Wall clock time and date at job start Tue Mar 31 2020 22:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37236 * 125.68431 * 2 1 4 4 C 1.46141 * 125.97667 * 0.02562 * 3 2 1 5 5 O 1.21382 * 120.00262 * 0.25954 * 4 3 2 6 6 C 1.38592 * 108.05141 * 180.22325 * 3 2 1 7 7 Br 1.89097 * 126.29145 * 179.79362 * 6 3 2 8 8 C 1.39291 * 107.42092 * 359.77355 * 6 3 2 9 9 C 1.36720 * 125.68632 * 179.82885 * 2 1 3 10 10 C 1.47154 * 125.84006 * 0.03967 * 9 2 1 11 11 O 1.21672 * 120.00183 * 8.55997 * 10 9 2 12 12 N 1.34780 * 119.99989 * 188.56303 * 10 9 2 13 13 C 1.36564 * 120.00055 * 182.69609 * 12 10 9 14 14 H 1.08002 * 119.99895 * 325.25719 * 13 12 10 15 15 C 1.39248 * 120.00443 * 144.99195 * 13 12 10 16 16 N 1.31235 * 120.00007 * 41.34959 * 15 13 12 17 17 Si 1.86802 * 120.00032 * 221.35887 * 15 13 12 18 18 H 1.48502 * 109.47009 * 89.99278 * 17 15 13 19 19 H 1.48494 * 109.46824 * 209.99553 * 17 15 13 20 20 H 1.48499 * 109.47004 * 329.99362 * 17 15 13 21 21 C 1.46493 * 119.99963 * 2.69025 * 12 10 9 22 22 C 1.47203 * 109.47426 * 271.80955 * 21 12 10 23 23 N 5.24231 * 137.76552 * 211.56343 * 2 1 3 24 24 H 1.08994 * 109.47012 * 272.95855 * 1 2 3 25 25 H 1.09009 * 109.46823 * 32.95721 * 1 2 3 26 26 H 1.08996 * 109.47147 * 152.95380 * 1 2 3 27 27 H 1.08004 * 119.99730 * 180.26821 * 4 3 2 28 28 H 1.07995 * 126.20986 * 179.97438 * 8 6 3 29 29 H 0.96999 * 120.00097 * 180.02562 * 16 15 13 30 30 H 1.09001 * 109.47295 * 31.80934 * 21 12 10 31 31 H 1.09007 * 109.47357 * 151.80857 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2656 1.1147 0.0000 4 6 1.8057 2.5019 0.0005 5 8 0.6170 2.7473 0.0058 6 6 3.5863 0.6949 -0.0051 7 35 5.1147 1.8084 -0.0129 8 6 3.5812 -0.6980 -0.0030 9 6 2.2626 -1.1105 0.0033 10 6 1.7963 -2.5062 0.0067 11 8 0.6153 -2.7535 -0.1502 12 7 2.6774 -3.5106 0.1835 13 6 2.2536 -4.8078 0.1317 14 1 1.2739 -5.0710 0.5025 15 6 3.0822 -5.7902 -0.4042 16 7 4.3653 -5.7881 -0.1290 17 14 2.3673 -7.1111 -1.5150 18 1 2.4161 -6.6508 -2.9260 19 1 3.1598 -8.3589 -1.3735 20 1 0.9578 -7.3734 -1.1283 21 6 4.0898 -3.2109 0.4312 22 6 4.7991 -3.0932 -0.8532 23 7 5.3464 -3.0024 -1.8445 24 1 -0.3633 0.0530 1.0262 25 1 -0.3633 0.8624 -0.5591 26 1 -0.3633 -0.9152 -0.4673 27 1 2.5237 3.3087 -0.0039 28 1 4.4502 -1.3392 -0.0063 29 1 4.9426 -6.4722 -0.5026 30 1 4.1714 -2.2719 0.9787 31 1 4.5340 -4.0140 1.0193 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319045309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:56 Heat of formation + Delta-G solvation = 38.577352 kcal Electronic energy + Delta-G solvation = -21262.065773 eV Core-core repulsion = 17785.611023 eV Total energy + Delta-G solvation = -3476.454751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.83095 -40.48077 -39.45321 -37.98625 -36.37327 -34.66999 -33.96961 -32.07787 -30.87238 -29.46134 -27.64102 -27.13545 -25.27421 -22.37517 -21.92802 -20.46227 -19.76189 -18.74043 -18.06791 -17.55481 -16.92884 -16.81861 -16.65767 -16.12715 -15.70954 -15.43776 -15.21241 -14.91272 -14.67759 -14.40549 -13.96094 -13.81443 -13.63799 -13.62524 -13.39385 -13.15877 -13.01692 -12.53755 -12.16935 -12.03538 -11.92990 -11.62645 -10.91823 -10.85619 -10.61193 -10.08243 -9.84671 -9.45713 -8.75321 -6.03459 -0.36306 0.47475 0.71637 1.26719 1.41301 1.44547 1.54151 1.76330 1.78518 1.92594 2.21553 2.27990 2.70302 2.96462 3.13013 3.32284 3.67132 3.74542 3.91161 4.19082 4.27678 4.31813 4.42181 4.62672 4.69267 4.93214 5.13777 5.37393 5.50758 5.73164 6.03323 6.25004 6.31770 6.69633 6.95584 7.13162 7.75862 8.29785 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.004743 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.183919 B = 5901.478697 C = 7315.182905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.374 5.374 3 C -0.057 4.057 4 C 0.419 3.581 5 O -0.486 6.486 6 C -0.107 4.107 7 Br 0.011 6.989 8 C -0.170 4.170 9 C 0.013 3.987 10 C 0.504 3.496 11 O -0.602 6.602 12 N -0.418 5.418 13 C -0.376 4.376 14 H 0.089 0.911 15 C 0.054 3.946 16 N -0.825 5.825 17 Si 0.939 3.061 18 H -0.290 1.290 19 H -0.268 1.268 20 H -0.265 1.265 21 C 0.174 3.826 22 C 0.238 3.762 23 N -0.480 5.480 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.284 0.716 30 H 0.143 0.857 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 15.221 4.035 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.046 5.046 3 C -0.175 4.175 4 C 0.279 3.721 5 O -0.360 6.360 6 C -0.195 4.195 7 Br 0.096 6.904 8 C -0.196 4.196 9 C -0.108 4.108 10 C 0.295 3.705 11 O -0.489 6.489 12 N -0.136 5.136 13 C -0.501 4.501 14 H 0.106 0.894 15 C -0.158 4.158 16 N -0.456 5.456 17 Si 0.763 3.237 18 H -0.217 1.217 19 H -0.193 1.193 20 H -0.189 1.189 21 C 0.048 3.952 22 C -0.080 4.080 23 N -0.160 5.160 24 H 0.108 0.892 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.189 0.811 28 H 0.192 0.808 29 H 0.095 0.905 30 H 0.160 0.840 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.605 15.644 2.509 16.249 hybrid contribution -0.733 -1.583 -0.301 1.771 sum 2.872 14.060 2.207 14.520 Atomic orbital electron populations 1.22577 0.74067 1.05942 1.05108 1.44182 1.07998 1.04022 1.48371 1.21862 0.89274 0.90919 1.15441 1.23901 0.91369 0.87853 0.68951 1.90553 1.21719 1.86773 1.36953 1.21663 0.91479 0.94184 1.12138 1.96646 1.32849 1.63061 1.97851 1.22187 0.95604 0.94250 1.07556 1.20528 0.90601 0.88213 1.11486 1.17271 0.86295 0.83325 0.83633 1.90589 1.17345 1.84446 1.56555 1.43100 1.05446 1.05230 1.59821 1.19083 1.03536 0.82580 1.44923 0.89358 1.25800 0.94888 1.00035 0.95114 1.69933 1.06239 1.34737 1.34725 0.85787 0.80141 0.78394 0.79393 1.21667 1.19254 1.18932 1.20313 0.81080 1.06761 0.87019 1.29786 0.92785 0.90059 0.95342 1.80993 1.11021 1.12254 1.11743 0.89169 0.87566 0.88719 0.81124 0.80823 0.90478 0.84025 0.83231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.91 10.09 127.77 1.29 3.19 16 2 N -0.37 -12.29 3.18 -520.71 -1.66 -13.95 16 3 C -0.06 -1.55 6.86 40.43 0.28 -1.27 16 4 C 0.42 8.85 11.43 69.87 0.80 9.65 16 5 O -0.49 -12.78 15.50 -3.35 -0.05 -12.83 16 6 C -0.11 -2.90 6.63 22.61 0.15 -2.75 16 7 Br 0.01 0.23 33.67 -20.37 -0.69 -0.45 16 8 C -0.17 -5.48 8.17 22.51 0.18 -5.29 16 9 C 0.01 0.49 6.72 40.71 0.27 0.76 16 10 C 0.50 22.73 7.58 86.58 0.66 23.39 16 11 O -0.60 -30.44 14.34 -4.26 -0.06 -30.50 16 12 N -0.42 -18.94 2.57 -649.50 -1.67 -20.61 16 13 C -0.38 -18.72 8.85 84.20 0.74 -17.98 16 14 H 0.09 4.72 7.82 -2.91 -0.02 4.70 16 15 C 0.05 2.54 5.13 85.02 0.44 2.97 16 16 N -0.82 -37.53 9.95 21.71 0.22 -37.32 16 17 Si 0.94 39.64 29.69 68.60 2.04 41.68 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 C 0.17 6.54 4.70 84.58 0.40 6.94 16 22 C 0.24 9.69 11.74 89.44 1.05 10.74 16 23 N -0.48 -20.94 18.54 20.01 0.37 -20.57 16 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.11 2.88 6.46 -2.38 -0.02 2.87 16 26 H 0.09 3.32 5.96 -2.39 -0.01 3.31 16 27 H 0.17 2.10 7.87 -2.91 -0.02 2.08 16 28 H 0.18 5.51 3.20 -2.91 -0.01 5.50 16 29 H 0.28 12.40 8.30 -92.71 -0.77 11.63 16 30 H 0.14 4.35 4.65 -2.39 -0.01 4.34 16 31 H 0.15 5.76 6.32 -2.38 -0.02 5.75 16 Total: -1.00 -60.21 295.35 5.98 -54.23 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.22 Total: 9.95 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 6.26 Total: 30.37 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -2.74 Total: -92.44 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.11 Total: -43.33 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.04 Total: 41.68 kcal Atomic # 35 Polarization: 0.23 SS G_CDS: -0.69 Total: -0.45 kcal Total: -60.21 5.98 -54.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319045309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.806 kcal (2) G-P(sol) polarization free energy of solvation -60.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds