Wall clock time and date at job start Tue Mar 31 2020 22:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47844 * 111.00261 * 2 1 4 4 C 1.54911 * 104.79981 * 146.35868 * 3 2 1 5 5 C 1.55146 * 101.65015 * 322.93298 * 4 3 2 6 6 H 1.09004 * 110.85362 * 277.19770 * 5 4 3 7 7 C 1.52997 * 110.70444 * 154.03302 * 5 4 3 8 8 C 1.50700 * 109.46928 * 179.97438 * 7 5 4 9 9 O 1.21278 * 120.00309 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00082 * 179.97438 * 8 7 5 11 11 C 1.46494 * 120.00392 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47238 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47063 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.47286 * 180.02562 * 13 12 11 15 15 C 1.46895 * 111.00232 * 170.00102 * 14 13 12 16 16 C 1.53240 * 109.33989 * 187.25359 * 15 14 13 17 17 N 1.47083 * 108.51786 * 306.16823 * 16 15 14 18 18 C 1.36945 * 120.87675 * 231.18551 * 17 16 15 19 19 H 1.07998 * 120.00052 * 26.72775 * 18 17 16 20 20 C 1.38812 * 119.99840 * 206.72143 * 18 17 16 21 21 N 1.31619 * 119.99800 * 17.14331 * 20 18 17 22 22 Si 1.86800 * 120.00095 * 197.14407 * 20 18 17 23 23 H 1.48505 * 109.46997 * 90.00081 * 22 20 18 24 24 H 1.48498 * 109.46845 * 209.99950 * 22 20 18 25 25 H 1.48498 * 109.47037 * 330.00034 * 22 20 18 26 26 C 1.47073 * 118.23926 * 51.46492 * 17 16 15 27 27 C 1.46902 * 110.99701 * 294.29988 * 14 13 12 28 28 C 1.47448 * 110.99607 * 120.83830 * 2 1 3 29 29 H 1.09003 * 109.47555 * 299.16116 * 1 2 3 30 30 H 1.08996 * 109.46685 * 59.15685 * 1 2 3 31 31 H 1.08997 * 109.47416 * 179.15418 * 1 2 3 32 32 H 1.08994 * 110.37791 * 265.19170 * 3 2 1 33 33 H 1.09005 * 110.37543 * 27.42284 * 3 2 1 34 34 H 1.08991 * 110.99311 * 204.83918 * 4 3 2 35 35 H 1.08996 * 110.98597 * 81.01812 * 4 3 2 36 36 H 1.09001 * 109.46811 * 59.94507 * 7 5 4 37 37 H 1.08992 * 109.47454 * 299.94762 * 7 5 4 38 38 H 0.97005 * 119.99668 * 0.02562 * 10 8 7 39 39 H 1.08996 * 109.46941 * 59.99917 * 11 10 8 40 40 H 1.09007 * 109.47019 * 300.00062 * 11 10 8 41 41 H 1.09001 * 109.46797 * 60.00621 * 12 11 10 42 42 H 1.08993 * 109.47008 * 300.00027 * 12 11 10 43 43 H 1.08996 * 109.47052 * 59.99909 * 13 12 11 44 44 H 1.09007 * 109.47084 * 299.99946 * 13 12 11 45 45 H 1.09000 * 109.49607 * 67.29359 * 15 14 13 46 46 H 1.09005 * 109.49350 * 307.20879 * 15 14 13 47 47 H 1.09001 * 109.62843 * 186.45763 * 16 15 14 48 48 H 1.08992 * 109.79093 * 65.97141 * 16 15 14 49 49 H 0.97006 * 120.00107 * 179.97438 * 21 20 18 50 50 H 1.08994 * 109.63101 * 68.24328 * 26 17 16 51 51 H 1.09001 * 109.62618 * 188.82829 * 26 17 16 52 52 H 1.08997 * 109.49610 * 292.70772 * 27 14 13 53 53 H 1.09006 * 109.49110 * 52.76081 * 27 14 13 54 54 H 1.09007 * 109.88453 * 117.33465 * 28 2 1 55 55 H 1.08998 * 110.02175 * 356.22805 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 0.8297 5 6 2.9157 0.2822 1.9316 6 1 2.3751 0.7725 2.7412 7 6 4.1568 -0.4338 2.4682 8 6 3.7479 -1.4163 3.5352 9 8 2.5790 -1.5321 3.8371 10 7 4.6811 -2.1664 4.1541 11 6 4.2836 -3.1219 5.1909 12 6 5.5247 -3.8378 5.7276 13 6 5.1094 -4.8362 6.8101 14 7 6.3010 -5.5232 7.3258 15 6 5.9776 -6.3118 8.5222 16 6 7.2711 -6.8628 9.1318 17 7 8.0066 -7.5911 8.0869 18 6 8.4535 -8.8676 8.3020 19 1 7.9434 -9.5067 9.0075 20 6 9.5622 -9.3401 7.6132 21 7 10.3798 -8.4943 7.0228 22 14 9.8938 -11.1763 7.5242 23 1 9.2193 -11.7437 6.3290 24 1 11.3568 -11.4108 7.4250 25 1 9.3689 -11.8339 8.7477 26 6 8.2549 -6.9100 6.8073 27 6 6.9175 -6.3593 6.2871 28 6 1.9973 -0.7057 1.1820 29 1 -0.3634 0.5007 0.8974 30 1 -0.3632 0.5269 -0.8823 31 1 -0.3634 -1.0275 -0.0152 32 1 2.2149 1.7038 -1.0181 33 1 1.2881 2.0596 0.4706 34 1 3.5495 2.2720 1.2640 35 1 4.1302 0.9281 0.2245 36 1 4.8439 0.2985 2.8920 37 1 4.6496 -0.9659 1.6546 38 1 5.6161 -2.0736 3.9128 39 1 3.5966 -3.8539 4.7663 40 1 3.7907 -2.5904 6.0050 41 1 6.2113 -3.1055 6.1524 42 1 6.0180 -4.3691 4.9138 43 1 4.4229 -5.5684 6.3849 44 1 4.6158 -4.3051 7.6241 45 1 5.3240 -7.1394 8.2466 46 1 5.4737 -5.6769 9.2511 47 1 7.0302 -7.5409 9.9504 48 1 7.8825 -6.0412 9.5048 49 1 11.1548 -8.8244 6.5417 50 1 8.9576 -6.0907 6.9588 51 1 8.6647 -7.6194 6.0883 52 1 6.2508 -7.1862 6.0426 53 1 7.0948 -5.7589 5.3947 54 1 2.5696 -1.5785 0.8676 55 1 1.1770 -1.0141 1.8300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316961347.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:46 Heat of formation + Delta-G solvation = -32.962304 kcal Electronic energy + Delta-G solvation = -29169.611547 eV Core-core repulsion = 25240.657260 eV Total energy + Delta-G solvation = -3928.954287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.05564 -39.84208 -39.50141 -37.03742 -35.78951 -34.32828 -33.63028 -32.04350 -31.60488 -30.80371 -28.81313 -27.99805 -26.33036 -25.42240 -24.43466 -23.96146 -22.20821 -22.02199 -21.74226 -20.84190 -20.73291 -18.73609 -17.97531 -17.40642 -17.16632 -16.88220 -16.67856 -16.27622 -16.02974 -15.91469 -15.49044 -15.32104 -15.22294 -15.00885 -14.97347 -14.62432 -14.48658 -14.23173 -13.97408 -13.66408 -13.37191 -13.32250 -12.95597 -12.82259 -12.71857 -12.63420 -12.54165 -12.52776 -12.31817 -12.26300 -12.11412 -12.06223 -11.95759 -11.77631 -11.73841 -11.59739 -11.48968 -11.30756 -10.79868 -10.58875 -10.06631 -9.32062 -9.26742 -8.68247 -7.88072 -5.32510 1.46278 1.47466 1.56448 1.69050 2.21105 2.50336 3.01656 3.08435 3.27113 3.55835 3.68865 3.69456 3.86644 3.95550 3.98825 4.09358 4.18912 4.34136 4.35950 4.38528 4.39545 4.45152 4.47723 4.53483 4.55205 4.62292 4.64508 4.66475 4.68494 4.71266 4.79915 4.83575 4.86130 4.89827 4.93346 4.98727 5.03387 5.11391 5.15222 5.16382 5.21833 5.27473 5.36915 5.38554 5.48837 5.60928 5.69267 5.98051 6.08413 6.18826 6.28731 6.37595 6.59873 7.13373 7.29985 7.84032 8.37894 9.18509 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.001559 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.045752 B =17957.490023 C =18359.103260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.551 5.551 3 C 0.035 3.965 4 C -0.117 4.117 5 C -0.091 4.091 6 H 0.066 0.934 7 C -0.123 4.123 8 C 0.505 3.495 9 O -0.585 6.585 10 N -0.722 5.722 11 C 0.129 3.871 12 C -0.114 4.114 13 C 0.059 3.941 14 N -0.540 5.540 15 C 0.055 3.945 16 C 0.143 3.857 17 N -0.615 5.615 18 C -0.266 4.266 19 H 0.066 0.934 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.270 1.270 26 C 0.185 3.815 27 C 0.050 3.950 28 C 0.053 3.947 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.416 0.584 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.028 0.972 44 H 0.086 0.914 45 H 0.021 0.979 46 H 0.095 0.905 47 H 0.058 0.942 48 H 0.017 0.983 49 H 0.251 0.749 50 H 0.001 0.999 51 H 0.056 0.944 52 H 0.014 0.986 53 H 0.087 0.913 54 H 0.065 0.935 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 21.855 -12.582 29.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.276 5.276 3 C -0.092 4.092 4 C -0.155 4.155 5 C -0.111 4.111 6 H 0.085 0.915 7 C -0.163 4.163 8 C 0.294 3.706 9 O -0.465 6.465 10 N -0.374 5.374 11 C 0.005 3.995 12 C -0.152 4.152 13 C -0.069 4.069 14 N -0.265 5.265 15 C -0.074 4.074 16 C 0.017 3.983 17 N -0.339 5.339 18 C -0.396 4.396 19 H 0.084 0.916 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.194 1.194 26 C 0.059 3.941 27 C -0.080 4.080 28 C -0.075 4.075 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.253 0.747 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.104 0.896 45 H 0.039 0.961 46 H 0.113 0.887 47 H 0.077 0.923 48 H 0.035 0.965 49 H 0.060 0.940 50 H 0.019 0.981 51 H 0.074 0.926 52 H 0.032 0.968 53 H 0.105 0.895 54 H 0.083 0.917 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.383 21.803 -12.733 29.565 hybrid contribution -0.116 -1.506 0.552 1.609 sum -15.499 20.296 -12.180 28.293 Atomic orbital electron populations 1.22540 0.87420 1.02052 1.00850 1.63613 1.08515 1.15424 1.40003 1.23160 0.96086 0.88654 1.01298 1.22790 0.97576 0.99404 0.95708 1.22082 0.95337 0.96082 0.97550 0.91502 1.21721 0.99334 0.97867 0.97355 1.21322 0.85242 0.81408 0.82666 1.90688 1.20029 1.69310 1.66473 1.46001 1.11458 1.40436 1.39540 1.21121 0.96728 0.91278 0.90406 1.21638 0.97000 0.98343 0.98223 1.22026 0.90798 0.96018 0.98063 1.61905 1.27703 1.30607 1.06272 1.22459 0.96764 0.95465 0.92756 1.21136 0.91822 0.94247 0.91076 1.44435 1.64881 1.13166 1.11467 1.19545 1.07255 0.89201 1.23582 0.91624 1.25770 0.95181 1.01827 1.01772 1.70181 1.14265 1.34127 1.39460 0.85261 0.76457 0.80542 0.78147 1.21264 1.21995 1.19435 1.20738 0.92062 0.93755 0.87588 1.22708 0.96407 0.94355 0.94483 1.22777 0.98011 0.97107 0.89573 0.95824 0.90210 0.91859 0.89262 0.93501 0.88892 0.89274 0.85815 0.86601 0.74736 0.92826 0.91952 0.89921 0.91161 0.95375 0.89561 0.96091 0.88714 0.92318 0.96454 0.94017 0.98076 0.92590 0.96796 0.89531 0.91677 0.94217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.12 127.69 1.16 1.46 16 2 N -0.55 -9.23 5.44 -911.69 -4.96 -14.19 16 3 C 0.04 0.42 6.73 86.77 0.58 1.01 16 4 C -0.12 -1.08 6.52 31.98 0.21 -0.87 16 5 C -0.09 -1.25 2.55 -9.61 -0.02 -1.27 16 6 H 0.07 1.15 8.04 -2.39 -0.02 1.13 16 7 C -0.12 -1.30 5.09 29.85 0.15 -1.15 16 8 C 0.51 9.23 7.62 87.66 0.67 9.90 16 9 O -0.58 -15.85 14.85 -3.02 -0.04 -15.90 16 10 N -0.72 -11.16 5.56 -463.07 -2.57 -13.73 16 11 C 0.13 2.42 5.67 86.38 0.49 2.91 16 12 C -0.11 -2.23 5.26 30.59 0.16 -2.07 16 13 C 0.06 1.44 4.96 86.30 0.43 1.87 16 14 N -0.54 -17.65 4.63 -894.28 -4.14 -21.79 16 15 C 0.05 1.86 5.62 86.38 0.49 2.34 16 16 C 0.14 6.03 6.69 86.35 0.58 6.60 16 17 N -0.62 -31.57 3.03 -697.24 -2.11 -33.68 16 18 C -0.27 -14.84 9.63 84.03 0.81 -14.03 16 19 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 20 C -0.05 -2.81 4.93 84.86 0.42 -2.40 16 21 N -0.93 -55.33 11.15 21.65 0.24 -55.09 16 22 Si 0.97 45.02 29.59 68.60 2.03 47.05 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.18 9.00 5.45 86.51 0.47 9.47 16 27 C 0.05 1.86 5.48 86.54 0.47 2.33 16 28 C 0.05 0.98 5.49 86.64 0.48 1.45 16 29 H 0.02 0.36 8.10 -2.39 -0.02 0.34 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.55 7.78 -2.38 -0.02 0.53 16 34 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 0.68 8.05 -2.39 -0.02 0.66 16 36 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.12 0.86 8.06 -2.39 -0.02 0.84 16 38 H 0.42 4.14 8.47 -92.70 -0.79 3.35 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.42 6.40 -2.39 -0.02 1.41 16 43 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 44 H 0.09 1.85 7.97 -2.38 -0.02 1.83 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.09 2.60 7.99 -2.38 -0.02 2.58 16 47 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 50 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 51 H 0.06 3.07 6.11 -2.39 -0.01 3.05 16 52 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 53 H 0.09 2.78 6.16 -2.38 -0.01 2.77 16 54 H 0.06 1.27 7.77 -2.38 -0.02 1.25 16 55 H 0.04 0.92 7.11 -2.39 -0.02 0.90 16 Total: -1.00 -71.68 420.37 -3.96 -75.64 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.06 Total: 14.12 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 7.54 Total: 17.58 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -13.55 Total: -138.49 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.04 Total: -15.90 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -71.68 -3.96 -75.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316961347.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.679 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds