Wall clock time and date at job start Tue Mar 31 2020 22:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37236 * 125.68431 * 2 1 4 4 C 1.46141 * 125.97667 * 0.02562 * 3 2 1 5 5 O 1.21382 * 120.00262 * 0.25954 * 4 3 2 6 6 C 1.38592 * 108.05141 * 180.22325 * 3 2 1 7 7 Br 1.89097 * 126.29145 * 179.79362 * 6 3 2 8 8 C 1.39291 * 107.42092 * 359.77355 * 6 3 2 9 9 C 1.36720 * 125.68632 * 179.82885 * 2 1 3 10 10 C 1.47154 * 125.84006 * 0.03967 * 9 2 1 11 11 O 1.21672 * 120.00183 * 8.55997 * 10 9 2 12 12 N 1.34780 * 119.99989 * 188.56303 * 10 9 2 13 13 C 1.36564 * 120.00055 * 182.69609 * 12 10 9 14 14 H 1.08002 * 119.99895 * 325.25719 * 13 12 10 15 15 C 1.39248 * 120.00443 * 144.99195 * 13 12 10 16 16 N 1.31235 * 120.00007 * 41.34959 * 15 13 12 17 17 Si 1.86802 * 120.00032 * 221.35887 * 15 13 12 18 18 H 1.48502 * 109.47009 * 89.99278 * 17 15 13 19 19 H 1.48494 * 109.46824 * 209.99553 * 17 15 13 20 20 H 1.48499 * 109.47004 * 329.99362 * 17 15 13 21 21 C 1.46493 * 119.99963 * 2.69025 * 12 10 9 22 22 C 1.47203 * 109.47426 * 271.80955 * 21 12 10 23 23 N 5.24231 * 137.76552 * 211.56343 * 2 1 3 24 24 H 1.08994 * 109.47012 * 272.95855 * 1 2 3 25 25 H 1.09009 * 109.46823 * 32.95721 * 1 2 3 26 26 H 1.08996 * 109.47147 * 152.95380 * 1 2 3 27 27 H 1.08004 * 119.99730 * 180.26821 * 4 3 2 28 28 H 1.07995 * 126.20986 * 179.97438 * 8 6 3 29 29 H 0.96999 * 120.00097 * 180.02562 * 16 15 13 30 30 H 1.09001 * 109.47295 * 31.80934 * 21 12 10 31 31 H 1.09007 * 109.47357 * 151.80857 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2656 1.1147 0.0000 4 6 1.8057 2.5019 0.0005 5 8 0.6170 2.7473 0.0058 6 6 3.5863 0.6949 -0.0051 7 35 5.1147 1.8084 -0.0129 8 6 3.5812 -0.6980 -0.0030 9 6 2.2626 -1.1105 0.0033 10 6 1.7963 -2.5062 0.0067 11 8 0.6153 -2.7535 -0.1502 12 7 2.6774 -3.5106 0.1835 13 6 2.2536 -4.8078 0.1317 14 1 1.2739 -5.0710 0.5025 15 6 3.0822 -5.7902 -0.4042 16 7 4.3653 -5.7881 -0.1290 17 14 2.3673 -7.1111 -1.5150 18 1 2.4161 -6.6508 -2.9260 19 1 3.1598 -8.3589 -1.3735 20 1 0.9578 -7.3734 -1.1283 21 6 4.0898 -3.2109 0.4312 22 6 4.7991 -3.0932 -0.8532 23 7 5.3464 -3.0024 -1.8445 24 1 -0.3633 0.0530 1.0262 25 1 -0.3633 0.8624 -0.5591 26 1 -0.3633 -0.9152 -0.4673 27 1 2.5237 3.3087 -0.0039 28 1 4.4502 -1.3392 -0.0063 29 1 4.9426 -6.4722 -0.5026 30 1 4.1714 -2.2719 0.9787 31 1 4.5340 -4.0140 1.0193 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319045309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:57 Heat of formation + Delta-G solvation = 54.466928 kcal Electronic energy + Delta-G solvation = -21261.376750 eV Core-core repulsion = 17785.611023 eV Total energy + Delta-G solvation = -3475.765727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.51015 -39.02162 -38.14698 -36.28513 -34.64922 -33.28474 -32.36940 -30.80020 -29.62687 -27.88671 -26.19612 -25.71640 -23.84923 -21.03056 -20.53448 -19.08833 -18.05142 -17.25237 -16.57382 -16.14199 -15.70629 -15.49679 -15.05808 -14.46401 -14.23995 -13.96317 -13.72015 -13.56319 -13.40500 -12.98170 -12.48672 -12.22532 -12.16541 -12.03768 -11.71417 -11.60642 -11.41109 -10.85338 -10.77743 -10.54862 -10.48331 -10.47105 -9.82440 -9.09584 -8.87372 -8.58329 -8.32459 -8.16263 -6.97304 -4.19947 0.81832 1.61573 2.08389 2.74605 2.88759 3.04848 3.18342 3.20664 3.39067 3.56615 3.92280 3.93671 4.17853 4.41970 4.62436 4.87834 5.00049 5.04680 5.23567 5.31219 5.47694 5.68742 5.77285 5.92426 6.00282 6.40731 6.51497 6.79049 7.01144 7.17225 7.31485 7.81178 8.07655 8.34947 8.72987 8.88659 9.49331 10.08945 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.004743 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.183919 B = 5901.478697 C = 7315.182905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.366 5.366 3 C -0.070 4.070 4 C 0.408 3.592 5 O -0.469 6.469 6 C -0.102 4.102 7 Br -0.024 7.024 8 C -0.178 4.178 9 C 0.047 3.953 10 C 0.504 3.496 11 O -0.569 6.569 12 N -0.406 5.406 13 C -0.349 4.349 14 H 0.112 0.888 15 C 0.074 3.926 16 N -0.822 5.822 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.262 1.262 21 C 0.167 3.833 22 C 0.226 3.774 23 N -0.455 5.455 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.175 0.825 29 H 0.281 0.719 30 H 0.109 0.891 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 13.024 3.797 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.038 5.038 3 C -0.187 4.187 4 C 0.268 3.732 5 O -0.343 6.343 6 C -0.190 4.190 7 Br 0.061 6.939 8 C -0.203 4.203 9 C -0.075 4.075 10 C 0.294 3.706 11 O -0.454 6.454 12 N -0.123 5.123 13 C -0.474 4.474 14 H 0.130 0.870 15 C -0.139 4.139 16 N -0.454 5.454 17 Si 0.723 3.277 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.185 1.185 21 C 0.041 3.959 22 C -0.092 4.092 23 N -0.134 5.134 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.192 0.808 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.472 13.467 2.256 13.876 hybrid contribution -0.386 -1.104 -0.236 1.193 sum 2.086 12.362 2.021 12.699 Atomic orbital electron populations 1.22606 0.74512 1.06568 1.04422 1.43987 1.07488 1.03840 1.48471 1.21165 0.89353 0.90271 1.17897 1.23237 0.91055 0.88469 0.70447 1.90540 1.20440 1.86904 1.36419 1.21531 0.90179 0.94570 1.12703 1.96603 1.34782 1.64580 1.97944 1.22211 0.96592 0.93062 1.08461 1.21012 0.89468 0.89306 1.07751 1.16793 0.86749 0.81918 0.85111 1.90621 1.15893 1.83405 1.55524 1.43060 1.04269 1.05728 1.59276 1.19288 1.03953 0.81257 1.42902 0.86998 1.25476 0.94482 0.98997 0.94897 1.69932 1.06190 1.34335 1.34915 0.86393 0.80537 0.79107 0.81663 1.19904 1.20877 1.18548 1.20181 0.82978 1.05162 0.87580 1.29522 0.93382 0.90924 0.95358 1.80997 1.10109 1.11182 1.11108 0.90275 0.88895 0.86517 0.85944 0.80842 0.90805 0.87382 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 10.09 59.85 0.60 1.51 16 2 N -0.37 -6.23 3.18 -115.94 -0.37 -6.60 16 3 C -0.07 -1.05 6.86 -82.15 -0.56 -1.61 16 4 C 0.41 5.09 11.43 33.90 0.39 5.48 16 5 O -0.47 -6.92 15.50 5.47 0.08 -6.83 16 6 C -0.10 -1.52 6.63 -39.06 -0.26 -1.78 16 7 Br -0.02 -0.28 33.67 -68.01 -2.29 -2.57 16 8 C -0.18 -3.01 8.17 -39.22 -0.32 -3.33 16 9 C 0.05 0.89 6.72 -82.10 -0.55 0.34 16 10 C 0.50 11.14 7.58 -12.64 -0.10 11.04 16 11 O -0.57 -13.84 14.34 5.21 0.07 -13.77 16 12 N -0.41 -9.02 2.57 -119.28 -0.31 -9.32 16 13 C -0.35 -8.43 8.85 -15.07 -0.13 -8.57 16 14 H 0.11 2.84 7.82 -52.49 -0.41 2.43 16 15 C 0.07 1.73 5.13 -17.43 -0.09 1.64 16 16 N -0.82 -18.77 9.95 55.51 0.55 -18.22 16 17 Si 0.90 19.14 29.69 -169.99 -5.05 14.10 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 21 C 0.17 3.18 4.70 -6.83 -0.03 3.14 16 22 C 0.23 4.67 11.74 -20.76 -0.24 4.43 16 23 N -0.45 -10.06 18.54 42.15 0.78 -9.27 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.09 1.32 6.46 -51.92 -0.34 0.98 16 26 H 0.12 1.99 5.96 -51.93 -0.31 1.68 16 27 H 0.12 1.09 7.87 -52.48 -0.41 0.68 16 28 H 0.17 2.89 3.20 -52.49 -0.17 2.73 16 29 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 30 H 0.11 1.72 4.65 -51.93 -0.24 1.48 16 31 H 0.15 2.95 6.32 -51.93 -0.33 2.62 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -27.81 295.35 -5.13 -32.93 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -1.76 Total: 2.80 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -1.30 Total: 12.31 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.66 Total: -43.42 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.16 Total: -20.60 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.05 Total: 14.10 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.29 Total: -2.57 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.81 -5.13 -32.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319045309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.400 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds