Wall clock time and date at job start Tue Mar 31 2020 22:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50559 * 2 1 4 4 C 1.53036 * 109.53834 * 120.10171 * 2 1 3 5 5 N 1.46842 * 109.52506 * 179.13938 * 4 2 1 6 6 C 1.46903 * 111.00151 * 174.16065 * 5 4 2 7 7 C 1.50701 * 109.47423 * 190.00411 * 6 5 4 8 8 O 1.21289 * 119.99510 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99653 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46821 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00443 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00089 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00218 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00132 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47270 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46987 * 120.00135 * 15 13 11 18 18 H 1.48502 * 109.47302 * 239.99857 * 15 13 11 19 19 C 1.46848 * 111.20008 * 298.26049 * 5 4 2 20 20 C 1.53031 * 109.52243 * 61.73946 * 19 5 4 21 21 C 1.53113 * 109.28018 * 300.82005 * 20 19 5 22 22 H 1.09000 * 109.57896 * 297.71796 * 21 20 19 23 23 N 1.46904 * 109.52451 * 177.55920 * 21 20 19 24 24 C 1.46959 * 111.00103 * 308.44337 * 23 21 20 25 25 C 1.53047 * 109.36204 * 183.18529 * 24 23 21 26 26 N 1.46959 * 109.36419 * 301.59618 * 25 24 23 27 27 C 1.46904 * 110.99556 * 183.18970 * 26 25 24 28 28 C 1.46958 * 110.87990 * 59.32841 * 26 25 24 29 29 C 1.46959 * 110.99890 * 72.24169 * 23 21 20 30 30 H 1.09003 * 109.46674 * 174.98551 * 1 2 3 31 31 H 1.08998 * 109.47067 * 294.98142 * 1 2 3 32 32 H 1.08999 * 109.47250 * 54.98254 * 1 2 3 33 33 H 1.09001 * 109.46161 * 299.15595 * 4 2 1 34 34 H 1.09002 * 109.46016 * 59.13371 * 4 2 1 35 35 H 1.09000 * 109.46626 * 310.00132 * 6 5 4 36 36 H 1.09003 * 109.46831 * 69.99864 * 6 5 4 37 37 H 0.97001 * 119.99827 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47328 * 299.99032 * 10 9 7 39 39 H 1.09003 * 109.47640 * 59.99688 * 10 9 7 40 40 H 0.96998 * 120.00501 * 179.97438 * 14 13 11 41 41 H 1.08998 * 109.46058 * 181.76191 * 19 5 4 42 42 H 1.09001 * 109.45856 * 301.73252 * 19 5 4 43 43 H 1.09000 * 109.50105 * 180.88184 * 20 19 5 44 44 H 1.08998 * 109.50593 * 60.76858 * 20 19 5 45 45 H 1.09000 * 109.48333 * 63.22128 * 24 23 21 46 46 H 1.08995 * 109.50685 * 303.16558 * 24 23 21 47 47 H 1.09004 * 109.48431 * 181.63537 * 25 24 23 48 48 H 1.08993 * 109.48821 * 61.56873 * 25 24 23 49 49 H 1.08996 * 109.47200 * 60.00675 * 27 26 25 50 50 H 1.08995 * 109.47307 * 300.00133 * 27 26 25 51 51 H 1.09001 * 109.46753 * 180.02562 * 27 26 25 52 52 H 1.09000 * 109.48662 * 60.63881 * 28 26 25 53 53 H 1.08993 * 109.48583 * 180.70877 * 28 26 25 54 54 H 1.09001 * 109.48883 * 296.78235 * 29 23 21 55 55 H 1.09005 * 109.48470 * 56.82064 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0418 -0.7233 1.2477 5 7 3.5101 -0.7412 1.2371 6 6 4.0389 -1.3048 2.4863 7 6 5.5285 -1.0842 2.5462 8 8 6.0940 -0.5140 1.6373 9 7 6.2323 -1.5215 3.6091 10 6 7.6804 -1.3075 3.6670 11 6 8.2228 -1.8856 4.9486 12 1 7.5555 -2.3642 5.6501 13 6 9.5709 -1.8036 5.2257 14 7 10.3837 -1.2213 4.3713 15 14 10.2431 -2.5196 6.8147 16 1 9.1315 -3.1159 7.5982 17 1 11.2449 -3.5696 6.4996 18 1 10.8876 -1.4431 7.6091 19 6 4.0239 -1.4715 0.0713 20 6 3.5712 -0.7705 -1.2115 21 6 2.0413 -0.7233 -1.2490 22 1 1.6449 -1.7385 -1.2699 23 7 1.6017 0.0001 -2.4496 24 6 2.2729 1.3032 -2.5547 25 6 1.7305 2.0568 -3.7713 26 7 1.9540 1.2535 -4.9815 27 6 1.5144 1.9769 -6.1821 28 6 1.2827 -0.0496 -4.8765 29 6 1.8251 -0.8032 -3.6598 30 1 -0.3633 -1.0238 -0.0898 31 1 -0.3633 0.4340 0.9315 32 1 -0.3634 0.5897 -0.8416 33 1 1.6914 -0.2025 2.1388 34 1 1.6664 -1.7466 1.2539 35 1 3.5644 -0.8137 3.3359 36 1 3.8282 -2.3738 2.5204 37 1 5.7800 -1.9779 4.3358 38 1 8.1545 -1.7986 2.8172 39 1 7.8914 -0.2386 3.6330 40 1 11.3320 -1.1633 4.5664 41 1 5.1130 -1.4942 0.1080 42 1 3.6389 -2.4912 0.0830 43 1 3.9396 -1.3217 -2.0768 44 1 3.9673 0.2448 -1.2306 45 1 3.3461 1.1512 -2.6698 46 1 2.0826 1.8844 -1.6524 47 1 2.2476 3.0114 -3.8680 48 1 0.6624 2.2327 -3.6437 49 1 2.0754 2.9071 -6.2716 50 1 0.4506 2.2004 -6.1025 51 1 1.6907 1.3597 -7.0630 52 1 0.2095 0.1024 -4.7614 53 1 1.4734 -0.6305 -5.7788 54 1 2.8932 -0.9791 -3.7874 55 1 1.3084 -1.7580 -3.5630 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319855305.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:51 Heat of formation + Delta-G solvation = -44.666095 kcal Electronic energy + Delta-G solvation = -30619.666810 eV Core-core repulsion = 26690.205008 eV Total energy + Delta-G solvation = -3929.461802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38861 -40.46346 -39.05303 -36.66452 -36.02312 -34.34852 -34.10233 -32.50550 -31.91298 -30.11818 -28.96167 -27.93511 -26.61619 -25.10203 -24.71474 -24.37538 -23.27171 -22.69924 -21.27832 -20.99769 -19.89053 -18.88822 -17.60375 -17.50988 -17.14777 -16.65679 -16.41018 -16.16270 -16.04826 -15.89494 -15.67203 -15.62221 -15.52230 -15.17154 -14.95610 -14.54254 -14.28904 -14.10483 -14.05727 -13.87434 -13.41932 -13.34704 -13.14660 -12.93336 -12.88315 -12.74846 -12.69009 -12.58125 -12.55284 -12.36571 -12.22131 -12.11574 -11.94695 -11.74008 -11.62050 -11.46484 -11.44345 -11.04320 -10.81704 -10.60519 -9.79835 -9.37296 -9.22696 -9.15516 -8.29761 -6.46470 1.42528 1.43804 1.57320 1.82152 2.27799 2.46961 2.86090 2.99333 3.05026 3.07024 3.69221 3.80117 3.92396 4.00491 4.03184 4.09386 4.19320 4.23367 4.27655 4.35122 4.38106 4.40664 4.47042 4.48900 4.58241 4.61979 4.62999 4.66469 4.72787 4.80105 4.82427 4.86953 4.91138 4.95340 5.00277 5.00803 5.08631 5.11581 5.13357 5.20290 5.24343 5.26923 5.45364 5.49750 5.53253 5.71279 5.85049 5.93908 5.99113 6.03547 6.16777 6.19542 6.21728 6.65550 6.97118 7.23466 7.55759 8.82658 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.001998 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.779047 B =14009.806530 C =14782.023180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 H 0.063 0.937 4 C 0.063 3.937 5 N -0.540 5.540 6 C 0.050 3.950 7 C 0.493 3.507 8 O -0.585 6.585 9 N -0.710 5.710 10 C 0.269 3.731 11 C -0.555 4.555 12 H 0.085 0.915 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.252 1.252 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.061 3.939 20 C -0.135 4.135 21 C 0.098 3.902 22 H 0.086 0.914 23 N -0.522 5.522 24 C 0.054 3.946 25 C 0.063 3.937 26 N -0.564 5.564 27 C 0.028 3.972 28 C 0.063 3.937 29 C 0.053 3.947 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.408 0.592 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.268 0.732 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.027 0.973 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.043 0.957 49 H 0.070 0.930 50 H 0.030 0.970 51 H 0.075 0.925 52 H 0.042 0.958 53 H 0.088 0.912 54 H 0.029 0.971 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.639 0.686 -14.383 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.082 0.918 4 C -0.064 4.064 5 N -0.265 5.265 6 C -0.080 4.080 7 C 0.280 3.720 8 O -0.465 6.465 9 N -0.361 5.361 10 C 0.146 3.854 11 C -0.593 4.593 12 H 0.103 0.897 13 C -0.198 4.198 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.175 1.175 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.067 4.067 20 C -0.174 4.174 21 C -0.010 4.010 22 H 0.104 0.896 23 N -0.245 5.245 24 C -0.074 4.074 25 C -0.065 4.065 26 N -0.289 5.289 27 C -0.120 4.120 28 C -0.065 4.065 29 C -0.075 4.075 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.147 0.853 36 H 0.102 0.898 37 H 0.243 0.757 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.061 0.939 49 H 0.089 0.911 50 H 0.048 0.952 51 H 0.093 0.907 52 H 0.060 0.940 53 H 0.106 0.894 54 H 0.047 0.953 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.918 1.622 -15.114 30.046 hybrid contribution 0.981 -1.003 0.794 1.613 sum -24.937 0.619 -14.319 28.762 Atomic orbital electron populations 1.21553 0.92596 1.02117 1.01847 1.21108 0.96841 0.99190 0.92097 0.91818 1.22266 0.84713 1.00053 0.99388 1.61472 1.09092 1.55045 1.00916 1.21923 0.89856 1.01024 0.95221 1.21417 0.90908 0.78088 0.81607 1.90619 1.73097 1.43843 1.38985 1.46188 1.09335 1.58607 1.22016 1.18477 0.76733 0.94129 0.96036 1.21670 0.94130 1.38896 1.04555 0.89696 1.26103 0.97149 0.95247 1.01335 1.70151 1.04812 1.44009 1.38083 0.85093 0.78515 0.77820 0.77663 1.17500 1.20509 1.20481 1.22010 0.99959 0.94485 0.90288 1.22108 0.98277 1.00757 0.96255 1.21764 0.91224 0.97818 0.90214 0.89602 1.62448 1.56553 1.03449 1.02048 1.22174 0.96088 0.90996 0.98123 1.22114 0.99372 0.96213 0.88790 1.62157 1.58701 1.04633 1.03410 1.22354 0.98445 0.99093 0.92137 1.22139 0.96282 0.90128 0.97996 1.22216 0.99144 0.96846 0.89302 0.92499 0.92296 0.92050 0.89094 0.93413 0.85329 0.89784 0.75652 0.99788 0.99783 0.92291 0.92731 0.94401 0.92063 0.92697 0.95435 0.90138 0.90113 0.93923 0.91114 0.95185 0.90664 0.93965 0.89417 0.95295 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.00 71.98 0.65 -1.07 16 2 C -0.07 -1.33 2.28 -10.74 -0.02 -1.35 16 3 H 0.06 1.39 6.47 -2.39 -0.02 1.37 16 4 C 0.06 1.20 4.75 86.33 0.41 1.61 16 5 N -0.54 -14.68 4.40 -900.94 -3.96 -18.64 16 6 C 0.05 1.35 5.45 85.56 0.47 1.82 16 7 C 0.49 19.88 7.50 87.66 0.66 20.54 16 8 O -0.58 -29.53 14.33 -3.06 -0.04 -29.58 16 9 N -0.71 -30.16 5.55 -466.78 -2.59 -32.75 16 10 C 0.27 15.01 5.43 85.63 0.46 15.47 16 11 C -0.55 -30.42 9.28 25.60 0.24 -30.18 16 12 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 13 C 0.00 0.06 5.46 84.65 0.46 0.52 16 14 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 15 Si 0.99 42.58 29.54 68.60 2.03 44.60 16 16 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 C 0.06 1.76 5.11 86.32 0.44 2.20 16 20 C -0.13 -3.41 4.61 30.64 0.14 -3.26 16 21 C 0.10 1.88 1.67 44.99 0.07 1.96 16 22 H 0.09 1.53 7.99 -2.39 -0.02 1.51 16 23 N -0.52 -9.43 4.09 -870.00 -3.56 -13.00 16 24 C 0.05 1.09 4.70 86.31 0.41 1.49 16 25 C 0.06 1.09 5.62 86.31 0.49 1.57 16 26 N -0.56 -9.66 4.97 -921.96 -4.58 -14.24 16 27 C 0.03 0.35 9.60 127.69 1.23 1.58 16 28 C 0.06 0.94 5.62 86.31 0.49 1.43 16 29 C 0.05 0.89 5.37 86.31 0.46 1.36 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.93 7.84 -2.39 -0.02 0.91 16 33 H 0.09 1.49 8.02 -2.39 -0.02 1.47 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.13 2.72 7.99 -2.39 -0.02 2.70 16 36 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 37 H 0.41 14.06 8.32 -92.71 -0.77 13.29 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.05 2.08 5.78 -2.39 -0.01 2.06 16 42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.54 6.96 -2.39 -0.02 1.52 16 44 H 0.05 1.65 6.25 -2.39 -0.01 1.64 16 45 H 0.03 0.68 6.36 -2.39 -0.02 0.67 16 46 H 0.08 1.62 6.38 -2.39 -0.02 1.61 16 47 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 51 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 52 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.09 1.12 8.13 -2.39 -0.02 1.10 16 54 H 0.03 0.59 6.91 -2.39 -0.02 0.57 16 55 H 0.09 1.27 8.05 -2.38 -0.02 1.25 16 Total: -1.00 -73.05 412.05 -5.30 -78.35 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.08 Total: 26.23 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 7.04 Total: 15.67 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -14.41 Total: -135.28 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.04 Total: -29.58 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -73.05 -5.30 -78.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319855305.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.681 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds