Wall clock time and date at job start Tue Mar 31 2020 22:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.45804 * 2 1 4 4 C 1.53042 * 109.46330 * 119.97562 * 2 1 3 5 5 C 1.53121 * 109.27971 * 179.21087 * 4 2 1 6 6 H 1.09000 * 109.53197 * 62.23359 * 5 4 2 7 7 C 1.50701 * 109.57292 * 182.39993 * 5 4 2 8 8 O 1.21279 * 120.00107 * 359.70110 * 7 5 4 9 9 N 1.34767 * 119.99511 * 179.70487 * 7 5 4 10 10 C 1.46505 * 119.99636 * 180.02562 * 9 7 5 11 11 C 1.53008 * 109.47154 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47293 * 179.97438 * 11 10 9 13 13 C 1.46907 * 110.99643 * 294.30456 * 12 11 10 14 14 C 1.53242 * 109.33543 * 172.74807 * 13 12 11 15 15 N 1.47077 * 108.52129 * 53.82559 * 14 13 12 16 16 C 1.36939 * 120.87648 * 128.79424 * 15 14 13 17 17 H 1.08003 * 119.99653 * 206.59170 * 16 15 14 18 18 C 1.38813 * 120.00237 * 26.59562 * 16 15 14 19 19 N 1.31622 * 119.99927 * 17.01067 * 18 16 15 20 20 Si 1.86797 * 119.99998 * 197.00926 * 18 16 15 21 21 H 1.48496 * 109.47373 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46997 * 119.99999 * 20 18 16 23 23 H 1.48501 * 109.47242 * 239.99874 * 20 18 16 24 24 C 1.47079 * 118.24123 * 308.81420 * 15 14 13 25 25 C 1.46893 * 111.00064 * 170.00099 * 12 11 10 26 26 C 1.53119 * 109.14769 * 302.33274 * 5 4 2 27 27 C 1.53032 * 109.28303 * 57.66135 * 26 5 4 28 28 N 1.46839 * 109.46579 * 240.02351 * 2 1 3 29 29 C 1.46894 * 111.00406 * 54.14189 * 28 2 1 30 30 H 1.09006 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47276 * 60.00440 * 1 2 3 32 32 H 1.08998 * 109.47237 * 299.99859 * 1 2 3 33 33 H 1.09004 * 109.49997 * 299.14454 * 4 2 1 34 34 H 1.08996 * 109.49829 * 59.25571 * 4 2 1 35 35 H 0.96999 * 120.00728 * 359.97438 * 9 7 5 36 36 H 1.08997 * 109.46825 * 299.99435 * 10 9 7 37 37 H 1.08994 * 109.47480 * 60.00046 * 10 9 7 38 38 H 1.09000 * 109.46788 * 300.00338 * 11 10 9 39 39 H 1.09003 * 109.46517 * 59.99783 * 11 10 9 40 40 H 1.08994 * 109.49057 * 292.70304 * 13 12 11 41 41 H 1.09000 * 109.49488 * 52.78584 * 13 12 11 42 42 H 1.09000 * 109.62211 * 294.11603 * 14 13 12 43 43 H 1.08997 * 109.62450 * 173.53812 * 14 13 12 44 44 H 0.96996 * 119.99948 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.62729 * 291.47410 * 24 15 14 46 46 H 1.09001 * 109.62649 * 170.89542 * 24 15 14 47 47 H 1.08998 * 109.49361 * 307.21346 * 25 12 11 48 48 H 1.09005 * 109.49394 * 67.29261 * 25 12 11 49 49 H 1.08997 * 109.50245 * 297.71417 * 26 5 4 50 50 H 1.09005 * 109.50015 * 177.60499 * 26 5 4 51 51 H 1.09002 * 109.46405 * 180.80537 * 27 26 5 52 52 H 1.08999 * 109.46214 * 60.83231 * 27 26 5 53 53 H 1.08999 * 109.47003 * 60.00051 * 29 28 2 54 54 H 1.08997 * 109.47325 * 180.02562 * 29 28 2 55 55 H 1.09007 * 109.47037 * 300.00163 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7358 1.2358 6 1 3.9456 0.2873 1.2673 7 6 4.0796 -1.4955 2.4338 8 8 3.2958 -1.9741 3.2259 9 7 5.4055 -1.6430 2.6248 10 6 5.9000 -2.3821 3.7891 11 6 7.4298 -2.4022 3.7685 12 7 7.9257 -3.1427 4.9362 13 6 7.5950 -2.4410 6.1838 14 6 7.9654 -3.3272 7.3779 15 7 9.3744 -3.7269 7.2437 16 6 10.2546 -3.5574 8.2790 17 1 11.3085 -3.4354 8.0772 18 6 9.7922 -3.5425 9.5878 19 7 8.5962 -4.0148 9.8686 20 14 10.8674 -2.8523 10.9504 21 1 12.1564 -2.3886 10.3771 22 1 10.1736 -1.7100 11.5978 23 1 11.1273 -3.9100 11.9598 24 6 9.8132 -4.3130 5.9681 25 6 9.3700 -3.3880 4.8296 26 6 4.0548 -1.4186 -0.0465 27 6 3.4866 -0.6776 -1.2589 28 7 2.0193 -0.6917 -1.1993 29 6 1.4374 -0.1108 -2.4165 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.6894 -0.1983 2.1399 34 1 1.6659 -1.7447 1.2575 35 1 6.0324 -1.2606 1.9911 36 1 5.5550 -1.8957 4.7015 37 1 5.5232 -3.4043 3.7575 38 1 7.7744 -2.8887 2.8560 39 1 7.8070 -1.3799 3.7999 40 1 8.1556 -1.5077 6.2357 41 1 6.5267 -2.2259 6.2079 42 1 7.3322 -4.2144 7.3856 43 1 7.8296 -2.7688 8.3041 44 1 8.2729 -4.0041 10.7831 45 1 9.3577 -5.2950 5.8405 46 1 10.8991 -4.4064 5.9624 47 1 9.5891 -3.8597 3.8716 48 1 9.9060 -2.4415 4.9004 49 1 3.7126 -2.4534 -0.0591 50 1 5.1440 -1.3945 -0.0829 51 1 3.8176 -1.1699 -2.1734 52 1 3.8403 0.3533 -1.2531 53 1 1.7120 0.9419 -2.4837 54 1 1.8162 -0.6420 -3.2896 55 1 0.3517 -0.2014 -2.3792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316966485.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:03 Heat of formation + Delta-G solvation = -30.225667 kcal Electronic energy + Delta-G solvation = -29917.916646 eV Core-core repulsion = 25989.081028 eV Total energy + Delta-G solvation = -3928.835618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.35549 -39.92172 -39.43197 -36.86337 -35.47392 -34.72265 -33.37275 -33.20791 -31.66162 -30.39798 -28.62918 -27.83533 -27.05506 -25.11825 -24.37317 -24.05746 -23.14751 -22.55864 -21.26608 -20.82938 -20.59558 -18.74750 -18.03885 -17.42104 -16.87935 -16.77556 -16.56936 -16.28131 -16.04820 -15.76975 -15.46286 -15.40628 -15.28399 -15.14614 -15.00041 -14.86730 -14.44082 -14.31103 -13.83837 -13.58921 -13.22104 -13.11788 -13.01956 -12.99361 -12.84664 -12.76614 -12.65578 -12.60802 -12.51376 -12.21509 -12.14946 -12.03983 -11.86833 -11.86544 -11.60794 -11.56293 -11.42448 -11.35505 -10.74663 -10.60909 -10.10821 -9.30683 -9.21942 -8.69761 -7.88516 -5.33511 1.45258 1.46536 1.57532 1.61841 2.05639 2.49966 2.96828 3.08029 3.27219 3.58621 3.66846 3.71035 3.82695 3.86552 4.04961 4.08627 4.18458 4.29248 4.30843 4.34185 4.41081 4.45700 4.51236 4.54035 4.58163 4.60558 4.65000 4.69395 4.70738 4.81657 4.82416 4.88878 4.91263 4.92577 4.96099 4.99968 5.03893 5.08558 5.12222 5.19500 5.19897 5.26822 5.35773 5.38055 5.44350 5.60523 5.66347 6.13259 6.18460 6.19937 6.22876 6.36265 6.54905 7.11815 7.25718 7.82970 8.37237 9.18590 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.001768 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.404855 B =15831.792256 C =16439.059892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.086 3.914 3 H 0.048 0.952 4 C -0.090 4.090 5 C -0.099 4.099 6 H 0.117 0.883 7 C 0.514 3.486 8 O -0.587 6.587 9 N -0.712 5.712 10 C 0.129 3.871 11 C 0.056 3.944 12 N -0.544 5.544 13 C 0.051 3.949 14 C 0.184 3.816 15 N -0.614 5.614 16 C -0.262 4.262 17 H 0.071 0.929 18 C -0.055 4.055 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.291 1.291 23 H -0.293 1.293 24 C 0.141 3.859 25 C 0.058 3.942 26 C -0.103 4.103 27 C 0.058 3.942 28 N -0.557 5.557 29 C 0.022 3.978 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.417 0.583 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.024 0.976 41 H 0.073 0.927 42 H -0.005 1.005 43 H 0.055 0.945 44 H 0.250 0.750 45 H 0.015 0.985 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.029 0.971 49 H 0.060 0.940 50 H 0.097 0.903 51 H 0.090 0.910 52 H 0.046 0.954 53 H 0.030 0.970 54 H 0.074 0.926 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 11.957 -28.870 32.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 H 0.066 0.934 4 C -0.128 4.128 5 C -0.120 4.120 6 H 0.134 0.866 7 C 0.301 3.699 8 O -0.467 6.467 9 N -0.365 5.365 10 C 0.004 3.996 11 C -0.072 4.072 12 N -0.269 5.269 13 C -0.079 4.079 14 C 0.058 3.942 15 N -0.338 5.338 16 C -0.392 4.392 17 H 0.088 0.912 18 C -0.250 4.250 19 N -0.584 5.584 20 Si 0.798 3.202 21 H -0.188 1.188 22 H -0.218 1.218 23 H -0.220 1.220 24 C 0.015 3.985 25 C -0.070 4.070 26 C -0.141 4.141 27 C -0.069 4.069 28 N -0.283 5.283 29 C -0.125 4.125 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.254 0.746 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.092 0.908 42 H 0.013 0.987 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.033 0.967 46 H 0.082 0.918 47 H 0.120 0.880 48 H 0.047 0.953 49 H 0.078 0.922 50 H 0.116 0.884 51 H 0.109 0.891 52 H 0.065 0.935 53 H 0.048 0.952 54 H 0.093 0.907 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.318 10.656 -28.123 32.133 hybrid contribution 1.086 1.570 1.259 2.287 sum -10.232 12.226 -26.864 31.238 Atomic orbital electron populations 1.21900 0.93657 1.02352 1.02526 1.21584 0.96041 0.95159 0.89437 0.93387 1.21398 0.93034 1.01251 0.97127 1.21407 0.97398 1.00799 0.92417 0.86555 1.21206 0.81976 0.79620 0.87086 1.90714 1.56900 1.50808 1.48282 1.45781 1.07129 1.56228 1.27370 1.21099 0.94133 0.96248 0.88092 1.22187 0.92986 0.97543 0.94531 1.61747 1.15568 1.47927 1.01682 1.22599 0.99518 0.95072 0.90685 1.20602 0.84059 0.94584 0.94943 1.44417 1.06799 1.71090 1.11532 1.19598 0.90973 1.42714 0.85911 0.91150 1.25840 0.98597 1.00909 0.99647 1.70210 1.20604 1.48911 1.18693 0.85174 0.78620 0.77406 0.79045 1.18836 1.21764 1.21963 1.21180 0.97731 0.94219 0.85349 1.22469 0.86350 0.98631 0.99594 1.21595 1.01495 0.99523 0.91461 1.22113 0.86675 0.99505 0.98644 1.61934 1.07933 1.55790 1.02630 1.22442 1.00939 0.97448 0.91712 0.92697 0.91119 0.91791 0.91877 0.92658 0.74589 0.93455 0.92539 0.87827 0.93487 0.95819 0.90836 0.98702 0.92652 0.94133 0.96746 0.91782 0.88039 0.95268 0.92157 0.88421 0.89143 0.93539 0.95179 0.90703 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.77 71.98 0.63 -1.18 16 2 C 0.09 1.16 2.44 44.94 0.11 1.27 16 3 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 4 C -0.09 -1.62 3.96 30.65 0.12 -1.50 16 5 C -0.10 -1.49 2.59 -11.46 -0.03 -1.52 16 6 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 7 C 0.51 11.79 7.16 87.66 0.63 12.42 16 8 O -0.59 -19.87 15.98 -3.02 -0.05 -19.92 16 9 N -0.71 -13.34 5.46 -463.06 -2.53 -15.87 16 10 C 0.13 3.27 5.61 86.38 0.48 3.75 16 11 C 0.06 1.28 5.08 86.31 0.44 1.72 16 12 N -0.54 -17.95 4.63 -895.24 -4.14 -22.10 16 13 C 0.05 1.98 5.46 86.38 0.47 2.46 16 14 C 0.18 9.37 5.42 86.35 0.47 9.83 16 15 N -0.61 -31.77 3.04 -698.13 -2.12 -33.89 16 16 C -0.26 -14.65 9.63 84.03 0.81 -13.84 16 17 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 18 C -0.05 -3.13 4.94 84.86 0.42 -2.71 16 19 N -0.94 -57.15 11.15 21.65 0.24 -56.91 16 20 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 C 0.14 5.87 6.69 86.35 0.58 6.44 16 25 C 0.06 1.88 5.62 86.38 0.49 2.37 16 26 C -0.10 -1.15 5.25 30.64 0.16 -0.99 16 27 C 0.06 0.56 5.46 86.32 0.47 1.03 16 28 N -0.56 -7.08 4.75 -897.19 -4.26 -11.34 16 29 C 0.02 0.20 9.05 127.69 1.16 1.36 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.67 6.32 -2.39 -0.02 0.66 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.05 1.28 8.05 -2.39 -0.02 1.26 16 35 H 0.42 4.50 7.94 -92.71 -0.74 3.77 16 36 H 0.05 1.43 6.40 -2.39 -0.02 1.42 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.84 7.97 -2.39 -0.02 1.82 16 39 H 0.05 1.00 8.12 -2.39 -0.02 0.98 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 2.72 6.16 -2.39 -0.01 2.71 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.06 3.15 6.12 -2.39 -0.01 3.14 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.06 2.52 7.95 -2.39 -0.02 2.50 16 47 H 0.10 2.51 7.99 -2.39 -0.02 2.49 16 48 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 49 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.10 0.61 7.64 -2.38 -0.02 0.59 16 51 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 52 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 53 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 54 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 55 H 0.07 0.65 6.21 -2.38 -0.01 0.63 16 Total: -1.00 -74.43 414.14 -3.32 -77.75 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.11 Total: 13.82 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 7.40 Total: 20.91 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -12.81 Total: -140.11 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.05 Total: -19.92 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.43 -3.32 -77.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316966485.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.524 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds