 5.46 86.38 0.47 2.47 16 19 C 0.51 12.54 6.11 87.66 0.54 13.08 16 20 O -0.56 -19.35 14.10 -3.03 -0.04 -19.39 16 21 C 0.08 1.34 1.51 44.19 0.07 1.41 16 22 H 0.08 1.06 6.31 -2.39 -0.02 1.05 16 23 C -0.11 -1.50 5.28 30.65 0.16 -1.34 16 24 C -0.11 -1.04 6.00 30.67 0.18 -0.86 16 25 C -0.12 -1.24 6.09 30.65 0.19 -1.06 16 26 C 0.06 0.72 5.46 86.33 0.47 1.19 16 27 N -0.54 -10.60 4.51 -901.63 -4.06 -14.66 16 28 C 0.02 0.40 9.10 127.69 1.16 1.56 16 29 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 30 H 0.09 0.67 5.94 -2.39 -0.01 0.66 16 31 H 0.09 0.85 7.89 -2.39 -0.02 0.83 16 32 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16 33 H 0.09 2.15 6.15 -2.39 -0.01 2.13 16 34 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 35 H 0.06 1.91 7.97 -2.39 -0.02 1.89 16 36 H 0.08 2.72 7.99 -2.39 -0.02 2.70 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 2.63 7.95 -2.39 -0.02 2.61 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.06 3.34 6.12 -2.39 -0.01 3.33 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.09 2.85 6.16 -2.39 -0.01 2.83 16 45 H 0.09 0.97 6.95 -2.39 -0.02 0.95 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 48 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 52 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 54 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 55 H 0.06 1.57 5.62 -2.39 -0.01 1.56 16 Total: -1.00 -73.68 409.00 -1.55 -75.23 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.84 Total: 14.24 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 8.15 Total: 27.03 kcal Atomic # 7 Polarization: -131.85 SS G_CDS: -12.52 Total: -144.37 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.04 Total: -19.39 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.68 -1.55 -75.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267572939.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.188 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds